diff --git a/config/config.md b/config/config.md
index 85f5e481afd5..3574be2411f9 100644
--- a/config/config.md
+++ b/config/config.md
@@ -157,6 +157,11 @@
 | `region_engine.mito.fulltext_index.create_on_compaction` | String | `auto` | Whether to create the index on compaction.<br/>- `auto`: automatically (default)<br/>- `disable`: never |
 | `region_engine.mito.fulltext_index.apply_on_query` | String | `auto` | Whether to apply the index on query<br/>- `auto`: automatically (default)<br/>- `disable`: never |
 | `region_engine.mito.fulltext_index.mem_threshold_on_create` | String | `auto` | Memory threshold for index creation.<br/>- `auto`: automatically determine the threshold based on the system memory size (default)<br/>- `unlimited`: no memory limit<br/>- `[size]` e.g. `64MB`: fixed memory threshold |
+| `region_engine.mito.bloom_filter_index` | -- | -- | The options for bloom filter in Mito engine. |
+| `region_engine.mito.bloom_filter_index.create_on_flush` | String | `auto` | Whether to create the bloom filter on flush.<br/>- `auto`: automatically (default)<br/>- `disable`: never |
+| `region_engine.mito.bloom_filter_index.create_on_compaction` | String | `auto` | Whether to create the bloom filter on compaction.<br/>- `auto`: automatically (default)<br/>- `disable`: never |
+| `region_engine.mito.bloom_filter_index.apply_on_query` | String | `auto` | Whether to apply the bloom filter on query<br/>- `auto`: automatically (default)<br/>- `disable`: never |
+| `region_engine.mito.bloom_filter_index.mem_threshold_on_create` | String | `auto` | Memory threshold for bloom filter creation.<br/>- `auto`: automatically determine the threshold based on the system memory size (default)<br/>- `unlimited`: no memory limit<br/>- `[size]` e.g. `64MB`: fixed memory threshold |
 | `region_engine.mito.memtable` | -- | -- | -- |
 | `region_engine.mito.memtable.type` | String | `time_series` | Memtable type.<br/>- `time_series`: time-series memtable<br/>- `partition_tree`: partition tree memtable (experimental) |
 | `region_engine.mito.memtable.index_max_keys_per_shard` | Integer | `8192` | The max number of keys in one shard.<br/>Only available for `partition_tree` memtable. |
@@ -486,6 +491,11 @@
 | `region_engine.mito.fulltext_index.create_on_compaction` | String | `auto` | Whether to create the index on compaction.<br/>- `auto`: automatically (default)<br/>- `disable`: never |
 | `region_engine.mito.fulltext_index.apply_on_query` | String | `auto` | Whether to apply the index on query<br/>- `auto`: automatically (default)<br/>- `disable`: never |
 | `region_engine.mito.fulltext_index.mem_threshold_on_create` | String | `auto` | Memory threshold for index creation.<br/>- `auto`: automatically determine the threshold based on the system memory size (default)<br/>- `unlimited`: no memory limit<br/>- `[size]` e.g. `64MB`: fixed memory threshold |
+| `region_engine.mito.bloom_filter_index` | -- | -- | The options for bloom filter index in Mito engine. |
+| `region_engine.mito.bloom_filter_index.create_on_flush` | String | `auto` | Whether to create the index on flush.<br/>- `auto`: automatically (default)<br/>- `disable`: never |
+| `region_engine.mito.bloom_filter_index.create_on_compaction` | String | `auto` | Whether to create the index on compaction.<br/>- `auto`: automatically (default)<br/>- `disable`: never |
+| `region_engine.mito.bloom_filter_index.apply_on_query` | String | `auto` | Whether to apply the index on query<br/>- `auto`: automatically (default)<br/>- `disable`: never |
+| `region_engine.mito.bloom_filter_index.mem_threshold_on_create` | String | `auto` | Memory threshold for the index creation.<br/>- `auto`: automatically determine the threshold based on the system memory size (default)<br/>- `unlimited`: no memory limit<br/>- `[size]` e.g. `64MB`: fixed memory threshold |
 | `region_engine.mito.memtable` | -- | -- | -- |
 | `region_engine.mito.memtable.type` | String | `time_series` | Memtable type.<br/>- `time_series`: time-series memtable<br/>- `partition_tree`: partition tree memtable (experimental) |
 | `region_engine.mito.memtable.index_max_keys_per_shard` | Integer | `8192` | The max number of keys in one shard.<br/>Only available for `partition_tree` memtable. |
diff --git a/config/datanode.example.toml b/config/datanode.example.toml
index 1b062a4b3af1..05b55d6f7e35 100644
--- a/config/datanode.example.toml
+++ b/config/datanode.example.toml
@@ -576,6 +576,30 @@ apply_on_query = "auto"
 ## - `[size]` e.g. `64MB`: fixed memory threshold
 mem_threshold_on_create = "auto"
 
