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Add test data and build and remove pangolin from preprocessing #2

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6a73e06
voc build 21-1
barneypotter24 Jan 22, 2021
fcf535e
New build
barneypotter24 Jan 22, 2021
9a8cad5
Ignore test files
barneypotter24 Jan 26, 2021
1076b1d
Update large VOC include list
barneypotter24 Jan 26, 2021
bce9967
Finalize file rename
barneypotter24 Jan 26, 2021
84d5fc2
Include better handling of ZIP codes and add Ghent files
barneypotter24 Jan 26, 2021
ca39e68
Add Sam's script for converting non-nextmeta style GISAID downloads
barneypotter24 Jan 26, 2021
dedc9e8
New VOC build
barneypotter24 Jan 29, 2021
9544b2c
2021-02-02 build
barneypotter24 Feb 2, 2021
74fe973
Updates for VOC builds
barneypotter24 Feb 2, 2021
d53a588
Merge pull request #1 from hongsamL/master
barneypotter24 Feb 2, 2021
a11cbb0
Feb 4 Belgium VOC build
barneypotter24 Feb 4, 2021
899e1d8
Small changes to snakemake rules
barneypotter24 Feb 8, 2021
b223ad8
Optimize data ingest for pangolin-based standard builds
barneypotter24 Feb 10, 2021
37f92d9
VOC 2012-02-10
barneypotter24 Feb 10, 2021
387bb2b
deploy 2021-02-14 build
barneypotter24 Feb 15, 2021
7998df4
move scripts to scripts folder
hongsamL Feb 15, 2021
251a112
add test dataset and build
hongsamL Feb 16, 2021
9f246ab
remove pangolin
hongsamL Feb 16, 2021
90454fc
move output from script to results folder
hongsamL Feb 16, 2021
0511fd0
fix paths
hongsamL Feb 16, 2021
4bb3d04
Push VOC build
barneypotter24 Feb 16, 2021
c7f8f87
move scripts to scripts folder
hongsamL Feb 15, 2021
24eedb7
add test dataset and build
hongsamL Feb 16, 2021
3eb17db
remove pangolin
hongsamL Feb 16, 2021
69f16e3
move output from script to results folder
hongsamL Feb 16, 2021
d00eebe
fix paths
hongsamL Feb 16, 2021
78d4772
Merge remote-tracking branch 'origin/master' into no_pang
hongsamL Feb 16, 2021
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deploy 2021-02-14 build
  • Loading branch information
barneypotter24 committed Feb 15, 2021
commit 387bb2bdd9ada5b18c95d42b97c052953a813a68
1,232,612 changes: 624,814 additions & 607,798 deletions auspice/sars-cov-2-belgium_voc.json
76,977 changes: 39,904 additions & 37,073 deletions auspice/sars-cov-2-belgium_voc_tip-frequencies.json