From 641e42dd3c058054e941d86a620b09be83597b45 Mon Sep 17 00:00:00 2001
From: Laurent Gil <lg10@sanger.ac.uk>
Date: Tue, 21 May 2024 15:23:55 +0100
Subject: [PATCH] Fix Publication table display (mainly the header) in the
 'Latest release' page

---
 catalog/tables.py | 29 +++++++++++++++++++++++++++++
 catalog/views.py  |  2 +-
 2 files changed, 30 insertions(+), 1 deletion(-)

diff --git a/catalog/tables.py b/catalog/tables.py
index 12e60d06..c0672cd7 100644
--- a/catalog/tables.py
+++ b/catalog/tables.py
@@ -350,6 +350,35 @@ class Meta:
         template_name = 'catalog/pgs_catalog_django_table.html'
 
 
+class PublicationTable(tables.Table):
+    id = tables.Column(accessor='id', verbose_name=format_html('PGS<br/>Publication/Study<br/>ID <span>(PGP)</span>'))
+    scores_count = tables.Column(accessor='scores_count', verbose_name=format_html('PGS<br/>Developed'), orderable=False)
+    scores_evaluated = tables.Column(accessor='scores_evaluated_count', verbose_name=format_html('PGS<br/>Evaluated'), orderable=False)
+    doi = tables.Column(accessor='doi', verbose_name=format_html('Digital object identifier <span>(doi)</span>'))
+    PMID = tables.Column(accessor='PMID', verbose_name=format_html('PubMed ID<br/><span>(PMID)</span>'))
+    date_publication = tables.Column(accessor='date_publication', verbose_name=format_html('Publication<br/>Date'))
+    class Meta:
+        model = Publication
+        attrs = {
+            "data-show-columns" : "true",
+            "data-sort-name" : "id",
+            "data-page-size" : page_size,
+            "data-export-options" : '{"fileName": "pgs_latest_publications_data"}'
+        }
+        fields  = [
+            'id',
+            'scores_count',
+            'scores_evaluated',
+            'firstauthor',
+            'title',
+            'journal',
+            'date_publication',
+            'doi',
+            'PMID'
+        ]
+        template_name = 'catalog/pgs_catalog_django_table.html'
+
+
 class Browse_TraitTable(tables.Table):
     '''Table to browse Traits in the PGS Catalog'''
     label_link = Column_format_html(accessor='display_label', verbose_name=format_html('Trait <span>(ontology term label)</span>'), orderable=True)
diff --git a/catalog/views.py b/catalog/views.py
index e1fb6e34..5e7d7421 100644
--- a/catalog/views.py
+++ b/catalog/views.py
@@ -477,7 +477,7 @@ def latest_release(request):
         publication_defer = ['authors','curation_status','curation_notes']
         publication_prefetch_related = [pgs_prefetch['publication_score'], pgs_prefetch['publication_performance']]
         publications = Publication.objects.defer(*publication_defer).filter(date_released=release_date).prefetch_related(*publication_prefetch_related)
-        publications_table = Browse_PublicationTable(publications, order_by="num")
+        publications_table = PublicationTable(publications, order_by="num")
         context['publications_table'] = publications_table
         context['publications_count'] = latest_release['publication_count']