From a694495158e4afdbb11eed5e237caa7428337788 Mon Sep 17 00:00:00 2001 From: massimocianfroccaPA Date: Thu, 18 Nov 2021 13:13:14 +0000 Subject: [PATCH 01/67] Create pattern repository files for question bank --- src/config/server.js | 2 + src/resources/questionbank/dependency.js | 5 ++ .../questionbank/questionbank.controller.js | 68 +++++++++++++++++++ .../questionbank/questionbank.entity.js | 8 +++ .../questionbank/questionbank.model.js | 19 ++++++ .../questionbank/questionbank.repository.js | 19 ++++++ .../questionbank/questionbank.route.js | 40 +++++++++++ .../questionbank/questionbank.service.js | 17 +++++ 8 files changed, 178 insertions(+) create mode 100644 src/resources/questionbank/dependency.js create mode 100644 src/resources/questionbank/questionbank.controller.js create mode 100644 src/resources/questionbank/questionbank.entity.js create mode 100644 src/resources/questionbank/questionbank.model.js create mode 100644 src/resources/questionbank/questionbank.repository.js create mode 100644 src/resources/questionbank/questionbank.route.js create mode 100644 src/resources/questionbank/questionbank.service.js diff --git a/src/config/server.js b/src/config/server.js index 3fc08979..53dce783 100644 --- a/src/config/server.js +++ b/src/config/server.js @@ -254,6 +254,8 @@ app.use('/api/v1/global', require('../resources/global/global.route')); app.use('/api/v1/search-preferences', require('../resources/searchpreferences/searchpreferences.route')); +app.use('/api/v2/questionbank', require('../resources/questionbank/questionbank.route')); + initialiseAuthentication(app); // launch our backend into a port diff --git a/src/resources/questionbank/dependency.js b/src/resources/questionbank/dependency.js new file mode 100644 index 00000000..9843acd7 --- /dev/null +++ b/src/resources/questionbank/dependency.js @@ -0,0 +1,5 @@ +import QuestionbankRepository from './questionbank.repository'; +import QuestionbankService from './questionbank.service'; + +export const questionbankRepository = new QuestionbankRepository(); +export const questionbankService = new QuestionbankService(questionbankRepository); diff --git a/src/resources/questionbank/questionbank.controller.js b/src/resources/questionbank/questionbank.controller.js new file mode 100644 index 00000000..23f7a8ed --- /dev/null +++ b/src/resources/questionbank/questionbank.controller.js @@ -0,0 +1,68 @@ +import Controller from '../base/controller'; +import { logger } from '../utilities/logger'; + +const logCategory = 'questionbank'; + +export default class QuestionbankController extends Controller { + constructor(questionbankService) { + super(questionbankService); + this.questionbankService = questionbankService; + } + + async getQuestionbank(req, res) { + try { + // Extract id parameter from query string + const { id } = req.params; + // If no id provided, it is a bad request + if (!id) { + return res.status(400).json({ + success: false, + message: 'You must provide a questionbank identifier', + }); + } + // Find the questionbank + const options = { lean: true }; + const questionbank = await this.questionbankService.getQuestionbank(id, req.query, options); + // Return if no questionbank found + if (!questionbank) { + return res.status(404).json({ + success: false, + message: 'A questionbank could not be found with the provided id', + }); + } + // Return the questionbank + return res.status(200).json({ + success: true, + ...questionbank + }); + } catch (err) { + // Return error response if something goes wrong + console.error(err.message); + return res.status(500).json({ + success: false, + message: 'A server error occurred, please try again', + }); + } + } + + async getQuestionbanks(req, res) { + try { + // Find the relevant questionbanks + const questionbanks = await this.questionbankService.getQuestionbanks(req.query).catch(err => { + logger.logError(err, logCategory); + }); + // Return the questionbanks + return res.status(200).json({ + success: true, + data: questionbanks, + }); + } catch (err) { + // Return error response if something goes wrong + logger.logError(err, logCategory); + return res.status(500).json({ + success: false, + message: 'A server error occurred, please try again', + }); + } + } +} diff --git a/src/resources/questionbank/questionbank.entity.js b/src/resources/questionbank/questionbank.entity.js new file mode 100644 index 00000000..9836a64b --- /dev/null +++ b/src/resources/questionbank/questionbank.entity.js @@ -0,0 +1,8 @@ +import Entity from '../base/entity'; + +export default class QuestionbankClass extends Entity { + constructor(obj) { + super(); + Object.assign(this, obj); + } +} diff --git a/src/resources/questionbank/questionbank.model.js b/src/resources/questionbank/questionbank.model.js new file mode 100644 index 00000000..244e91d5 --- /dev/null +++ b/src/resources/questionbank/questionbank.model.js @@ -0,0 +1,19 @@ +import { model, Schema } from 'mongoose'; + +import QuestionbankClass from './questionbank.entity'; + +const questionbankSchema = new Schema( + { + // New object properties here + }, + { + timestamps: true, + toJSON: { virtuals: true }, + toObject: { virtuals: true }, + } +); + +// Load entity class +questionbankSchema.loadClass(QuestionbankClass); + +export const Questionbank = model('Questionbank', questionbankSchema); \ No newline at end of file diff --git a/src/resources/questionbank/questionbank.repository.js b/src/resources/questionbank/questionbank.repository.js new file mode 100644 index 00000000..4558938f --- /dev/null +++ b/src/resources/questionbank/questionbank.repository.js @@ -0,0 +1,19 @@ +import Repository from '../base/repository'; +import { Questionbank } from './questionbank.model'; +import constants from '../utilities/constants.util'; + +export default class QuestionbankRepository extends Repository { + constructor() { + super(Questionbank); + this.questionbank = Questionbank; + } + + async getQuestionbank(query, options) { + return this.findOne(query, options); + } + + async getQuestionbanks(query) { + const options = { lean: true }; + return this.find(query, options); + } +} diff --git a/src/resources/questionbank/questionbank.route.js b/src/resources/questionbank/questionbank.route.js new file mode 100644 index 00000000..c9508d7d --- /dev/null +++ b/src/resources/questionbank/questionbank.route.js @@ -0,0 +1,40 @@ +import express from 'express'; +import passport from 'passport'; +import { isUndefined } from 'lodash'; +import QuestionbankController from './questionbank.controller'; +import { questionbankService } from './dependency'; +import { logger } from '../utilities/logger'; + +const router = express.Router(); +const questionbankController = new QuestionbankController(questionbankService); +const logCategory = 'questionbank'; + +const validateViewRequest = (req, res, next) => { + const { teamId } = req.params; + if (isUndefined(teamId)) return res.status(400).json({ success: false, message: 'You must provide a valid teamId' }); + + next(); +}; + +const authorizeView = (req, res, next) => {}; + +// @route GET /api/v1/questionbanks/teamId +// @desc Returns a questionbank based on ID of the publisher provided +// @access Public +router.get( + '/:teamId', + passport.authenticate('jwt'), + validateViewRequest, + authorizeView, + logger.logRequestMiddleware({ logCategory, action: 'Viewed questionbank data' }), + (req, res) => questionbankController.getQuestionbank(req, res) +); + +// @route GET /api/v1/questionbanks +// @desc Returns a collection of questionbanks based on supplied query parameters +// @access Public +router.get('/', logger.logRequestMiddleware({ logCategory, action: 'Viewed questionbanks data' }), (req, res) => + questionbankController.getQuestionbanks(req, res) +); + +module.exports = router; diff --git a/src/resources/questionbank/questionbank.service.js b/src/resources/questionbank/questionbank.service.js new file mode 100644 index 00000000..c39a0b0a --- /dev/null +++ b/src/resources/questionbank/questionbank.service.js @@ -0,0 +1,17 @@ +export default class QuestionbankService { + constructor(questionbankRepository) { + this.questionbankRepository = questionbankRepository; + } + + getQuestionbank(id, query = {}, options = {}) { + // Protect for no id passed + if (!id) return; + + query = { ...query, id }; + return this.questionbankRepository.getQuestionbank(query, options); + } + + getQuestionbanks(query = {}) { + return this.questionbankRepository.getQuestionbanks(query); + } +} From bed06d1ba5c8f45f96f53c79c4aa1129c8b8f95a Mon Sep 17 00:00:00 2001 From: massimocianfroccaPA Date: Mon, 22 Nov 2021 17:24:58 +0000 Subject: [PATCH 02/67] Add first version of GET question bank API --- .../schema/datarequest.schemas.model.js | 76 +- src/resources/questionbank/dependency.js | 4 +- src/resources/questionbank/masterSchema.json | 2330 +++++++++++++++++ .../questionbank/questionbank.controller.js | 36 +- .../questionbank/questionbank.route.js | 34 +- .../questionbank/questionbank.service.js | 139 +- 6 files changed, 2552 insertions(+), 67 deletions(-) create mode 100644 src/resources/questionbank/masterSchema.json diff --git a/src/resources/datarequest/schema/datarequest.schemas.model.js b/src/resources/datarequest/schema/datarequest.schemas.model.js index d1a5eab7..01bc0d50 100644 --- a/src/resources/datarequest/schema/datarequest.schemas.model.js +++ b/src/resources/datarequest/schema/datarequest.schemas.model.js @@ -2,36 +2,48 @@ import { model, Schema } from 'mongoose'; import constants from '../../utilities/constants.util'; -const DataRequestSchemas = new Schema({ - id: Number, - status: String, - version: { - type: Number, - default: 1 - }, - dataSetId: { - type: String, - default: '', - }, - publisher: { - type: String, - default: '' - }, - formType: { - type: String, - default: constants.formTypes.Extended5Safe, - enum: Object.values(constants.formTypes) - }, - jsonSchema: { - type: Object, - default: {} - }, - isCloneable: Boolean -}, { - timestamps: true -}); - - -export const DataRequestSchemaModel = model('data_request_schemas', DataRequestSchemas); - +const DataRequestSchemas = new Schema( + { + id: Number, + status: String, + version: { + type: Number, + default: 1, + }, + dataSetId: { + type: String, + default: '', + }, + publisher: { + type: String, + default: '', + }, + formType: { + type: String, + default: constants.formTypes.Extended5Safe, + enum: Object.values(constants.formTypes), + }, + jsonSchema: { + type: Object, + default: {}, + }, + isCloneable: Boolean, + guidance: { + type: Object, + default: {}, + }, + questionStatus: { + type: Object, + default: {}, + }, + countOfChanges: { + type: Number, + default: 0, + }, + }, + { + timestamps: true, + } +); +export const DataRequestSchemaModel = model('data_request_schemas', DataRequestSchemas); diff --git a/src/resources/questionbank/dependency.js b/src/resources/questionbank/dependency.js index 9843acd7..49b21029 100644 --- a/src/resources/questionbank/dependency.js +++ b/src/resources/questionbank/dependency.js @@ -1,5 +1,7 @@ import QuestionbankRepository from './questionbank.repository'; import QuestionbankService from './questionbank.service'; +import { publisherService } from '../publisher/dependency'; +import { globalService } from '../global/dependency'; export const questionbankRepository = new QuestionbankRepository(); -export const questionbankService = new QuestionbankService(questionbankRepository); +export const questionbankService = new QuestionbankService(questionbankRepository, publisherService, globalService); diff --git a/src/resources/questionbank/masterSchema.json b/src/resources/questionbank/masterSchema.json new file mode 100644 index 00000000..f637b004 --- /dev/null +++ b/src/resources/questionbank/masterSchema.json @@ -0,0 +1,2330 @@ +{ + "_id": { "$oid": "615f1c4be27d54d9fdc494fb" }, + "localeId": "en-gb", + "__v": { "$numberInt": "0" }, + "createdAt": { "$date": { "$numberLong": "1633623114800" } }, + "entry": { + "name": "dataUtility", + "items": [ + { + "key": "allowable_uses", + "dimension": "Allowable uses", + "category": "Access & Provision", + "definition": "Allowable dataset usages as per the licencing agreement, following ethical and IG approval", + "includeInWizard": true, + "wizardStepTitle": "Allowable uses", + "wizardStepDescription": "Please select the identifier that is most relevant to you (optional)", + "wizardStepOrder": { "$numberInt": "1" }, + "wizardStepType": "radio", + "entries": [ + { + "id": { "$oid": "615f1c4a70e33243450fdf6a" }, + "displayOrder": { "$numberInt": "1" }, + "label": "Academic research", + "impliedValues": ["platinum", "gold", "silver", "bronze"] + }, + { + "id": { "$oid": "615f1c4a70e3320a980fdf6b" }, + "displayOrder": { "$numberInt": "2" }, + "label": "Student / educational project", + "impliedValues": ["platinum", "silver", "gold", "bronze"] + }, + { + "id": { "$oid": "615f1c4a70e332c6150fdf6c" }, + "displayOrder": { "$numberInt": "3" }, + "label": "Charitable or non-profit project", + "impliedValues": ["platinum", "gold", "silver"] + }, + { + "id": { "$oid": "615f1c4a70e33284ae0fdf6d" }, + "displayOrder": { "$numberInt": "4" }, + "label": "Commercial project", + "impliedValues": ["platinum", "gold"] + } + ] + }, + { + "key": "time_lag", + "dimension": "Time Lag", + "category": "Access & Provision", + "definition": "Lag between the data being collected and added to the dataset", + "includeInWizard": true, + "wizardStepTitle": "Time lag", + "wizardStepDescription": "What is the maximum acceptable time delay from the data being generated to entering the dataset? (optional)", + "wizardStepOrder": { "$numberInt": "2" }, + "wizardStepType": "radio", + "entries": [ + { + "id": { "$oid": "615f1c4a70e3326b190fdf6e" }, + "displayOrder": { "$numberInt": "1" }, + "definition": "Effectively real-time data", + "label": "Near real-time data", + "impliedValues": ["platinum"] + }, + { + "id": { "$oid": "615f1c4a70e332a2c60fdf6f" }, + "displayOrder": { "$numberInt": "2" }, + "definition": "Approximately 1 week", + "label": "1 week", + "impliedValues": ["platinum", "gold"] + }, + { + "id": { "$oid": "615f1c4a70e33284c10fdf70" }, + "displayOrder": { "$numberInt": "3" }, + "definition": "Approximately 1 month", + "label": "1 month", + "impliedValues": ["platinum", "gold", "silver"] + }, + { + "id": { "$oid": "615f1c4a70e332ed880fdf71" }, + "displayOrder": { "$numberInt": "4" }, + "definition": "Approximately 1 year", + "label": "1 year", + "impliedValues": ["platinum", "gold", "silver", "bronze"] + } + ] + }, + { + "key": "timeliness", + "dimension": "Timeliness", + "category": "Access & Provision", + "definition": "Average data access request timeframe", + "entries": [ + { + "id": { "$oid": "615f1c4a70e332284b0fdf72" }, + "displayOrder": { "$numberInt": "1" }, + "definition": "Less than 2 weeks", + "impliedValues": ["platinum"] + }, + { + "id": { "$oid": "615f1c4a70e332f1080fdf73" }, + "displayOrder": { "$numberInt": "2" }, + "definition": "Less than 1 month", + "impliedValues": ["gold", "platinum"] + }, + { + "id": { "$oid": "615f1c4a70e332c9210fdf74" }, + "displayOrder": { "$numberInt": "3" }, + "definition": "Less than 3 months", + "impliedValues": ["silver", "gold", "platinum"] + }, + { + "id": { "$oid": "615f1c4a70e33242ec0fdf75" }, + "displayOrder": { "$numberInt": "4" }, + "definition": "Less than 6 months", + "impliedValues": ["bronze", "silver", "gold", "platinum"] + } + ] + }, + { + "key": "data_quality_management_process", + "dimension": "Data Quality Management Process", + "category": "Technical Quality", + "definition": "The level of maturity of the data quality management processes ", + "entries": [ + { + "id": { "$oid": "615f1c4a70e332ce2f0fdf76" }, + "displayOrder": { "$numberInt": "1" }, + "definition": "Externally verified compliance with the data management plan, e.g. by ISO, CQC, ICO or other body", + "impliedValues": ["platinum"] + }, + { + "id": { "$oid": "615f1c4a70e332d3810fdf77" }, + "displayOrder": { "$numberInt": "2" }, + "definition": "Evidence that the data management plan has been implemented is available", + "impliedValues": ["silver", "platinum"] + }, + { + "id": { "$oid": "615f1c4a70e33261b60fdf78" }, + "displayOrder": { "$numberInt": "3" }, + "definition": "A documented data management plan covering collection, auditing, and management is available for the dataset", + "impliedValues": ["bronze", "silver", "platinum"] + } + ] + }, + { + "key": "pathway_coverage", + "dimension": "Pathway coverage", + "category": "Coverage", + "definition": "Representation of multi-disciplinary healthcare data", + "entries": [ + { + "id": { "$oid": "615f1c4a70e33200ba0fdf79" }, + "displayOrder": { "$numberInt": "1" }, + "definition": "Contains data across more than two tiers", + "impliedValues": ["platinum"] + }, + { + "id": { "$oid": "615f1c4a70e3320f2b0fdf7a" }, + "displayOrder": { "$numberInt": "2" }, + "definition": "Contains multimodal data or data that is linked across two tiers (e.g. primary and secondary care)", + "impliedValues": ["gold", "platinum"] + }, + { + "id": { "$oid": "615f1c4a70e33277bc0fdf7b" }, + "displayOrder": { "$numberInt": "3" }, + "definition": "Contains data from multiple specialties or services within a single tier of care", + "impliedValues": ["silver", "gold", "platinum"] + }, + { + "id": { "$oid": "615f1c4a70e33236b50fdf7c" }, + "displayOrder": { "$numberInt": "4" }, + "definition": "Contains data from a single speciality or area", + "impliedValues": ["bronze", "silver", "gold", "platinum"] + } + ] + }, + { + "key": "length_of_follow_up", + "dimension": "Length of follow up", + "category": "Coverage", + "definition": "Average timeframe in which a patient appears in a dataset (follow up period)", + "wizardStepTitle": "Length of follow up", + "wizardStepDescription": "What is the minimum required time frame for patients appearing in dataset, on average? (optional)", + "includeInWizard": true, + "wizardStepOrder": { "$numberInt": "3" }, + "wizardStepType": "radio", + "entries": [ + { + "id": { "$oid": "615f1c4a70e3327fe00fdf7d" }, + "displayOrder": { "$numberInt": "1" }, + "definition": "Between 1-6 months", + "label": "Between 1-6 months", + "impliedValues": ["platinum", "gold", "silver", "bronze"] + }, + { + "id": { "$oid": "615f1c4a70e33218480fdf7e" }, + "displayOrder": { "$numberInt": "2" }, + "definition": "Between 6-12 months", + "label": "Between 6-12 months", + "impliedValues": ["platinum", "gold", "silver"] + }, + { + "id": { "$oid": "615f1c4a70e33217000fdf7f" }, + "displayOrder": { "$numberInt": "3" }, + "definition": "Between 1-10 years", + "label": "Between 1-10 years", + "impliedValues": ["platinum", "gold"] + }, + { + "id": { "$oid": "615f1c4a70e332fb220fdf80" }, + "displayOrder": { "$numberInt": "4" }, + "definition": "More than 10 years", + "label": "More than 10 years", + "impliedValues": ["platinum"] + } + ] + }, + { + "key": "availability_of_additional_documentation_and_support", + "dimension": "Availability of additional documentation and support", + "category": "Data Documentation", + "definition": "Available dataset documentation in addition to the data dictionary", + "entries": [ + { + "id": { "$oid": "615f1c4a70e3326e4a0fdf81" }, + "displayOrder": { "$numberInt": "1" }, + "definition": "As Gold, plus support personnel available to answer questions", + "impliedValues": ["platinum"] + }, + { + "id": { "$oid": "615f1c4a70e33230810fdf82" }, + "displayOrder": { "$numberInt": "2" }, + "definition": "As Silver, plus dataset publication was supported with a journal article explaining the dataset in detail, or dataset training materials", + "impliedValues": ["gold", "platinum"] + }, + { + "id": { "$oid": "615f1c4a70e33231900fdf83" }, + "displayOrder": { "$numberInt": "3" }, + "definition": "Comprehensive ReadMe describing extracting and use of data, Dataset FAQS available, Visual data model provided", + "impliedValues": ["silver", "gold", "platinum"] + }, + { + "id": { "$oid": "615f1c4a70e33206280fdf84" }, + "displayOrder": { "$numberInt": "4" }, + "definition": "Past journal articles demonstrate that knowledge of the data exists", + "impliedValues": ["bronze", "silver", "gold", "platinum"] + } + ] + }, + { + "key": "data_model", + "dimension": "Data Model", + "category": "Data Documentation", + "definition": "Availability of clear, documented data model", + "includeInWizard": true, + "wizardStepTitle": "Data model", + "wizardStepDescription": "What data model requirements do you have? (optional)", + "wizardStepOrder": { "$numberInt": "4" }, + "wizardStepType": "radio", + "entries": [ + { + "id": { "$oid": "615f1c4a70e332cd770fdf85" }, + "displayOrder": { "$numberInt": "1" }, + "definition": "Known and accepted data model but some key field un-coded or free text", + "label": "Known and accepted data model, with some key fields uncoded ", + "impliedValues": ["platinum", "gold", "silver", "bronze"] + }, + { + "id": { "$oid": "615f1c4a70e3326ff80fdf86" }, + "displayOrder": { "$numberInt": "2" }, + "definition": "Key fields codified using a local standard", + "label": "Key fields coded using local standard", + "impliedValues": ["platinum", "gold", "silver"] + }, + { + "id": { "$oid": "615f1c4a70e332dffc0fdf87" }, + "displayOrder": { "$numberInt": "3" }, + "definition": "Key fields codified using a national or international standard", + "label": "Key fields coded using national/international standard", + "impliedValues": ["platinum", "gold"] + }, + { + "id": { "$oid": "615f1c4a70e33265420fdf88" }, + "displayOrder": { "$numberInt": "4" }, + "definition": "Data Model conforms to a national standard and key fields codified using a national/international standard", + "label": "Model conforms to national standard and key fields coded to national/internal standard", + "impliedValues": ["platinum"] + } + ] + }, + { + "key": "data_dictionary", + "dimension": "Data Dictionary", + "category": "Data Documentation", + "definition": "Provided documented data dictionary and terminologies", + "entries": [ + { + "id": { "$oid": "615f1c4a70e3327e410fdf89" }, + "displayOrder": { "$numberInt": "1" }, + "definition": "Dictionary is based on international standards and includes mapping", + "impliedValues": ["platinum"] + }, + { + "id": { "$oid": "615f1c4a70e332c0710fdf8a" }, + "displayOrder": { "$numberInt": "2" }, + "definition": "Dictionary relates to national definitions", + "impliedValues": ["gold", "platinum"] + }, + { + "id": { "$oid": "615f1c4a70e332cf5c0fdf8b" }, + "displayOrder": { "$numberInt": "3" }, + "definition": "Definitions compiled into local data dictionary which is available online", + "impliedValues": ["silver", "gold", "platinum"] + }, + { + "id": { "$oid": "615f1c4a70e33286440fdf8c" }, + "displayOrder": { "$numberInt": "4" }, + "definition": "Data definitions available", + "impliedValues": ["bronze", "silver", "gold", "platinum"] + } + ] + }, + { + "key": "provenance", + "dimension": "Provenance", + "category": "Data Documentation", + "definition": "Clear description of source and history of the dataset, providing a \"transparent data pipeline\"", + "includeInWizard": true, + "wizardStepTitle": "Provenance", + "wizardStepDescription": "To what level of detail do you require the origin of the dataset to be documented? (optional)", + "wizardStepOrder": { "$numberInt": "5" }, + "wizardStepType": "radio", + "entries": [ + { + "id": { "$oid": "615f1c4a70e33250010fdf8d" }, + "displayOrder": { "$numberInt": "1" }, + "definition": "Source of the dataset is documented", + "label": "Dataset source documented", + "impliedValues": ["platinum", "gold", "silver", "bronze"] + }, + { + "id": { "$oid": "615f1c4a70e33244eb0fdf8e" }, + "displayOrder": { "$numberInt": "2" }, + "definition": "Source of the dataset and any transformations, rules and exclusions documented", + "label": "Dataset source, any transformations, rule and exclusions documented", + "impliedValues": ["platinum", "gold", "silver"] + }, + { + "id": { "$oid": "615f1c4a70e33229a80fdf8f" }, + "displayOrder": { "$numberInt": "3" }, + "definition": "All original data items listed, all transformations, rules and exclusion listed and impact of these", + "label": "All original data items, transformations, rules, exclusions and impact listed", + "impliedValues": ["platinum", "gold"] + }, + { + "id": { "$oid": "615f1c4a70e33231780fdf90" }, + "displayOrder": { "$numberInt": "4" }, + "definition": "Ability to view earlier versions, including versions before any transformations have been applied data (in line with deidentification and IG approval) and review the impact of each stage of data cleaning", + "label": "Earlier and 'raw' versions and the impact of each stage of data cleaning", + "impliedValues": ["platinum"] + } + ] + }, + { + "includeInWizard": true, + "wizardStepTitle": "Search terms", + "wizardStepDescription": "Please type in any relevant search terms to refine your search (optional)", + "wizardStepOrder": { "$numberInt": "6" }, + "wizardStepType": "search", + "entries": [] + }, + { + "key": "linkages", + "dimension": "Linkages", + "category": "Value & Interest", + "definition": "Ability to link with other datasets", + "entries": [ + { + "id": { "$oid": "615f1c4a70e332ffaf0fdf91" }, + "displayOrder": { "$numberInt": "1" }, + "definition": "Existing linkage with reusable or downstream approvals", + "impliedValues": ["platinum"] + }, + { + "id": { "$oid": "615f1c4a70e3323aca0fdf92" }, + "displayOrder": { "$numberInt": "2" }, + "definition": "List of restrictions on the type of linkages detailed. List of previously successful dataset linkages performed, with navigable links to linked datasets via at DOI/URL", + "impliedValues": ["gold", "platinum"] + }, + { + "id": { "$oid": "615f1c4a70e33237280fdf93" }, + "displayOrder": { "$numberInt": "3" }, + "definition": "Available linkages outlined and/or List of datasets previously successfully linked provided", + "impliedValues": ["silver", "gold", "platinum"] + }, + { + "id": { "$oid": "615f1c4a70e332e92d0fdf94" }, + "displayOrder": { "$numberInt": "4" }, + "definition": "Identifiers to demonstrate ability to link to other datasets", + "impliedValues": ["bronze", "silver", "gold", "platinum"] + } + ] + }, + { + "key": "data_enrichments", + "dimension": "Data Enrichments", + "category": "Value & Interest", + "definition": "Data sources enriched with annotations, image labels, phenomes, derivations, NLP derived data labels", + "entries": [ + { + "id": { "$oid": "615f1c4a70e33271010fdf95" }, + "displayOrder": { "$numberInt": "1" }, + "definition": "The data include additional derived fields, or enriched data", + "impliedValues": ["platinum"] + }, + { + "id": { "$oid": "615f1c4a70e33264900fdf96" }, + "displayOrder": { "$numberInt": "2" }, + "definition": "The data include additional derived fields, or enriched data used by other available data sources", + "impliedValues": ["gold", "platinum"] + }, + { + "id": { "$oid": "615f1c4a70e33233050fdf97" }, + "displayOrder": { "$numberInt": "3" }, + "definition": "The derived fields or enriched data were generated from, or used by, a peer reviewed algorithm", + "impliedValues": ["silver", "gold", "platinum"] + }, + { + "id": { "$oid": "615f1c4a70e332ea210fdf98" }, + "displayOrder": { "$numberInt": "4" }, + "definition": "The data includes derived fields or enriched data from a national report", + "impliedValues": ["bronze", "silver", "gold", "platinum"] + } + ] + } + ] + }, + "languageCode": "en", + "updatedAt": { "$date": { "$numberLong": "1633623114800" } }, + "masterSchema": { + "pages": [ + { + "active": true, + "description": "Who is going to be accessing the data?\n\nSafe People should have the right motivations for accessing research data and understand the legal and ethical considerations when using data that may be sensitive or confidential. Safe People should also have sufficient skills, knowledge and experience to work with the data effectively. Researchers may need to undergo specific training or accreditation before accessing certain data or research environments and demonstrate that they are part of a bona fide research organisation.\n\nThe purpose of this section is to ensure that:\n- details of people who will be accessing the data and the people who are responsible for completing the application are identified\n- any individual or organisation that intends to access the data requested is identified\n- all identified individuals have the necessary accreditation and/or expertise to work with the data effectively.", + "title": "Safe people", + "pageId": "safepeople" + }, + { + "pageId": "safeproject", + "description": "What is the purpose of accessing the data?\n\nSafe projects are those that have a valid research purpose with a defined public benefit. \nFor access to data to be granted the researchers need to demonstrate that their proposal is an appropriate and ethical use of the data, and that it is intended to deliver clear public benefits. The purpose of this section is to ensure that:\n- the project rationale is explained in lay terms\n- the research purpose has a defined public benefit. This can be new knowledge, new treatments, improved pathways of care, new techniques of training staff. \n- how the data requested will be used to achieve the project objectives is articulated.", + "active": false, + "title": "Safe project" + }, + { + "pageId": "safedata", + "description": "Safe data ensure that researchers have a clear legal basis for accessing the data and do not inadvertently learn something about the data subjects during the course of their analysis, minimising the risks of re-identification.