+## The options for bloom filter index in Mito engine.
+[region_engine.mito.bloom_filter_index]
+
+## Whether to create the index on flush.
+## - `auto`: automatically (default)
+## - `disable`: never
+create_on_flush = "auto"
+
+## Whether to create the index on compaction.
+## - `auto`: automatically (default)
+## - `disable`: never
+create_on_compaction = "auto"
+
+## Whether to apply the index on query
+## - `auto`: automatically (default)
+## - `disable`: never
+apply_on_query = "auto"
+
+## Memory threshold for the index creation.
+## - `auto`: automatically determine the threshold based on the system memory size (default)
+## - `unlimited`: no memory limit
+## - `[size]` e.g. `64MB`: fixed memory threshold
+mem_threshold_on_create = "auto"
+
 [region_engine.mito.memtable]
 ## Memtable type.
 ## - `time_series`: time-series memtable
diff --git a/config/standalone.example.toml b/config/standalone.example.toml
index 77445f8883bf..3e9cfc0694b8 100644
--- a/config/standalone.example.toml
+++ b/config/standalone.example.toml
@@ -619,6 +619,30 @@ apply_on_query = "auto"
 ## - `[size]` e.g. `64MB`: fixed memory threshold
 mem_threshold_on_create = "auto"
 
+## The options for bloom filter in Mito engine.
+[region_engine.mito.bloom_filter_index]
+
+## Whether to create the bloom filter on flush.
+## - `auto`: automatically (default)
+## - `disable`: never
+create_on_flush = "auto"
+
+## Whether to create the bloom filter on compaction.
+## - `auto`: automatically (default)
+## - `disable`: never
+create_on_compaction = "auto"
+
+## Whether to apply the bloom filter on query
+## - `auto`: automatically (default)
+## - `disable`: never
+apply_on_query = "auto"
+
+## Memory threshold for bloom filter creation.
+## - `auto`: automatically determine the threshold based on the system memory size (default)
+## - `unlimited`: no memory limit
+## - `[size]` e.g. `64MB`: fixed memory threshold
+mem_threshold_on_create = "auto"
+
 [region_engine.mito.memtable]
 ## Memtable type.
 ## - `time_series`: time-series memtable
diff --git a/src/index/src/bloom_filter/creator.rs b/src/index/src/bloom_filter/creator.rs
index da95334782a7..db79983e6274 100644
--- a/src/index/src/bloom_filter/creator.rs
+++ b/src/index/src/bloom_filter/creator.rs
@@ -320,7 +320,7 @@ mod tests {
     #[tokio::test]
     async fn test_bloom_filter_creator_batch_push() {
         let mut writer = Cursor::new(Vec::new());
-        let mut creator = BloomFilterCreator::new(
+        let mut creator: BloomFilterCreator = BloomFilterCreator::new(
             2,
             Arc::new(MockExternalTempFileProvider::new()),
             Arc::new(AtomicUsize::new(0)),
diff --git a/src/mito2/src/access_layer.rs b/src/mito2/src/access_layer.rs
index 752b36fd1e0b..0d6204d02416 100644
--- a/src/mito2/src/access_layer.rs
+++ b/src/mito2/src/access_layer.rs
@@ -22,7 +22,7 @@ use store_api::metadata::RegionMetadataRef;
 