\nThe minimisation of this risk could be achieved by removing direct identifiers, aggregating values, banding variables, or other statistical techniques that may make re-identification more difficult. Sensitive or confidential data could not be considered to be completely safe because of the residual risk to a data subject’s confidentiality. Hence other limitations on access will need to be applied.\n\nThe purpose of this section is to ensure that: \n- there is a clear legal basis for accessing the requested data\n- the data requested is proportionate to the requirement of the project \n- all data requested is necessary in order to achieve the public benefit declared \n- data subjects cannot be identified by your team by cross-referencing datasets from anywhere else.", + "active": false, + "title": "Safe data" + }, + { + "active": false, + "description": "Safe settings are analytics environments where researchers can access and analyse the requested datasets in a safe and ethical way. Safe settings encompass the physical environment and procedural arrangements such as the supervision and auditing regimes. For safe settings, the likelihood of both deliberate and accidental disclosure needs to be explicitly considered.\n\nThe purpose of this section is to ensure that:\n\n- researchers access requested data in a secure and controlled setting such as a Trusted Research Environment (TRE) that limits the unauthorised use of the data\n- practical controls and appropriate restrictions are in place if researchers access data though non-TRE environment. There may be requirements that data is held on restricted access servers, encrypted and only decrypted at the point of use.", + "title": "Safe settings", + "pageId": "safesettings" + }, + { + "pageId": "safeoutputs", + "description": "Safe outputs ensure that all research outputs cannot be used to identify data subjects. They typically include ‘descriptive statistics’ that have been sufficiently aggregated such that identification is near enough impossible, and modelled outputs which are inherently non-confidential. The purpose of this section is to ensure that:\n\n- controls are in place to minimise risks associated with planned outputs and publications \n- the researchers aim to openly publish their results to enable use, scrutiny and further research.", + "active": false, + "title": "Safe outputs" + } + ], + "formPanels": [ + { "pageId": "safepeople", "index": { "$numberDouble": "1.0" }, "panelId": "primaryapplicant" }, + { "index": { "$numberDouble": "2.0" }, "pageId": "safepeople", "panelId": "safepeople-otherindividuals" }, + { "index": { "$numberDouble": "3.0" }, "pageId": "safeproject", "panelId": "safeproject-aboutthisapplication" }, + { "pageId": "safeproject", "index": { "$numberDouble": "4.0" }, "panelId": "safeproject-projectdetails" }, + { "panelId": "safeproject-funderinformation", "index": { "$numberDouble": "5.0" }, "pageId": "safeproject" }, + { "panelId": "safeproject-sponsorinformation", "pageId": "safeproject", "index": { "$numberDouble": "6.0" } }, + { "panelId": "safeproject-declarationofinterest", "index": { "$numberDouble": "7.0" }, "pageId": "safeproject" }, + { "pageId": "safeproject", "index": { "$numberDouble": "8.0" }, "panelId": "safeproject-intellectualproperty" }, + { "panelId": "safedata-datafields", "pageId": "safedata", "index": { "$numberDouble": "9.0" } }, + { "pageId": "safedata", "index": { "$numberDouble": "10.0" }, "panelId": "safedata-otherdatasetsintentiontolinkdata" }, + { "panelId": "safedata-lawfulbasis", "index": { "$numberDouble": "11.0" }, "pageId": "safedata" }, + { "pageId": "safedata", "index": { "$numberDouble": "12.0" }, "panelId": "safedata-confidentialityavenue" }, + { "pageId": "safedata", "index": { "$numberDouble": "13.0" }, "panelId": "safedata-ethicalapproval" }, + { "index": { "$numberDouble": "14.0" }, "pageId": "safesettings", "panelId": "safesettings-storageandprocessing" }, + { "pageId": "safesettings", "index": { "$numberDouble": "15.0" }, "panelId": "safesettings-dataflow" }, + { "index": { "$numberDouble": "16.0" }, "pageId": "safeoutputs", "panelId": "safeoutputs-outputsdisseminationplans" }, + { "pageId": "safeoutputs", "index": { "$numberDouble": "17.0" }, "panelId": "safeoutputs-retention" } + ], + "questionPanels": [ + { + "questionPanelHeaderText": "TODO: We need a description for this panel", + "pageId": "safepeople", + "navHeader": "Primary applicant", + "panelId": "primaryapplicant", + "panelHeader": "Please list the individuals who will have access to the data requested, or are responsible for helping complete this application form. \n\nThis section should include key contact details for the person who is leading the project; key contact details for the person(s) who (are) leading the project from other organisations. Only one contact from each organisation is needed. \n\nThe 'Primary applicant' is the person filling out the application form and principal contact for the application. This is usually the person with operational responsibility for the proposal. Each application must have details for at least one person.\n\nPlease use the file upload function if you're not able to add all individuals via the form.", + "questionSets": [{ "questionSetId": "primaryapplicant", "index": { "$numberDouble": "1.0" } }] + }, + { + "navHeader": "Other individuals", + "panelHeader": "Please list the individuals who will have access to the data requested, or are responsible for helping complete this application form. \n\nThis section should include key contact details for the person who is leading the project; key contact details for the person(s) who (are) leading the project from other organisations. Only one contact from each organisation is needed. \n\nThe 'Primary applicant' is the person filling out the application form and principal contact for the application. This is usually the person with operational responsibility for the proposal. Each application must have details for at least one person.\n\nPlease use the file upload function if you're not able to add all individuals via the form.", + "panelId": "safepeople-otherindividuals", + "questionSets": [ + { "questionSetId": "safepeople-otherindividuals", "index": { "$numberDouble": "1.0" } }, + { "index": { "$numberDouble": "100.0" }, "questionSetId": "add-safepeople-otherindividuals" } + ], + "questionPanelHeaderText": "TODO: We need a description for this panel", + "pageId": "safepeople" + }, + { + "questionPanelHeaderText": "TODO: We need a description for this panel", + "pageId": "safeproject", + "navHeader": "About this application", + "panelHeader": "", + "panelId": "safeproject-aboutthisapplication", + "questionSets": [{ "index": { "$numberDouble": "1.0" }, "questionSetId": "safeproject-aboutthisapplication" }] + }, + { + "questionSets": [{ "questionSetId": "safeproject-projectdetails", "index": { "$numberDouble": "1.0" } }], + "panelHeader": "", + "panelId": "safeproject-projectdetails", + "navHeader": "Project details", + "pageId": "safeproject", + "questionPanelHeaderText": "TODO: We need a description for this panel" + }, + { + "questionSets": [{ "index": { "$numberDouble": "1.0" }, "questionSetId": "safeproject-funderinformation" }], + "panelHeader": "A funder is the organisation or body providing the financial resource to make the project possible, and may be different to the organisation detailed in the Safe people section. Please provide details of the main funder organisations supporting this project.\n\nPlease use the file upload function if you're not able to add all funders via the form.", + "panelId": "safeproject-funderinformation", + "navHeader": "Funder information", + "pageId": "safeproject", + "questionPanelHeaderText": "TODO: We need a description for this panel" + }, + { + "navHeader": "Sponsor information", + "questionSets": [{ "questionSetId": "safeproject-sponsorinformation", "index": { "$numberDouble": "1.0" } }], + "panelId": "safeproject-sponsorinformation", + "panelHeader": "Please use the file upload function if you're not able to add all sponsors via the form.", + "pageId": "safeproject", + "questionPanelHeaderText": "TODO: We need a description for this panel" + }, + { + "panelHeader": "", + "panelId": "safeproject-declarationofinterest", + "questionSets": [{ "index": { "$numberDouble": "1.0" }, "questionSetId": "safeproject-declarationofinterest" }], + "navHeader": "Declaration of interest", + "questionPanelHeaderText": "TODO: We need a description for this panel", + "pageId": "safeproject" + }, + { + "questionPanelHeaderText": "TODO: We need a description for this panel", + "pageId": "safeproject", + "navHeader": "Intellectual property", + "panelId": "safeproject-intellectualproperty", + "panelHeader": "", + "questionSets": [{ "questionSetId": "safeproject-intellectualproperty", "index": { "$numberDouble": "1.0" } }] + }, + { + "questionSets": [{ "questionSetId": "safedata-datafields", "index": { "$numberDouble": "1.0" } }], + "panelHeader": "", + "panelId": "safedata-datafields", + "navHeader": "Data fields", + "pageId": "safedata", + "questionPanelHeaderText": "TODO: We need a description for this panel" + }, + { + "questionSets": [{ "questionSetId": "safedata-otherdatasetsintentiontolinkdata", "index": { "$numberDouble": "1.0" } }], + "panelHeader": "", + "panelId": "safedata-otherdatasetsintentiontolinkdata", + "navHeader": "Other datasets - Intention to link data", + "pageId": "safedata", + "questionPanelHeaderText": "TODO: We need a description for this panel" + }, + { + "navHeader": "Lawful basis", + "panelId": "safedata-lawfulbasis", + "panelHeader": "General Data Protection Regulation (GDPR) applies to ‘controllers’ and ‘processors’. \n\nA controller determines the purposes and means of processing personal data.\n\nA processor is responsible for processing personal data on behalf of a controller.\n \nGDPR applies to processing carried out by organisations operating within the EU. It also applies to organisations outside the EU that offer goods or services to individuals in the EU.\nGDPR does not apply to certain activities including processing covered by the Law Enforcement Directive, processing for national security purposes and processing carried out by individuals purely for personal/household activities. \n \nGDPR only applies to information which relates to an identifiable living individual. Information relating to a deceased person does not constitute personal data and therefore is not subject to the GDPR.", + "questionSets": [{ "questionSetId": "safedata-lawfulbasis", "index": { "$numberDouble": "1.0" } }], + "questionPanelHeaderText": "TODO: We need a description for this panel", + "pageId": "safedata" + }, + { + "pageId": "safedata", + "questionPanelHeaderText": "TODO: We need a description for this panel", + "navHeader": "Confidentiality avenue", + "questionSets": [{ "questionSetId": "safedata-confidentialityavenue", "index": { "$numberDouble": "1.0" } }], + "panelHeader": "", + "panelId": "safedata-confidentialityavenue" + }, + { + "pageId": "safedata", + "questionPanelHeaderText": "TODO: We need a description for this panel", + "questionSets": [{ "index": { "$numberDouble": "1.0" }, "questionSetId": "safedata-ethicalapproval" }], + "panelId": "safedata-ethicalapproval", + "panelHeader": "This section details the research and ethics approval which you have obtained or sought for your project, or otherwise provides evidence as to why such approval is not necessary. For instance, for data analysis done on data deemed anonymous, no ethical approval is explicitly needed for said analyses. \n\nWhere such approval is not in place, it is important that you demonstrate why this is the case and provide assurances if approval is pending. If you need advice on whether ethics approval is necessary, you should approach your local ethics services in the first instance. Information about UK research ethics committees and ethical opinions can be found on the Health Research Authority (HRA) website.", + "navHeader": "Ethical approval" + }, + { + "questionSets": [{ "questionSetId": "safesettings-storageandprocessing", "index": { "$numberDouble": "1.0" } }], + "panelHeader": "This section details in what way the proposal aims to store and use data, and controls in place to minimise risks associated with this storage and use. If you have indicated that your proposal seeks to store and use data exclusively through a recognised trusted research environment, then you do not need to complete this section.\n In relation to personal data, means any operation or set of operations which is performed on personal data or on sets of personal data (whether or not by automated means, such as collection, recording, organisation, structuring, storage, alteration, retrieval, consultation, use, disclosure, dissemination, restriction, erasure or destruction).\n \n All Locations where processing will be undertaken, for the avoidance of doubt storage is considered processing. For each separate organisation processing data which is not fully anonymous a separate partner organisation form must also be completed.\n \n Processing, in relation to information or data means obtaining, recording or holding the information or data or carrying out any operation or set of operations on the information or data, including—\n a) organisation, adaptation or alteration of the information or data,\n b) retrieval, consultation or use of the information or data,\n c) disclosure of the information or data by transmission,\n dissemination or otherwise making available, or\n d) alignment, combination, blocking, erasure or destruction of the information or data.\n\nPlease note that where an applicant has explicit consent from participants (such as in cohort studies) to hold linked health records, and therefore request extraction of data held by SAIL back to their own research setting, rather than be accessed solely in the remote desktop environment SAIL providers, a user may apply in these circumstances to SAIL for such extraction, with justification provided through the means of their consent documentation and ethical approval to hold such data outside of our secure setting.\n\nPlease use the file upload function if you're not able to add all organisations via the form.", + "panelId": "safesettings-storageandprocessing", + "navHeader": "Storage and processing", + "pageId": "safesettings", + "questionPanelHeaderText": "TODO: We need a description for this panel" + }, + { + "questionPanelHeaderText": "TODO: We need a description for this panel", + "pageId": "safesettings", + "panelHeader": "", + "panelId": "safesettings-dataflow", + "questionSets": [{ "questionSetId": "safesettings-dataflow", "index": { "$numberDouble": "1.0" } }], + "navHeader": "Dataflow" + }, + { + "questionPanelHeaderText": "TODO: We need a description for this panel", + "pageId": "safeoutputs", + "panelId": "safeoutputs-outputsdisseminationplans", + "panelHeader": "", + "questionSets": [{ "questionSetId": "safeoutputs-outputsdisseminationplans", "index": { "$numberDouble": "1.0" } }], + "navHeader": "Outputs dissemination plans" + }, + { + "questionPanelHeaderText": "TODO: We need a description for this panel", + "pageId": "safeoutputs", + "panelHeader": "", + "panelId": "safeoutputs-retention", + "questionSets": [{ "questionSetId": "safeoutputs-retention", "index": { "$numberDouble": "1.0" } }], + "navHeader": "Retention" + } + ], + "questionSets": [ + { + "questionSetId": "primaryapplicant", + "questionSetHeader": "Primary applicant", + "questions": [ + { + "guidance": "Please insert your full name.", + "validations": [{ "message": "Please enter a value", "type": "isLength", "params": [{ "$numberDouble": "1.0" }] }], + "questionId": "safepeopleprimaryapplicantfullname", + "input": { "type": "textInput", "required": true }, + "question": "Full name", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "question": "Job title", + "questionId": "safepeopleprimaryapplicantjobtitle", + "validations": [{ "params": [{ "$numberDouble": "1.0" }], "type": "isLength", "message": "Please enter a value" }], + "input": { "required": true, "type": "textInput" }, + "lockedQuestion": 1, + "defaultQuestion": 1 + }, + { + "questionId": "safepeopleprimaryapplicanttelephone", + "input": { "type": "textInput" }, + "question": "Telephone", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "question": "ORCID", + "input": { "type": "textInput" }, + "questionId": "safepeopleprimaryapplicantorcid", + "guidance": "ORCID provides a persistent digital identifier (an ORCID iD) that you own and control, and that distinguishes you from every other researcher. You can create an ORCID profile at https://orcid.org/. If you have an ORCID iD please include it here. ", + "lockedQuestion": 0, + "defaultQuestion": 1 + }, + { + "question": "Email", + "validations": [ + { "message": "Please enter a value", "type": "isLength", "params": [{ "$numberDouble": "1.0" }] }, + { "type": "isEmail" } + ], + "input": { "required": true, "type": "textInput" }, + "questionId": "safepeopleprimaryapplicantemail", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "input": { + "options": [ + { "value": "Yes", "text": "Yes" }, + { "value": "No", "text": "No" } + ], + "label": "Will you access the data requested?", + "type": "radioOptionsInput" + }, + "questionId": "safepeopleprimaryapplicantaccessdata", + "guidance": "Please confirm whether the applicant will be accessing the data that is being requested.", + "question": "Will you access the data requested?", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "question": "Are you an accredited researcher under the Digital Economy Act 2017?", + "input": { + "label": "Are you an accredited researcher under the Digital Economy Act 2017?", + "type": "radioOptionsInput", + "options": [ + { + "text": "Yes", + "value": "Yes", + "conditionalQuestions": [ + { + "question": "If yes, please provide your accredited researcher number.", + "input": { "type": "textareaInput" }, + "questionId": "safepeopleprimaryapplicantaccreditedresearchernumber" + } + ] + }, + { + "value": "No", + "text": "No", + "conditionalQuestions": [ + { + "questionId": "safepeopleprimaryapplicantaccreditedresearcherintention", + "input": { "type": "textareaInput" }, + "question": "If no, please specify if you are planning to become an accredited researcher." + } + ] + } + ] + }, + "questionId": "safepeopleprimaryapplicantaccreditedresearcher", + "guidance": "Depending on the type of data you are requesting, you might be required to become an accredited researcher. Most access to data in the Secure Research Service (SRS) will be by researchers accredited under the Digital Economy Act 2017 (DEA). \n\nThe UK Statistics Authority has published further information on the criteria to be met in a Research Code of Practice and Accreditation criteria. Researchers can apply for accreditation through the Research Accreditation Service (RAS).\n\nFull accredited researcher status is valid for five years. Provisional accredited researcher status is valid for one year.\n\nMore information here: https://www.gov.uk/government/publications/digital-economy-act-2017-part-5-codes-of-practice/research-code-of-practice-and-accreditation-criteria#section-b-accreditation-of-researchers-and-peer-reviewers", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "question": "Have you undertaken professional training or education on the topic of Information Governance?", + "questionId": "safepeopleprimaryapplicanttraininginformationgovernance", + "input": { + "options": [ + { + "conditionalQuestions": [ + { + "input": { "type": "textareaInput" }, + "questionId": "safepeopleprimaryapplicanttraininginformationgovernancerecent", + "guidance": "Evidence of Information Governance training is an important aspect of most applications, giving assurance that individuals are aware of the privacy, confidentiality, data protection and Caldicott implications of working with personal data. \n\nPlease ensure you have checked with the data custodian if training is required for your application.", + "question": "Please provide full details regarding the most recent training" + } + ], + "text": "Yes", + "value": "Yes" + }, + { + "text": "No", + "value": "No", + "conditionalQuestions": [ + { + "input": { "type": "textareaInput" }, + "questionId": "safepeopleprimaryapplicanttraininginformationgovernanceintention", + "guidance": "Evidence of Information Governance training is an important aspect of most applications, giving assurance that individuals are aware of the privacy, confidentiality, data protection and Caldicott implications of working with personal data. \n\nPlease ensure you have checked with the data custodian if training is required for your application.", + "question": "Please provide any details of plans to attend training, if applicable" + } + ] + } + ], + "label": "Have you undertaken professional training or education on the topic of Information Governance?", + "type": "radioOptionsInput" + }, + "guidance": "Evidence of Information Governance training is an important aspect of most applications, giving assurance that individuals are aware of the privacy, confidentiality, data protection and Caldicott implications of working with personal data. \n\nPlease ensure you have checked with the data custodian if training is required for your application.", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "questionId": "safepeopleprimaryapplicantorganisationname", + "validations": [{ "params": [{ "$numberDouble": "1.0" }], "message": "Please enter a value", "type": "isLength" }], + "input": { "type": "textInput", "required": true }, + "guidance": "Please give the full name of the organisation on whose behalf you are making the application or within which you work in your professional capacity as an applicant. This should include a parent organisation, and sub-division or department if appropriate (for example University of Edinburgh, Department of Informatics).", + "question": "Your organisation name", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "question": "Does your organisation have a current Data Security and Protection Toolkit (DSPT) published assessment?", + "validations": [{ "params": [{ "$numberDouble": "1.0" }], "type": "isLength", "message": "Please select an option" }], + "input": { + "type": "radioOptionsInput", + "required": true, + "label": "Does your organisation have a current Data Security and Protection Toolkit (DSPT) published assessment?", + "options": [ + { + "text": "Yes", + "value": "Yes", + "conditionalQuestions": [ + { + "question": "If yes, please provide the current status", + "input": { "type": "textInput" }, + "questionId": "safepeopleprimaryapplicantorganisationdatasecurityprotectionkitstatus" + }, + { + "question": "If yes, please provide the date published", + "questionId": "safepeopleprimaryapplicantorganisationdatasecurityprotectionkitdatepublished", + "input": { "type": "datePickerCustom" }, + "validations": [{ "type": "isCustomDate" }] + } + ] + }, + { "value": "No", "text": "No" } + ] + }, + "questionId": "safepeopleprimaryapplicantorganisationdatasecurityprotectionkit", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "question": "Will your organisation act as data controller?", + "input": { + "type": "radioOptionsInput", + "label": "Will your organisation act as data controller?", + "options": [ + { + "conditionalQuestions": [ + { + "question": "ICO registered number", + "questionId": "safepeopleprimaryapplicantorganisationicoregisterednumber", + "input": { "type": "textInput" } + }, + { + "question": "Registered address (line 1)", + "guidance": "Please include the organisation's business address", + "questionId": "safepeopleprimaryapplicantorganisationaddressline1", + "input": { "type": "textInput" } + }, + { + "question": "Registered address (line 2)", + "input": { "type": "textInput" }, + "questionId": "safepeopleprimaryapplicantorganisationaddressline2", + "guidance": "Please include the organisation's business address" + }, + { + "question": "City", + "guidance": "Please specify the city where the organisation is located", + "questionId": "safepeopleprimaryapplicantorganisationcity", + "input": { "type": "textInput" } + }, + { + "question": "Postcode", + "guidance": "Please include the organisation's business address postcode.", + "input": { "type": "textInput" }, + "questionId": "safepeopleprimaryapplicantorganisationpostcode" + }, + { + "question": "Country", + "questionId": "safepeopleprimaryapplicantorganisationcountry", + "input": { "type": "textInput" }, + "guidance": "Please specify the country where the organisation is located" + }, + { + "question": "Organisation type", + "label": "Organisation type", + "guidance": "Please select type of organisation, unique purpose or role of the organisation", + "questionId": "safepeopleprimaryapplicantorganisationtype", + "input": { + "options": [ + { "text": "Academic institution", "value": "Academic institution" }, + { "value": "National body", "text": "National body" }, + { "value": "Healthcare provider", "text": "Healthcare provider" }, + { "text": "Healthcare comissioner", "value": "Healthcare comissioner" }, + { "text": "Commercial body", "value": "Commercial body" }, + { "text": "Local Authority", "value": "Local Authority" }, + { "value": "Other", "text": "Other" } + ], + "type": "checkboxOptionsInput" + } + }, + { + "question": "Please provide details", + "input": { "type": "textareaInput" }, + "questionId": "safepeopleprimaryapplicantorganisationtypeotherdetails" + } + ], + "text": "Yes", + "value": "Yes" + }, + { "value": "No", "text": "No" }, + { "value": "Unsure", "text": "Unsure" } + ] + }, + "questionId": "safepeopleprimaryapplicantorganisationdatacontroller", + "guidance": "Please specify if your organisation will act as a data controller. If your organisation is not the sole data controller, please provide details of other data controllers. ", + "lockedQuestion": 1, + "defaultQuestion": 0 + } + ] + }, + { + "questionSetHeader": "Other individuals", + "questionSetId": "safepeople-otherindividuals", + "questions": [ + { + "question": "Full name", + "input": { "type": "textInput" }, + "questionId": "safepeopleotherindividualsfullname", + "guidance": "Full name is the individual's first and last name", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "question": "Job title", + "input": { "type": "textInput" }, + "questionId": "safepeopleotherindividualsjobtitle", + "guidance": "Job Title is the name of the position the individual holds within their organisation.", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "question": "Organisation", + "questionId": "safepeopleotherindividualsorganisation", + "input": { "type": "textInput" }, + "guidance": "Please include the individual's organisation.", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "input": { + "type": "checkboxOptionsInput", + "label": "Role", + "options": [ + { "value": "Principal investigator", "text": "Principal investigator" }, + { "text": "Collaborator", "value": "Collaborator" }, + { "value": "Team member", "text": "Team member" }, + { + "value": "Other", + "text": "Other", + "conditionalQuestions": [ + { + "questionId": "safepeopleotherindividualsroleotherdetails", + "input": { "type": "textareaInput" }, + "question": "If other, please specify" + } + ] + } + ] + }, + "questionId": "safepeopleotherindividualsrole", + "guidance": "A role is a function that the applicant plays. It might include role types and accreditation for those that are accessing the secure data and those that are not but would see cleared outputs from the project. \r\n (i.e. project lead, deputy lead, accrediter, researcher, peer reviewer)", + "question": "Role", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "question": "Will this person access the data requested?", + "questionId": "safepeopleotherindividualsaccessdata", + "input": { + "options": [ + { "value": "Yes", "text": "Yes" }, + { "text": "No", "value": "No" } + ], + "label": "Will this person access the data requested?", + "type": "radioOptionsInput" + }, + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "questionId": "safepeopleotherindividualsaccreditedresearcher", + "input": { + "options": [ + { + "conditionalQuestions": [ + { + "question": "If yes, please provide details", + "questionId": "safepeopleotherindividualsaccreditedresearcherdetails", + "input": { "type": "textareaInput" } + } + ], + "value": "Yes", + "text": "Yes" + }, + { "value": "No", "text": "No" } + ], + "type": "radioOptionsInput", + "label": "Is this person an accredited researcher under the Digital Economy Act 2017?" + }, + "question": "Is this person an accredited researcher under the Digital Economy Act 2017?", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "input": { + "label": "Has this person undertaken professional training or education on the topic of Information Governance?", + "type": "radioOptionsInput", + "options": [ + { + "text": "Yes", + "value": "Yes", + "conditionalQuestions": [ + { + "input": { "type": "textareaInput" }, + "questionId": "safepeopleotherindividualstraininginformationgovernancerecent", + "question": "Please