 use crate::cache::write_cache::SstUploadRequest;
 use crate::cache::CacheManagerRef;
-use crate::config::{FulltextIndexConfig, InvertedIndexConfig};
+use crate::config::{BloomFilterConfig, FulltextIndexConfig, InvertedIndexConfig};
 use crate::error::{CleanDirSnafu, DeleteIndexSnafu, DeleteSstSnafu, OpenDalSnafu, Result};
 use crate::read::Source;
 use crate::region::options::IndexOptions;
@@ -154,6 +154,7 @@ impl AccessLayer {
                 index_options: request.index_options,
                 inverted_index_config: request.inverted_index_config,
                 fulltext_index_config: request.fulltext_index_config,
+                bloom_filter_index_config: request.bloom_filter_index_config,
             }
             .build()
             .await;
@@ -198,6 +199,7 @@ pub(crate) struct SstWriteRequest {
     pub(crate) index_options: IndexOptions,
     pub(crate) inverted_index_config: InvertedIndexConfig,
     pub(crate) fulltext_index_config: FulltextIndexConfig,
+    pub(crate) bloom_filter_index_config: BloomFilterConfig,
 }
 
 pub(crate) async fn new_fs_cache_store(root: &str) -> Result<ObjectStore> {
diff --git a/src/mito2/src/cache/write_cache.rs b/src/mito2/src/cache/write_cache.rs
index fc9972de5305..18fe41c5f614 100644
--- a/src/mito2/src/cache/write_cache.rs
+++ b/src/mito2/src/cache/write_cache.rs
@@ -125,6 +125,7 @@ impl WriteCache {
             index_options: write_request.index_options,
             inverted_index_config: write_request.inverted_index_config,
             fulltext_index_config: write_request.fulltext_index_config,
+            bloom_filter_index_config: write_request.bloom_filter_index_config,
         }
         .build()
         .await;
@@ -378,6 +379,7 @@ mod tests {
             index_options: IndexOptions::default(),
             inverted_index_config: Default::default(),
             fulltext_index_config: Default::default(),
+            bloom_filter_index_config: Default::default(),
         };
 
         let upload_request = SstUploadRequest {
@@ -470,6 +472,7 @@ mod tests {
             index_options: IndexOptions::default(),
             inverted_index_config: Default::default(),
             fulltext_index_config: Default::default(),
+            bloom_filter_index_config: Default::default(),
         };
         let write_opts = WriteOptions {
             row_group_size: 512,
diff --git a/src/mito2/src/compaction/compactor.rs b/src/mito2/src/compaction/compactor.rs
index e7d5e779b675..58425f4d79e3 100644
--- a/src/mito2/src/compaction/compactor.rs
+++ b/src/mito2/src/compaction/compactor.rs
@@ -301,6 +301,8 @@ impl Compactor for DefaultCompactor {
             let merge_mode = compaction_region.current_version.options.merge_mode();
             let inverted_index_config = compaction_region.engine_config.inverted_index.clone();
             let fulltext_index_config = compaction_region.engine_config.fulltext_index.clone();
+            let bloom_filter_index_config =
+                compaction_region.engine_config.bloom_filter_index.clone();
             futs.push(async move {
                 let reader = CompactionSstReaderBuilder {
                     metadata: region_metadata.clone(),
@@ -325,6 +327,7 @@ impl Compactor for DefaultCompactor {
                             index_options,
                             inverted_index_config,
                             fulltext_index_config,
+                            bloom_filter_index_config,
                         },
                         &write_opts,
                     )
diff --git a/src/mito2/src/config.rs b/src/mito2/src/config.rs
index 7a1574c850ae..1c06fb3f1aa0 100644
--- a/src/mito2/src/config.rs
+++ b/src/mito2/src/config.rs
@@ -117,6 +117,8 @@ pub struct MitoConfig {
     pub inverted_index: InvertedIndexConfig,
     /// Full-text index configs.
     pub fulltext_index: FulltextIndexConfig,
+    /// Bloom filter index configs.
+    pub bloom_filter_index: BloomFilterConfig,
 