provide full details regarding the most recent training" + } + ] + }, + { + "conditionalQuestions": [ + { + "questionId": "safepeopleotherindividualstraininginformationgovernanceintention", + "input": { "type": "textareaInput" }, + "question": "Please provide any details of plans to attend training, if applicable" + } + ], + "value": "No", + "text": "No" + } + ] + }, + "questionId": "safepeopleotherindividualstraininginformationgovernance", + "question": "Has this person undertaken professional training or education on the topic of Information Governance?", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "question": "Please provide evidence of this person's expertise and experience relevant to delivering the project", + "input": { "type": "textareaInput" }, + "questionId": "safepeopleotherindividualsexperience", + "lockedQuestion": 1, + "defaultQuestion": 0 + } + ] + }, + { + "questionSetId": "add-safepeople-otherindividuals", + "questions": [ + { + "input": { + "class": "btn btn-primary addButton", + "type": "buttonInput", + "action": "addRepeatableSection", + "text": "Add another individual?", + "panelId": "safepeople-otherindividuals" + }, + "questionId": "add-safepeople-otherindividuals", + "lockedQuestion": 1, + "defaultQuestion": 0 + } + ] + }, + { + "questionSetHeader": "About this application", + "questionSetId": "safeproject-aboutthisapplication", + "questions": [ + { + "question": "This application is...", + "guidance": "The application could be a new application, an extension, a renewal or amendment. For extensions or amendments, you must highlight the specific information within this form that has been updated, provide an original application number and approval date, any subsequent amendment approval dates and a summary of changes and rationale for the change to your original application and any updated approvals signatures in order for the request to be processed.", + "questionId": "safeprojectaboutthisapplicationtype", + "lockedQuestion": 1, + "defaultQuestion": 0, + "input": { + "options": [ + { "text": "A new application", "value": "A new application" }, + { + "conditionalQuestions": [ + { + "questionId": "safeprojectaboutthisapplicationtypeamendmentdetails", + "input": { "type": "textareaInput" }, + "question": "Reference or details of previous application" + } + ], + "text": "An amendment to an existing application", + "value": "An amendment to an existing application" + }, + { + "conditionalQuestions": [ + { + "question": "Reference or details of previous application", + "questionId": "safeprojectaboutthisapplicationtypeextensiondetails", + "input": { "type": "textareaInput" } + } + ], + "value": "An extension of an existing approval", + "text": "An extension of an existing approval" + }, + { + "conditionalQuestions": [ + { + "question": "Reference or details of previous application", + "questionId": "safeprojectaboutthisapplicationtyperenewaldetails", + "input": { "type": "textareaInput" } + } + ], + "text": "A renewal of an existing approval", + "value": "A renewal of an existing approval" + }, + { + "text": "Related to a previous application (approved or not)", + "value": "Related to a previous application (approved or not)", + "conditionalQuestions": [ + { + "question": "Reference or details of previous application", + "questionId": "safeprojectaboutthisapplicationtyperelatedpreviousdetails", + "input": { "type": "textareaInput" } + } + ] + } + ], + "label": "This application is...", + "type": "radioOptionsInput" + } + } + ] + }, + { + "questions": [ + { + "guidance": "The title should identify the main area of your research so that another researcher could understand if it might be relevant to their area of study. \n \nThe titles of all Accredited Research projects are published on the UK Statistics Authority website as part of the public record of DEA Accredited Researchers.", + "validations": [{ "type": "isLength", "params": [{ "$numberDouble": "3.0" }, { "$numberDouble": "300.0" }] }], + "input": { "type": "textInput", "required": true }, + "questionId": "safeprojectprojectdetailstitle", + "question": "Title of project", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "question": "What is the type of project?", + "guidance": "A research project is a discrete scientific endeavor to answer a research question or a set of research questions. \n\nA clinic audit project is designed and conducted to produce information to inform delivery of best care. It aims to find out if healthcare is being provided in line with standards to inform care providers and patients about where a service is doing well, and where there could be improvements.\n\nA service evaluation project is designed and conducted solely to define or judge current care. It seeks to assess current service to assess how well a service is achieving its intended aims.", + "questionId": "safeprojectprojectdetailstype", + "lockedQuestion": 1, + "defaultQuestion": 0, + "validations": [{ "params": [{ "$numberDouble": "1.0" }], "type": "isLength", "message": "Please select an option" }], + "input": { + "options": [ + { "value": "Research", "text": "Research" }, + { "value": "Clinic audit", "text": "Clinic audit" }, + { "value": "Service evaluation", "text": "Service evaluation" }, + { + "conditionalQuestions": [{ "question": "If other, please specify", "input": { "type": "textInput" }, "questionId": "" }], + "value": "Other", + "text": "Other" + } + ], + "type": "radioOptionsInput", + "required": true, + "label": "What is the type of project?" + } + }, + { + "questionId": "safeprojectprojectdetailsneworexisting", + "lockedQuestion": 1, + "defaultQuestion": 0, + "input": { + "label": "Is this a new study or supporting an existing study?", + "type": "radioOptionsInput", + "options": [ + { "value": "New study", "text": "New study" }, + { + "text": "Existing study", + "value": "Existing study", + "conditionalQuestions": [ + { + "question": "Evidence of existing outputs", + "label": "Evidence of existing outputs", + "input": { + "options": [ + { + "value": "I have enclosed evidence of existing outputs", + "text": "I have enclosed evidence of existing outputs" + } + ], + "type": "checkboxOptionsInput" + }, + "questionId": "safeprojectprojectdetailsneworexistingexistingoutputevidence" + } + ] + } + ] + }, + "question": "Is this a new study or supporting an existing study?" + }, + { + "guidance": "Please provide a summary of the study in language suitable for non-experts in the field and ensure that all abbreviations in technical terminology are explained.\n \nThe summary must make clear what the specific purpose is, who will be using the data (organisations rather than individual names), what will happen to the data, whether the expected outputs are in record level form, what is known to date about your chosen project including any preliminary/related analysis and background literature reviews. Please include any potential disclosure risks and how these will be addressed.", + "validations": [{ "type": "isLength", "params": [{ "$numberDouble": "10.0" }, { "$numberDouble": "2000.0" }] }], + "input": { "required": true, "type": "textareaInput" }, + "questionId": "safeprojectprojectdetailslaysummary", + "question": "Please provide a lay summary of the project (300 words)", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "validations": [{ "type": "isCustomDate" }], + "input": { "type": "datePickerCustom" }, + "questionId": "safeproject-projectdetails-startdate", + "question": "What is the anticipated start date of the project?", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "question": "Please provide anticipated end date of the project?", + "validations": [{ "type": "isCustomDate" }], + "input": { "type": "datePickerCustom" }, + "questionId": "safeproject-projectdetails-enddate", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "question": "What are the project aims, objectives and rationale?", + "validations": [{ "params": [{ "$numberDouble": "1.0" }], "type": "isLength", "message": "Please enter a value" }], + "input": { "type": "textareaInput", "required": true }, + "questionId": "safeprojectprojectdetailsaimsobjectivesrationale", + "guidance": "Please include the background to the project by describing why you are conducting the study, the specific aims and the hypotheses that you hope to test. Summarise how the data requested are required to help address these aims. Please include whether the project has used peer review and if applicable the nature of that review. ", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "input": { "type": "textareaInput", "required": true }, + "validations": [{ "type": "isLength", "message": "Please enter a value", "params": [{ "$numberDouble": "1.0" }] }], + "questionId": "safeprojectprojectdetailsdatausageforobjectives", + "guidance": "Provide full details of your research methodology. This must include justification of sample size, analyses proposed, statistical methods, additional data sources such as linked data and any plans for collaborative work. \n\nThis information will be key to assessing whether your proposal will be feasible, deliver clear public good and be an appropriate use of data. \n\nEnsure you: \n\nSpecify the method(s) of analysis you plan to use (such as regression);\n\nAs far as possible, try to articulate the outcome or dependent variable(s). \n\nIndicate the starting point for the modelling process - acknowledging that the model may evolve.\n\nExplain (where relevant) how any potential selection/causal bias will be addressed (e.g. by including a control group with information on how this control group will be created); \n\nProvide methodology references, if a non-standard methodology is proposed;\n\nInclude information about any contribution to the field of research methodology that you believe may result from your research;\n\nInclude an explanation of how your methodological approach will answer the research question(s) set out in the project when employing methods not covered by any of the above (e.g. correlation or basic descriptive analysis will only be used, noting that such analysis might be more applicable for exploratory research).", + "question": "How will the data requested be used to achieve the project objectives?", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "question": "How will your project benefit the public and what is the anticipated impact?", + "guidance": "Use this section to give the background and justification of your proposal, to demonstrate how your project will benefit the public, as well as show your understanding of the Information Governance issues specific and inherent to your project. Please make it clear how the data requested will contribute. \n\nPlease also show that you have considered how to balance the privacy risks and public benefits when designing the study. The requirement for the datasets requested should be fully justified in the light of the aims and objectives of the proposal.", + "input": { "required": true, "type": "textareaInput" }, + "validations": [{ "params": [{ "$numberDouble": "1.0" }], "type": "isLength", "message": "Please enter a value" }], + "questionId": "safeprojectprojectdetailspublicbenefitimpact", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "questionId": "safeprojectprojectdetailspublicpatientinvolvementengagement", + "input": { "type": "textareaInput" }, + "guidance": "Provide full details of proposed public engagement plans for patient and/or user group involvement. If you have no plans, please elaborate why there will not be public engagement.", + "question": "Can you provide an outline of the public and patient involvement and engagement (PPIE*) strategies of the study or a brief explanation of why they are not planned?", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "question": "Do you anticipate any risk to individual privacy, and if so what steps have you made in your proposal to mitigate these?", + "input": { "type": "textareaInput" }, + "questionId": "safeprojectprojectdetailsindividualprivacyriskmitigation", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "input": { "type": "textareaInput" }, + "questionId": "safeprojectprojectdetailsgroupindividualdisavantageavoidance", + "question": "In considering your proposal, do you believe it could disadvantage any group or individual? Explain what steps you have taken to avoid this.", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "question": "Please provide up to 6 keywords which best summarise your proposed research project.", + "input": { "type": "textareaInput" }, + "questionId": "safeprojectprojectdetailsresearchprojectsummarykeywords", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "question": "Will the research project enhance future benefit from our research database?", + "input": { "type": "textareaInput" }, + "questionId": "safeprojectprojectdetailsresearchprojectfuturedatabasebenefit", + "lockedQuestion": 1, + "defaultQuestion": 0 + } + ], + "questionSetId": "safeproject-projectdetails", + "questionSetHeader": "Project details" + }, + { + "questions": [ + { + "question": "Does your project have a funder?", + "questionId": "safeprojectfunderinformationprojecthasfunder", + "lockedQuestion": 1, + "defaultQuestion": 0, + "validations": [{ "params": [{ "$numberDouble": "1.0" }], "message": "Please select an option", "type": "isLength" }], + "input": { + "label": "Does your project have a funder?", + "required": true, + "type": "radioOptionsInput", + "options": [ + { + "text": "Yes", + "value": "Yes", + "conditionalQuestions": [ + { + "question": "Please provide the organisation name", + "input": { "type": "textInput" }, + "questionId": "safeprojectfunderinformationprojecthasfundername" + }, + { + "questionId": "add-safeproject-funderinformation", + "input": { + "action": "addRepeatableQuestions", + "questionIds": ["safeprojectfunderinformationprojecthasfundername"], + "text": "Add another organisation?", + "separatorText": "Organisation Details", + "class": "btn btn-primary addButton", + "type": "buttonInput" + } + } + ] + }, + { + "text": "No", + "value": "No", + "conditionalQuestions": [ + { + "input": { "type": "textareaInput" }, + "questionId": "safeprojectfunderinformationprojecthasnofunderfundingsource", + "question": "If no, please provide details of how you intend to fund the study" + }, + { + "label": "Please provide evidence of independent peer review", + "input": { + "type": "checkboxOptionsInput", + "options": [ + { + "value": "I confirm I have provided evidence of independent peer review.", + "text": "I confirm I have provided evidence of independent peer