     /// Memtable config
     pub memtable: MemtableConfig,
@@ -155,6 +157,7 @@ impl Default for MitoConfig {
             index: IndexConfig::default(),
             inverted_index: InvertedIndexConfig::default(),
             fulltext_index: FulltextIndexConfig::default(),
+            bloom_filter_index: BloomFilterConfig::default(),
             memtable: MemtableConfig::default(),
             min_compaction_interval: Duration::from_secs(0),
         };
@@ -511,6 +514,48 @@ impl FulltextIndexConfig {
     }
 }
 
+/// Configuration options for the bloom filter.
+#[serde_as]
+#[derive(Debug, Serialize, Deserialize, Clone, PartialEq, Eq)]
+#[serde(default)]
+pub struct BloomFilterConfig {
+    /// Whether to create the index on flush: automatically or never.
+    pub create_on_flush: Mode,
+    /// Whether to create the index on compaction: automatically or never.
+    pub create_on_compaction: Mode,
+    /// Whether to apply the index on query: automatically or never.
+    pub apply_on_query: Mode,
+    /// Memory threshold for creating the index.
+    pub mem_threshold_on_create: MemoryThreshold,
+}
+
+impl Default for BloomFilterConfig {
+    fn default() -> Self {
+        Self {
+            create_on_flush: Mode::Auto,
+            create_on_compaction: Mode::Auto,
+            apply_on_query: Mode::Auto,
+            mem_threshold_on_create: MemoryThreshold::Auto,
+        }
+    }
+}
+
+impl BloomFilterConfig {
+    pub fn mem_threshold_on_create(&self) -> Option<usize> {
+        match self.mem_threshold_on_create {
+            MemoryThreshold::Auto => {
+                if let Some(sys_memory) = common_config::utils::get_sys_total_memory() {
+                    Some((sys_memory / INDEX_CREATE_MEM_THRESHOLD_FACTOR).as_bytes() as usize)
+                } else {
+                    Some(ReadableSize::mb(64).as_bytes() as usize)
+                }
+            }
+            MemoryThreshold::Unlimited => None,
+            MemoryThreshold::Size(size) => Some(size.as_bytes() as usize),
+        }
+    }
+}
+
 /// Divide cpu num by a non-zero `divisor` and returns at least 1.
 fn divide_num_cpus(divisor: usize) -> usize {
     debug_assert!(divisor > 0);
diff --git a/src/mito2/src/engine.rs b/src/mito2/src/engine.rs
index 98160eadc46a..71caf363c02c 100644
--- a/src/mito2/src/engine.rs
+++ b/src/mito2/src/engine.rs
@@ -433,7 +433,7 @@ impl EngineInner {
         .with_parallel_scan_channel_size(self.config.parallel_scan_channel_size)
         .with_ignore_inverted_index(self.config.inverted_index.apply_on_query.disabled())
         .with_ignore_fulltext_index(self.config.fulltext_index.apply_on_query.disabled())
-        // .with_ignore_bloom_filter(self.config.bloom_filter_index.apply_on_query.disabled()) // TODO(ruihang): wait for #5237
+        .with_ignore_bloom_filter(self.config.bloom_filter_index.apply_on_query.disabled())
         .with_start_time(query_start);
 