review." + } + ] + }, + "questionId": "safeprojectfunderinformationprojecthasnofunderindependentpeerreviewevidence", + "question": "Please provide evidence of independent peer review" + } + ] + } + ] + } + } + ], + "questionSetHeader": "Funder information", + "questionSetId": "safeproject-funderinformation" + }, + { + "questions": [ + { + "question": "Does your project have a sponsor?", + "questionId": "safeprojectsponsorinformationprojecthassponsor", + "lockedQuestion": 1, + "defaultQuestion": 0, + "validations": [{ "params": [{ "$numberDouble": "1.0" }], "type": "isLength", "message": "Please select an option" }], + "input": { + "type": "radioOptionsInput", + "required": true, + "label": "Does your project have a sponsor?", + "options": [ + { + "conditionalQuestions": [ + { + "questionId": "safeprojectsponsorinformationprojecthassponsorapplicant", + "input": { "type": "textInput" }, + "question": "Associated applicant" + }, + { + "question": "Organisation name", + "input": { "type": "textInput" }, + "questionId": "safeprojectsponsorinformationprojecthassponsororganisationname" + }, + { + "question": "Registered address (line 1)", + "questionId": "safeprojectsponsorinformationprojecthassponsororganisationaddressline1", + "input": { "type": "textInput" } + }, + { + "question": "Registered address (line 2)", + "questionId": "safeprojectsponsorinformationprojecthassponsororganisationaddressline2", + "input": { "type": "textInput" } + }, + { + "input": { "type": "textInput" }, + "questionId": "safeprojectsponsorinformationprojecthassponsororganisationcity", + "question": "City" + }, + { + "question": "Postcode", + "questionId": "safeprojectsponsorinformationprojecthassponsororganisationpostcode", + "input": { "type": "textInput" } + }, + { + "questionId": "safeprojectsponsorinformationprojecthassponsororganisationcountry", + "input": { "type": "textInput" }, + "question": "Country" + }, + { + "question": "Sector", + "questionId": "safeprojectsponsorinformationprojecthassponsororganisationsector", + "input": { "type": "textInput" }, + "guidance": "Please provide details of the sponsor's sector e.g. NHS, Academia, Charity, Industry." + }, + { + "question": "Size", + "questionId": "safeprojectsponsorinformationprojecthassponsororganisationsize", + "input": { "type": "textInput" } + }, + { + "questionId": "safeprojectsponsorinformationprojecthassponsororganisationadditionaldetails", + "input": { "type": "textInput" }, + "question": "Additional details" + }, + { + "question": "Contact full name", + "questionId": "safeprojectsponsorinformationprojecthassponsorcontactfullname", + "input": { "type": "textInput" } + }, + { + "question": "Contact email address", + "input": { "type": "textInput" }, + "questionId": "safeprojectsponsorinformationprojecthassponsorcontactemail" + }, + { + "question": "Contact telephone", + "input": { "type": "textInput" }, + "questionId": "safeprojectsponsorinformationprojecthassponsorcontacttelephone" + }, + { + "questionId": "add-safeproject-sponsorinformation", + "input": { + "action": "addRepeatableQuestions", + "text": "Add another organisation?", + "questionIds": [ + "safeprojectsponsorinformationprojecthassponsorapplicant", + "safeprojectsponsorinformationprojecthassponsororganisationname", + "safeprojectsponsorinformationprojecthassponsororganisationaddressline1", + "safeprojectsponsorinformationprojecthassponsororganisationaddressline2", + "safeprojectsponsorinformationprojecthassponsororganisationcity", + "safeprojectsponsorinformationprojecthassponsororganisationpostcode", + "safeprojectsponsorinformationprojecthassponsororganisationcountry", + "safeprojectsponsorinformationprojecthassponsororganisationsector", + "safeprojectsponsorinformationprojecthassponsororganisationsize", + "safeprojectsponsorinformationprojecthassponsororganisationadditionaldetails", + "safeprojectsponsorinformationprojecthassponsorcontactfullname", + "safeprojectsponsorinformationprojecthassponsorcontactemail", + "safeprojectsponsorinformationprojecthassponsorcontacttelephone" + ], + "separatorText": "Organisation Details", + "class": "btn btn-primary addButton", + "type": "buttonInput" + } + } + ], + "text": "Yes", + "value": "Yes" + }, + { "value": "No", "text": "No" } + ] + } + } + ], + "questionSetHeader": "Sponsor information", + "questionSetId": "safeproject-sponsorinformation" + }, + { + "questions": [ + { + "question": "Is there a commercial interest in this project?", + "questionId": "safeprojectdeclarationofinteresthascommercialinterest", + "validations": [{ "params": [{ "$numberDouble": "1.0" }], "type": "isLength", "message": "Please select an option" }], + "lockedQuestion": 1, + "defaultQuestion": 0, + "input": { + "label": "Is there a commercial interest in this project?", + "required": true, + "type": "radioOptionsInput", + "options": [ + { + "value": "Yes", + "text": "Yes", + "conditionalQuestions": [ + { + "question": "Organisation name", + "input": { "type": "textInput" }, + "questionId": "safeprojectdeclarationofinteresthascommercialinterestorganisationname" + }, + { + "question": "Registered address (line 1)", + "input": { "type": "textInput" }, + "questionId": "safeprojectdeclarationofinteresthascommercialinterestorganisationaddressline1" + }, + { + "input": { "type": "textInput" }, + "questionId": "safeprojectdeclarationofinteresthascommercialinterestorganisationaddressline2", + "question": "Registered address (line 2)" + }, + { + "question": "Postcode", + "questionId": "safeprojectdeclarationofinteresthascommercialinterestorganisationpostcode", + "input": { "type": "textInput" } + }, + { + "question": "City", + "input": { "type": "textInput" }, + "questionId": "safeprojectdeclarationofinteresthascommercialinterestorganisationcity" + }, + { + "questionId": "safeprojectdeclarationofinteresthascommercialinterestorganisationcountry", + "input": { "type": "textInput" }, + "question": "Country" + }, + { + "question": "Describe the nature of interest", + "questionId": "safeprojectdeclarationofinteresthascommercialinterestinterestnature", + "input": { "type": "textareaInput" } + }, + { + "label": "Public interest", + "questionId": "safeprojectdeclarationofinteresthascommercialinterestconfirmpublicinterest", + "input": { + "options": [ + { + "value": "I confirm that any commercial interest is public interest related.", + "text": "I confirm that any commercial interest is public interest related." + } + ], + "type": "checkboxOptionsInput" + }, + "question": "Public interest" + }, + { + "input": { + "questionIds": [ + "safeprojectdeclarationofinteresthascommercialinterestorganisationname", + "safeprojectdeclarationofinteresthascommercialinterestorganisationaddressline1", + "safeprojectdeclarationofinteresthascommercialinterestorganisationaddressline2", + "safeprojectdeclarationofinteresthascommercialinterestorganisationpostcode", + "safeprojectdeclarationofinteresthascommercialinterestorganisationcity", + "safeprojectdeclarationofinteresthascommercialinterestorganisationcountry", + "safeprojectdeclarationofinteresthascommercialinterestinterestnature", + "safeprojectdeclarationofinteresthascommercialinterestconfirmpublicinterest" + ], + "text": "Add another organisation?", + "action": "addRepeatableQuestions", + "type": "buttonInput", + "class": "btn btn-primary addButton", + "separatorText": "Organisation Details" + }, + "questionId": "add-safeproject-declarationofinterest" + } + ] + }, + { "value": "No", "text": "No" } + ] + } + } + ], + "questionSetHeader": "Declaration of interest", + "questionSetId": "safeproject-declarationofinterest" + }, + { + "questionSetHeader": "Intellectual property", + "questionSetId": "safeproject-intellectualproperty", + "questions": [ + { + "input": { "type": "textareaInput" }, + "questionId": "safeprojectintellectualpropertydevelopmentnewproductprocess", + "question": "Please indicate if the research could lead to the development of a new product/process or the generation of intellectual property." + } + ] + }, + { + "questionSetId": "safedata-datafields", + "questionSetHeader": "Data fields", + "questions": [ + { + "questionId": "safedatadatafieldsdatarequiredjustification", + "input": { "type": "textareaInput" }, + "question": "Please indicate the data necessary to conduct the study, the data fields required and the justifications for each field.", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "questionId": "safedatadatafieldsfileuploaded", + "input": { + "options": [ + { + "value": "I confirm that I have enclosed a list of datasets, fields and variables required for the study as well as justification for each field.", + "text": "I confirm that I have enclosed a list of datasets, fields and variables required for the study as well as justification for each field." + } + ], + "label": "Data fields indicated via file upload", + "type": "checkboxOptionsInput" + }, + "question": "Data fields indicated via file upload", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "guidance": "A description of precisely the criteria which define the patients to be included and to be excluded from the data extract you are requesting should be provided. \n\nThis should include precise date parameters for the start and end of the range requested (dd/mm/yy) and explain which dated project field will be used to define the requested cohort (e.g. date of admission or date of operation).", + "questionId": "safedatadatafieldsinclusionexclusioncriteria", + "validations": [{ "type": "isLength", "message": "Please enter a value", "params": [{ "$numberDouble": "1.0" }] }], + "input": { "type": "textareaInput", "required": true }, + "question": "Inclusion and exclusion criteria (including date parameters)", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "question": "Will you require periodic refreshes of the data?", + "questionId": "safedatadatafieldsdatarefreshrequired", + "validations": [{ "message": "Please select an option", "type": "isLength", "params": [{ "$numberDouble": "1.0" }] }], + "input": { + "label": "Will you require periodic refreshes of the data?", + "type": "radioOptionsInput", + "required": true, + "options": [ + { + "conditionalQuestions": [ + { + "guidance": "Please indicate how often data refreshes will be needed.", + "questionId": "safedatadatafieldsdatarefreshrequiredperiodicity", + "input": { + "label": "How often will the data refreshes be needed?", + "type": "radioOptionsInput", + "options": [ + { "text": "Every month", "value": "Every month" }, + { "text": "Every 3 months", "value": "Every 3 months" }, + { "text": "Every 6 months", "value": "Every 6 months" }, + { "text": "Every 12 months", "value": "Every 12 months" }, + { + "text": "Other", + "value": "Other", + "conditionalQuestions": [ + { + "questionId": "safedatadatafieldsdatarefreshrequiredperiodicityotherdetails", + "input": { "type": "textInput" }, + "question": "If other, please specify" + } + ] + } + ] + }, + "question": "How often will the data refreshes be needed?" + } + ], + "value": "Yes", + "text": "Yes" + }, + { "value": "No", "text": "No" } + ] + }, + "guidance": "Please indicate if data refreshes will be required.", + "lockedQuestion": 1, + "defaultQuestion": 0 + } + ] + }, + { + "questions": [ + { + "input": { + "label": "Do you intend for the datasets requested to be linked with any additional datasets, other than the datasets listed in this application?", + "type": "radioOptionsInput", + "required": true, + "options": [ + { + "text": "Yes", + "value": "Yes", + "conditionalQuestions": [ + { + "input": { "type": "textareaInput" }, + "questionId": "safedataotherdatasetslinkadditionaldatasetslinkagedetails", + "question": "Specify all datasets, organisations which will perform the linkage and how the linkage will take place." + } + ] + }, + { "value": "No", "text": "No" } + ] + }, + "validations": [{ "type": "isLength", "message": "Please select an option", "params": [{ "$numberDouble": "1.0" }] }], + "questionId": "safedataotherdatasetslinkadditionaldatasets", + "question": "Do you intend for the datasets requested to be linked with any additional datasets, other than the datasets listed in this application?", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "questionId": "safedataotherdatasetsrisksmitigations", + "input": { "type": "textareaInput" }, + "question": "Please summarise the risks/mitigations considered.", + "lockedQuestion": 1, + "defaultQuestion": 0 + } + ], + "questionSetId": "safedata-otherdatasetsintentiontolinkdata", + "questionSetHeader": "Other datasets - Intention to link data" + }, + { + "questions": [ + { + "guidance": "The lawful basis for processing are set out in Article 6 of the GDPR. At least one legal basis must apply whenever you process personal data. Please select appropriate Article 6 lawful basis. Processing shall be lawful only if and to the extent that at least one of the following applies.", + "validations": [{ "params": [{ "$numberDouble": "1.0" }], "type": "isLength", "message": "Please select an option" }], + "input": { + "required": true, + "type": "radioOptionsInput", + "label": "Article 6 lawful basis", + "options": [ + { "text": "Not applicable", "value": "Not applicable" }, + { + "value": "(a) the data subject has given consent to the processing of his or her personal data for one or more specific purposes;", + "text": "(a) the data subject has given consent to the processing of his or her personal data for one or more specific purposes;" + }, + { + "value": "(b) processing is necessary for the performance of a contract to which the data subject is party or in order to take steps at the request of the data subject prior to entering into a contract;", + "text": "(b) processing is necessary for the performance of a contract to which the data subject is party or in order to take steps at the request of the data subject prior to entering into a contract;" + }, + { + "value": "(c) processing is necessary for compliance with a legal obligation to which the controller is subject;", + "text": "(c) processing is necessary for compliance with a legal obligation to which the controller is subject;" + }, + { + "value": "(d) processing is necessary in order to protect the vital interests of the data subject or of another natural person;", + "text": "(d) processing is necessary in order to protect the vital interests of the data subject or of another natural person;" + }, + { + "value": "(e) processing is necessary for the performance of a task carried out in the public interest or in the exercise of official authority vested in the controller;", + "text": "(e) processing is necessary for the performance of a task carried out in the public interest or in the exercise of official authority vested in the controller;" + }, + { + "value": "(f) processing is necessary for the purposes of the legitimate interests pursued by the controller or by a third party, except where such interests are overridden by the interests or fundamental rights and freedoms of the data subject which require protection of personal data, in particular where the data subject is a child.", + "text": "(f) processing is necessary for the purposes of the legitimate interests pursued by the controller or by a third party, except where such interests are overridden by the interests or fundamental rights and freedoms of the data subject which require protection of personal data, in particular where the data subject is a child." + } + ] + }, + "questionId": "safedatalawfulbasisgdprarticle6basis", + "question": "Article 6 lawful basis", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "guidance": "Please provide justification for selected Article 6 lawful basis.", + "validations": [{ "params": [{ "$numberDouble": "1.0" }], "message": "Please enter a value", "type": "isLength" }], + "input": { "type": "textareaInput", "required": true }, + "questionId": "safedatalawfulbasisgdprarticle6basisjustification", + "question": "Article 6 legal basis justification", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "guidance": "Please select appropriate Article 9 conditions. \n \nProcessing of personal data revealing racial or ethnic origin, political opinions, religious or philosophical beliefs, or trade union membership, and the processing of genetic data, biometric data for the purpose of uniquely identifying a natural person, data concerning health or data concerning a natural person's sex life or sexual orientation shall be prohibited. This does not apply if one of the following applies.", + "validations": [{ "params": [{ "$numberDouble": "1.0" }], "type": "isLength", "message": "Please select an option" }], + "questionId": "safedatalawfulbasisgdprarticle9conditions", + "input": { + "label": "Article 9 conditions", + "type": "radioOptionsInput", + "required": true, + "options": [ + { "text": "Not applicable", "value": "Not applicable" }, + { + "value": "(a) the data subject has given explicit consent to the processing of those personal data for one or more specified purposes, except where Union or Member State law provide that the prohibition referred to in paragraph 1 may not be lifted by the data subject;", + "text": "(a) the data subject has given explicit consent to the processing of those personal data for one or more specified purposes, except where Union or Member State law provide that the prohibition referred to in paragraph 1 may not be lifted by the data subject;" + }, + { + "value": "(b) processing is necessary for the purposes of carrying out the obligations and exercising specific rights of the controller or of the data subject in the field of employment and social security and social protection law in so far as it is authorised by Union or Member State law or a collective agreement pursuant to Member State law providing for appropriate safeguards for the fundamental rights and the interests of the data subject;", + "text": "(b) processing is necessary for the purposes of carrying out the obligations and exercising specific rights of the controller or of the data subject in the field of employment and social security and social protection law in so far as it is authorised by Union or Member State law or a collective agreement pursuant to Member State law providing for appropriate safeguards for the fundamental rights and the interests of the data subject;" + }, + { + "text": "(c) processing is necessary to protect the vital interests of the data subject or of another natural person where the data subject is physically or legally incapable of giving consent;", + "value": "(c) processing is necessary to protect the vital interests of the data subject or of another natural person where the data subject is physically or legally incapable of giving consent;" + }, + { + "text": "(d) processing is carried out in the course of its legitimate activities with appropriate safeguards by a foundation, association or any other not-for-profit body with a political, philosophical, religious or trade union aim and on condition that the processing relates solely to the members or to former members of the body or to persons who have regular contact with it in connection with its purposes and that the personal data are not disclosed outside that body without the consent of the data subjects;", + "value": "(d) processing is carried out in the course of its legitimate activities with appropriate safeguards by a foundation, association or any other not-for-profit body with a political, philosophical, religious or trade union aim and on condition that the processing relates solely to the members or to former members of the body or to persons who have regular contact with it in connection with its purposes and that the personal data are not disclosed outside that body without the consent of the data subjects;" + }, + { + "text": "(e) processing relates to personal data which are manifestly made public by the data subject;", + "value": "(e) processing relates to personal data which are manifestly made public by the data subject;" + }, + { + "text": "(f) processing is necessary for the establishment, exercise or defence of legal claims or whenever courts are acting in their judicial capacity;", + "value": "(f) processing is necessary for the establishment, exercise or defence of legal claims or whenever courts are acting in their judicial capacity;" + }, + { + "text": "(g) processing is necessary for reasons of substantial public interest, on the basis of Union or Member State law which shall be proportionate to the aim pursued, respect the essence of the right to data protection and provide for suitable and specific measures to safeguard the fundamental rights and the interests of the data subject;", + "value": "(g) processing is necessary for reasons of substantial public interest, on the basis of Union or Member State law which shall be proportionate to the aim pursued, respect the essence of the right to data protection and provide for suitable and specific measures to safeguard the fundamental rights and the interests of the data subject;" + }, + { + "text": "(h) processing is necessary for the purposes of preventive or occupational medicine, for the assessment of the working capacity of the employee, medical diagnosis, the provision of health or social care or treatment or the management of health or social care systems and services on the basis of Union or Member State law or pursuant to contract with a health professional and subject to the conditions and safeguards referred to in paragraph 3;", + "value": "(h) processing is necessary for the purposes of preventive or occupational medicine, for the assessment of the working capacity of the employee, medical diagnosis, the provision of health or social care or treatment or the management of health or social care systems and services on the basis of Union or Member State law or pursuant to contract with a health professional and subject to the conditions and safeguards referred to in paragraph 3;" + }, + { + "value": "(i) processing is necessary for reasons of public interest in the area of public health, such as protecting against serious cross-border threats to health or ensuring high standards of quality and safety of health care and of medicinal products or medical devices, on the basis of Union or Member State law which provides for suitable and specific measures to safeguard the rights and freedoms of the data subject, in particular professional secrecy;", + "text": "(i) processing is necessary for reasons of public interest in the area of public health, such as protecting against serious cross-border threats to health or ensuring high standards of quality and safety of health care and of medicinal products or medical devices, on the basis of Union or Member State law which provides for suitable and specific measures to safeguard the rights and freedoms of the data subject, in particular professional secrecy;" + }, + { + "value": "(j) processing is necessary for archiving purposes in the public interest, scientific or historical research purposes or statistical purposes in accordance with Article 89(1) based on Union or Member State law which shall be proportionate to the aim pursued, respect the essence of the right to data protection and provide for suitable and specific measures to safeguard the fundamental rights and the interests of the data subject.", + "text": "(j) processing is necessary for archiving purposes in the public interest, scientific or historical research purposes or statistical purposes in accordance with Article 89(1) based on Union or Member State law which shall be proportionate to the aim pursued, respect the essence of the right to data protection and provide for suitable and specific measures to safeguard the fundamental rights and the interests of the data subject." + } + ] + }, + "question": "Article 9 conditions", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "question": "Article 9 legal basis justification", + "guidance": "Please provide justification for selected Article 9 conditions.", + "questionId": "safedatalawfulbasisgdprarticle9basisjustification", + "validations": [{ "message": "Please enter a value", "type": "isLength", "params": [{ "$numberDouble": "1.0" }] }], + "input": { "type": "textareaInput", "required": true }, + "lockedQuestion": 1, + "defaultQuestion": 0 + } + ], + "questionSetHeader": "Lawful basis", + "questionSetId": "safedata-lawfulbasis" + }, + { + "questionSetHeader": "Confidentiality avenue", + "questionSetId": "safedata-confidentialityavenue", + "questions": [ + { + "validations": [{ "message": "Please select an option", "type": "isLength", "params": [{ "$numberDouble": "1.0" }] }], + "questionId": "safedataconfidentialityavenuelegalbasisconfidentialinformation", + "input": { + "type": "radioOptionsInput", + "required": true, + "label": "Please provide the legal basis to process confidential information", + "options": [ + { "text": "Not applicable", "value": "Not applicable" }, + { + "conditionalQuestions": [ + { + "input": { + "type": "checkboxOptionsInput", + "options": [ + { + "value": "I have enclosed a blank copy of the patient consent form(s) and all related information sheets relevant to the time period in the data requested", + "text": "I have enclosed a blank copy of the patient consent form(s) and all related information sheets relevant to the time period in the data requested" + } + ] + }, + "questionId": "safedataconfidentialityavenueinformedconsentevidence", + "label": "Informed consent evidence", + "question": "Informed consent evidence" + } + ], + "text": "Informed consent", + "value": "Informed consent" + }, + { + "value": "Section 251 support", + "text": "Section 251 support", + "conditionalQuestions": [ + { + "input": { + "type": "checkboxOptionsInput", + "options": [ + { + "text": "I have enclosed a copy of the S251 approved amendments and any renewal letters", + "value": "I have enclosed a copy of the S251 approved amendments and any renewal letters" + } + ] + }, + "questionId": "safedataconfidentialityavenuesection251exemptionevidence", + "label": "Section 251 exemption evidence", + "question": "Section 251 exemption evidence" + }, + { + "question": "CAG reference", + "questionId": "safedataconfidentialityavenuesection251cagreference", + "input": { "type": "textInput" } + }, + { + "question": "The section 251 approval enables the applicant to", + "questionId": "safedataconfidentialityavenuesection251approvaldetails", + "input": { + "options": [ + { "text": "Hold/receive personal data", "value": "Hold/receive personal data" }, + { "text": "Transfer/access personal data", "value": "Transfer/access personal data" }, + { "value": "Operate on and link personal data", "text": "Operate on and link personal data" }, + { + "conditionalQuestions": [ + { + "question": "If other, please specify", + "input": { "type": "textInput" }, + "questionId": "safedataconfidentialityavenuesection251approvaldetailsotherdetails" + } + ], + "value": "Other", + "text": "Other" + } + ], + "type": "checkboxOptionsInput" + }, + "label": "The section 251 approval enables the applicant to" + } + ] + }, + { + "text": "Other", + "value": "Other", + "conditionalQuestions": [ + { + "question": "If other, please specify", + "questionId": "safedataconfidentialityavenuelegalbasisconfidentialinformationotherdetails", + "input": { "type": "textInput" } + } + ] + } + ] + }, + "question": "Please provide the legal basis to process confidential information", + "lockedQuestion": 1, + "defaultQuestion": 0 + } + ] + }, + { + "questions": [ + { + "question": "Do you seek for your project to be approved under the generic favourable ethical opinion of the INSIGHT Research Database (Ref: 20/WS/0087)?", + "input": { + "options": [ + { "value": "Yes", "text": "Yes" }, + { "value": "No", "text": "No" } + ], + "type": "radioOptionsInput", + "label": "Do you seek for your project to be approved under the generic favourable ethical opinion of the INSIGHT Research Database (Ref: 20/WS/0087)?" + }, + "questionId": "safedataethicsapprovalinsightresearch", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "validations": [{ "type": "isLength", "message": "Please select an option", "params": [{ "$numberDouble": "1.0" }] }], + "questionId": "safedataethicsapprovalapprovalobtained", + "input": { + "options": [ + { + "conditionalQuestions": [ + { + "guidance": "Please provide REC or other committee details.", + "input": { "type": "textInput" }, + "questionId": "safedataethicsapprovalapprovalobtainedreccommitteename", + "question": "Approval - REC committee name" + }, + { + "questionId": "safedataethicsapprovalapprovalobtainedrecreferencenumber", + "input": { "type": "textInput" }, + "question": "Approval - REC reference number" + }, + { + "question": "Approval - Other committee", + "questionId": "safedataethicsapprovalapprovalobtainedothercommittee", + "input": { "type": "textInput" } + }, + { + "label": "Evidence of REC approval", + "guidance": "Please confirm a copy of the REC referenced above has been enclosed.", + "input": { + "options": [ + { + "text": "I have enclosed a copy of the final REC approval letter and letters documenting any REC approved amendments", + "value": "I have enclosed a copy of the final REC approval letter and letters documenting any REC approved amendments" + } + ], + "type": "checkboxOptionsInput" + }, + "questionId": "safedataethicsapprovalapprovalobtainedevidenceenclosed", + "question": "Evidence