         Ok(scan_region)
diff --git a/src/mito2/src/flush.rs b/src/mito2/src/flush.rs
index 64a739068ad9..dd844a7d534c 100644
--- a/src/mito2/src/flush.rs
+++ b/src/mito2/src/flush.rs
@@ -360,6 +360,7 @@ impl RegionFlushTask {
                 index_options: self.index_options.clone(),
                 inverted_index_config: self.engine_config.inverted_index.clone(),
                 fulltext_index_config: self.engine_config.fulltext_index.clone(),
+                bloom_filter_index_config: self.engine_config.bloom_filter_index.clone(),
             };
             let Some(sst_info) = self
                 .access_layer
diff --git a/src/mito2/src/read/scan_region.rs b/src/mito2/src/read/scan_region.rs
index 2ce3367b409b..5cd99fe3778e 100644
--- a/src/mito2/src/read/scan_region.rs
+++ b/src/mito2/src/read/scan_region.rs
@@ -231,7 +231,6 @@ impl ScanRegion {
 
     /// Sets whether to ignore bloom filter.
     #[must_use]
-    #[allow(dead_code)] // TODO(ruihang): waiting for #5237
     pub(crate) fn with_ignore_bloom_filter(mut self, ignore: bool) -> Self {
         self.ignore_bloom_filter = ignore;
         self
diff --git a/src/mito2/src/sst/index.rs b/src/mito2/src/sst/index.rs
index 0b2822c04a7c..dc0f0978f84c 100644
--- a/src/mito2/src/sst/index.rs
+++ b/src/mito2/src/sst/index.rs
@@ -33,7 +33,7 @@ use store_api::metadata::RegionMetadataRef;
 use store_api::storage::{ColumnId, RegionId};
 
 use crate::access_layer::OperationType;
-use crate::config::{FulltextIndexConfig, InvertedIndexConfig};
+use crate::config::{BloomFilterConfig, FulltextIndexConfig, InvertedIndexConfig};
 use crate::metrics::INDEX_CREATE_MEMORY_USAGE;
 use crate::read::Batch;
 use crate::region::options::IndexOptions;
@@ -179,6 +179,7 @@ pub(crate) struct IndexerBuilder<'a> {
     pub(crate) index_options: IndexOptions,
     pub(crate) inverted_index_config: InvertedIndexConfig,
     pub(crate) fulltext_index_config: FulltextIndexConfig,
+    pub(crate) bloom_filter_index_config: BloomFilterConfig,
 }
 
 impl<'a> IndexerBuilder<'a> {
@@ -320,7 +321,10 @@ impl<'a> IndexerBuilder<'a> {
     }
 
     fn build_bloom_filter_indexer(&self) -> Option<BloomFilterIndexer> {
-        let create = true; // TODO(zhongzc): add config for bloom filter
+        let create = match self.op_type {
+            OperationType::Flush => self.bloom_filter_index_config.create_on_flush.auto(),
+            OperationType::Compact => self.bloom_filter_index_config.create_on_compaction.auto(),
+        };
 
         if !create {
             debug!(
@@ -330,7 +334,7 @@ impl<'a> IndexerBuilder<'a> {
             return None;
         }
 
-        let mem_limit = Some(16 * 1024 * 1024); // TODO(zhongzc): add config for bloom filter
+        let mem_limit = self.bloom_filter_index_config.mem_threshold_on_create();
         let indexer = BloomFilterIndexer::new(
             self.file_id,
             self.metadata,
@@ -496,6 +500,7 @@ mod tests {
             index_options: IndexOptions::default(),
             inverted_index_config: InvertedIndexConfig::default(),
             fulltext_index_config: FulltextIndexConfig::default(),
+            bloom_filter_index_config: BloomFilterConfig::default(),
         }
         .build()
         .await;
@@ -530,12 +535,14 @@ mod tests {
                 ..Default::default()
             },
             fulltext_index_config: FulltextIndexConfig::default(),
+            bloom_filter_index_config: BloomFilterConfig::default(),
         }
         .build()
         .await;
 
         assert!(indexer.inverted_indexer.is_none());
         assert!(indexer.fulltext_indexer.is_some());
+        assert!(indexer.bloom_filter_indexer.is_some());
 
         let indexer = IndexerBuilder {
             op_type: OperationType::Compact,
@@ -544,19 +551,44 @@ mod tests {
             metadata: &metadata,
             row_group_size: 1024,
             puffin_manager: factory.build(mock_object_store()),
-            intermediate_manager: intm_manager,
+            intermediate_manager: intm_manager.clone(),
             index_options: IndexOptions::default(),
             inverted_index_config: InvertedIndexConfig::default(),
             fulltext_index_config: FulltextIndexConfig {
                 create_on_compaction: Mode::Disable,
                 ..Default::default()
             },
+            bloom_filter_index_config: BloomFilterConfig::default(),
         }
         .build()
         .await;
 
         assert!(indexer.inverted_indexer.is_some());
         assert!(indexer.fulltext_indexer.is_none());
+        assert!(indexer.bloom_filter_indexer.is_some());
+
+        let indexer = IndexerBuilder {
+            op_type: OperationType::Compact,
+            file_id: FileId::random(),
+            file_path: "test".to_string(),
+            metadata: &metadata,
+            row_group_size: 1024,
+            puffin_manager: factory.build(mock_object_store()),
+            intermediate_manager: intm_manager,
+            index_options: IndexOptions::default(),
+            inverted_index_config: InvertedIndexConfig::default(),
+            fulltext_index_config: FulltextIndexConfig::default(),
+            bloom_filter_index_config: BloomFilterConfig {
+                create_on_compaction: Mode::Disable,
+                ..Default::default()
+            },
+        }
+        .build()
+        .await;
+
+        assert!(indexer.inverted_indexer.is_some());
+        assert!(indexer.fulltext_indexer.is_some());
+        assert!(indexer.bloom_filter_indexer.is_none());
     }
 
     #[tokio::test]
@@ -581,6 +613,7 @@ mod tests {
             index_options: IndexOptions::default(),
             inverted_index_config: InvertedIndexConfig::default(),
             fulltext_index_config: FulltextIndexConfig::default(),
+            bloom_filter_index_config: BloomFilterConfig::default(),
         }
         .build()
         .await;
@@ -605,6 +638,7 @@ mod tests {
             index_options: IndexOptions::default(),
             inverted_index_config: InvertedIndexConfig::default(),
             fulltext_index_config: FulltextIndexConfig::default(),
+            bloom_filter_index_config: BloomFilterConfig::default(),
         }
         .build()
         .await;
@@ -629,6 +663,7 @@ mod tests {
             index_options: IndexOptions::default(),
             inverted_index_config: InvertedIndexConfig::default(),
             fulltext_index_config: FulltextIndexConfig::default(),
+            bloom_filter_index_config: BloomFilterConfig::default(),
         }
         .build()
         .await;
@@ -660,6 +695,7 @@ mod tests {
             index_options: IndexOptions::default(),
             inverted_index_config: InvertedIndexConfig::default(),
             fulltext_index_config: FulltextIndexConfig::default(),
+            bloom_filter_index_config: BloomFilterConfig::default(),
         }
         .build()
         .await;
diff --git a/tests-integration/tests/http.rs b/tests-integration/tests/http.rs
index fb2824790848..1e1de235a88b 100644
--- a/tests-integration/tests/http.rs
+++ b/tests-integration/tests/http.rs
@@ -955,6 +955,12 @@ apply_on_query = "auto"
 mem_threshold_on_create = "auto"
 compress = true
 
+[region_engine.mito.bloom_filter_index]
+create_on_flush = "auto"
+create_on_compaction = "auto"
+apply_on_query = "auto"
+mem_threshold_on_create = "auto"
+
 [region_engine.mito.memtable]
 type = "time_series"