of REC approval" + } + ], + "value": "Yes", + "text": "Yes" + }, + { + "text": "No", + "value": "No", + "conditionalQuestions": [ + { + "questionId": "safedataethicsapprovalapprovalobtainednotobtaineddetails", + "input": { "type": "textInput" }, + "question": "If not, please provide more details" + } + ] + }, + { + "text": "Approval pending", + "value": "Approval pending", + "conditionalQuestions": [ + { + "question": "If approval is pending, please provide more details", + "input": { "type": "textInput" }, + "questionId": "safedataethicsapprovalapprovalobtainedpendingdetails", + "guidance": "If approval is pending, please provide details." + } + ] + }, + { + "value": "Not required", + "text": "Not required", + "conditionalQuestions": [ + { + "question": "If not required, please provide details", + "guidance": "If ethics approval is not required, please explain why this is the case.", + "questionId": "safedataethicsapprovalapprovalobtainednotrequireddetails", + "input": { "type": "textInput" } + } + ] + } + ], + "label": "Has ethical approval been obtained?", + "type": "radioOptionsInput", + "required": true + }, + "guidance": "Please confirm if ethics approval has been obtained. Request for research purposes must include evidence of ethics approval or evidence that this is not required.", + "question": "Has ethical approval been obtained?", + "lockedQuestion": 1, + "defaultQuestion": 0 + } + ], + "questionSetHeader": "Ethical approval", + "questionSetId": "safedata-ethicalapproval" + }, + { + "questions": [ + { + "guidance": "Please specify if the data will be accessed within a Trusted Research Environment. ", + "input": { + "options": [ + { + "conditionalQuestions": [ + { + "guidance": "If you have selected 'Other', please specify the Trusted Research Environment.", + "input": { + "type": "radioOptionsInput", + "label": "In which Trusted Research Environment will the data be accessed?", + "options": [ + { "value": "Secure e-Research Platform (SeRP)", "text": "Secure e-Research Platform (SeRP)" }, + { "value": "NI Honest Broker Service (NI HBS)", "text": "NI Honest Broker Service (NI HBS)" }, + { "text": "Scottish National Safe Haven (SNSH)", "value": "Scottish National Safe Haven (SNSH)" }, + { + "text": "NHS Digital", + "value": "NHS Digital", + "conditionalQuestions": [ + { + "questionId": "safedatastorageandprocessingaccessmethodtrustedresearchenvironmentdspdetails", + "input": { "type": "textInput" }, + "question": "Does the applicant organisation have a DSP Toolkit? If so, please provide details including code, score and version completed." + } + ] + }, + { "text": "SAIL Databank", "value": "SAIL Databank" }, + { "value": "ONS Secure Research Service (SRS)", "text": "ONS Secure Research Service (SRS)" }, + { + "value": "Other", + "text": "Other", + "conditionalQuestions": [ + { + "question": "If other, please specify", + "questionId": "safedatastorageandprocessingaccessmethodtrustedresearchenvironmentotherdetails", + "input": { "type": "textInput" } + } + ] + } + ] + }, + "questionId": "safedatastorageandprocessingaccessmethodtrustedresearchenvironment", + "question": "In which Trusted Research Environment will the data be accessed?" + } + ], + "text": "Via a Trusted Research Environment", + "value": "Via a Trusted Research Environment" + }, + { + "conditionalQuestions": [ + { + "question": "Registered name of organisation", + "input": { "type": "textInput" }, + "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationname", + "guidance": "Please provide ICO registration details." + }, + { + "question": "Registered number", + "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationregisterednumber", + "input": { "type": "textInput" } + }, + { + "question": "Will this organisation be storing or processing the data?", + "label": "Will this organisation be storing or processing the data?", + "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationstoringorprocessing", + "input": { + "options": [ + { "value": "Storage", "text": "Storage" }, + { "text": "Processing", "value": "Processing" } + ], + "type": "checkboxOptionsInput" + } + }, + { + "label": "What type of security assurance does this organisation have in place?", + "guidance": "Adequate security assurance must be provided for all processing locations. Each organisation processing data that is not fully anonymous as part of this project must demonstrate that they have appropriate security arrangements are in place. Please confirm whether the applicant organisation has a compliant Data Security and Protection Toolkit.", + "input": { + "type": "checkboxOptionsInput", + "options": [ + { + "text": "Data security and Protection Toolkit (DSP Toolkit)", + "value": "Data security and Protection Toolkit (DSP Toolkit)", + "conditionalQuestions": [ + { + "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationsecurityassurancedsporganisationcode", + "input": { "type": "textInput" }, + "guidance": "As a data controller, the applicant's organisation should be registered with the Information Commissioner's Office (ICO). Please provide Security and Protection Toolkit (DSP Toolkit) details.", + "question": "DSP Toolkit organisation code" + }, + { + "question": "DSP Toolkit score", + "input": { "type": "textInput" }, + "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationsecurityassurancedsptoolkitscore" + }, + { + "question": "DSP Toolkit version completed", + "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationsecurityassurancedspversioncompleted", + "input": { "type": "textInput" } + } + ] + }, + { + "text": "ISO 27001", + "value": "ISO 27001", + "conditionalQuestions": [ + { + "label": "Evidence of ISO 27001", + "input": { + "options": [ + { + "text": "I have enclosed a copy of my certificate", + "value": "I have enclosed a copy of my certificate" + } + ], + "type": "checkboxOptionsInput" + }, + "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationsecurityassuranceiso27001evidence", + "question": "Evidence of ISO 27001" + } + ] + }, + { + "conditionalQuestions": [ + { + "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationsecurityassuranceslspevidence", + "input": { + "type": "checkboxOptionsInput", + "options": [ + { + "value": "I have enclosed a completed system level security policy for ODR review", + "text": "I have enclosed a completed system level security policy for ODR review" + } + ] + }, + "label": "Evidence of SLSP", + "question": "Evidence of SLSP" + } + ], + "text": "SLSP", + "value": "SLSP" + }, + { + "text": "Other", + "value": "Other", + "conditionalQuestions": [ + { + "question": "If other, please specify", + "guidance": "If you have selected 'Other', please specify the type of security assurance the organisation has put in place.", + "input": { "type": "textInput" }, + "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationsecurityassuranceotherdetails" + } + ] + } + ] + }, + "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationsecurityassurance", + "question": "What type of security assurance does this organisation have in place?" + }, + { + "questionId": "add-safesettings-storageandprocessing", + "input": { + "separatorText": "Organisation Details", + "type": "buttonInput", + "class": "btn btn-primary addButton", + "action": "addRepeatableQuestions", + "questionIds": [ + "safedatastorageandprocessingaccessmethodphysicallocationorganisationname", + "safedatastorageandprocessingaccessmethodphysicallocationorganisationregisterednumber", + "safedatastorageandprocessingaccessmethodphysicallocationorganisationstoringorprocessing", + "safedatastorageandprocessingaccessmethodphysicallocationorganisationsecurityassurance" + ], + "text": "Add another organisation?" + } + } + ], + "value": "Via transfer to a physical location (Provide details of the processing/storage organisations below)", + "text": "Via transfer to a physical location (Provide details of the processing/storage organisations below)" + } + ], + "label": "How will the data be accessed?", + "type": "checkboxOptionsInput" + }, + "questionId": "safedatastorageandprocessingaccessmethod", + "question": "How will the data be accessed?", + "lockedQuestion": 1, + "defaultQuestion": 0 + } + ], + "questionSetId": "safesettings-storageandprocessing", + "questionSetHeader": "Storage and processing" + }, + { + "questions": [ + { + "validations": [{ "params": [{ "$numberDouble": "1.0" }], "message": "Please select an option", "type": "isLength" }], + "input": { + "options": [ + { + "value": "Yes", + "text": "Yes", + "conditionalQuestions": [ + { + "question": "If yes, please provide more details", + "input": { "type": "textareaInput" }, + "questionId": "safedatadataflowdatatransferedoutsideukdetails" + } + ] + }, + { "value": "No", "text": "No" } + ], + "label": "Will the data be transferred outside of the United Kingdom?", + "type": "radioOptionsInput", + "required": true + }, + "questionId": "safedatadataflowdatatransferedoutsideuk", + "question": "Will the data be transferred outside of the United Kingdom?", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "questionId": "safedatadataflowregionsdataprocessed", + "input": { + "type": "checkboxOptionsInput", + "label": "Please specify the regions where data will be processed.", + "options": [ + { "text": "England/Wales", "value": "England/Wales" }, + { "value": "United Kingdom", "text": "United Kingdom" }, + { "value": "European Economic Area", "text": "European Economic Area" }, + { "value": "Other", "text": "Other" } + ] + }, + "question": "Please specify the regions where data will be processed.", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "input": { "type": "textareaInput" }, + "questionId": "safedatadataflowdetailedinformation", + "question": "Please provide detailed information on data flows", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "questionId": "safedatadataflowdiagramenclosed", + "input": { + "options": [{ "value": "I have enclosed a copy of the dataflow", "text": "I have enclosed a copy of the dataflow" }], + "label": "Please include a data flow diagram for the requested data and any additional datasets intended to be linked.", + "type": "checkboxOptionsInput" + }, + "question": "Please include a data flow diagram for the requested data and any additional datasets intended to be linked.", + "lockedQuestion": 1, + "defaultQuestion": 0 + } + ], + "questionSetHeader": "Dataflow", + "questionSetId": "safesettings-dataflow" + }, + { + "questions": [ + { + "question": "How will proposal findings be disseminated, to what audience and in what format?", + "questionId": "safeoutputsoutputsdisseminationplansproposalfindings", + "validations": [{ "params": [{ "$numberDouble": "1.0" }], "message": "Please enter a value", "type": "isLength" }], + "input": { "required": true, "type": "textareaInput" }, + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "validations": [{ "params": [{ "$numberDouble": "1.0" }], "message": "Please enter a value", "type": "isLength" }], + "input": { "type": "textareaInput", "required": true }, + "questionId": "safeoutputsoutputsdisseminationplansmilestones", + "question": "Please include any milestones for outputs dissemination.", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "validations": [{ "params": [{ "$numberDouble": "1.0" }], "type": "isLength", "message": "Please enter a value" }], + "input": { "type": "textareaInput", "required": true }, + "questionId": "safeoutputsoutputsdisseminationplansdisclosurecontrolpolicy", + "question": "What steps will be taken to ensure that individuals cannot be identified? Please describe what disclosure control policy will be applied.", + "lockedQuestion": 1, + "defaultQuestion": 0 + } + ], + "questionSetId": "safeoutputs-outputsdisseminationplans", + "questionSetHeader": "Outputs dissemination plans" + }, + { + "questionSetHeader": "Retention", + "questionSetId": "safeoutputs-retention", + "questions": [ + { + "question": "Please state the date until which you will retain the data", + "validations": [{ "params": [{ "$numberDouble": "1.0" }], "type": "isLength", "message": "Please enter a value" }], + "questionId": "safeoutputs-dataretention-retaindatadate", + "input": { "required": true, "type": "datePickerCustom" }, + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "input": { "type": "textareaInput" }, + "questionId": "safeoutputsdataretentionretaindatadatereason", + "question": "Please indicate the reason for this date", + "lockedQuestion": 1, + "defaultQuestion": 0 + }, + { + "input": { "type": "textareaInput" }, + "questionId": "safeoutputsdataretentionretaindataextensionpermissions", + "question": "Please provide details of any permissions that will need to apply for an extension during this period in order to retain a legal basis to hold the data (e.g. section 251)", + "lockedQuestion": 1, + "defaultQuestion": 0 + } + ] + } + ] + } +} diff --git a/src/resources/questionbank/questionbank.controller.js b/src/resources/questionbank/questionbank.controller.js index 23f7a8ed..44b4f152 100644 --- a/src/resources/questionbank/questionbank.controller.js +++ b/src/resources/questionbank/questionbank.controller.js @@ -11,39 +11,23 @@ export default class QuestionbankController extends Controller { async getQuestionbank(req, res) { try { - // Extract id parameter from query string - const { id } = req.params; - // If no id provided, it is a bad request - if (!id) { - return res.status(400).json({ - success: false, - message: 'You must provide a questionbank identifier', - }); - } - // Find the questionbank - const options = { lean: true }; - const questionbank = await this.questionbankService.getQuestionbank(id, req.query, options); - // Return if no questionbank found - if (!questionbank) { - return res.status(404).json({ - success: false, - message: 'A questionbank could not be found with the provided id', - }); - } - // Return the questionbank + const { publisherId } = req.params; + + const result = await this.questionbankService.getQuestionBankInfo(publisherId); + return res.status(200).json({ success: true, - ...questionbank + result, }); } catch (err) { - // Return error response if something goes wrong - console.error(err.message); - return res.status(500).json({ + // Return error response if something goes wrong + console.error(err.message); + return res.status(500).json({ success: false, message: 'A server error occurred, please try again', }); - } - } + } + } async getQuestionbanks(req, res) { try { diff --git a/src/resources/questionbank/questionbank.route.js b/src/resources/questionbank/questionbank.route.js index c9508d7d..55632d64 100644 --- a/src/resources/questionbank/questionbank.route.js +++ b/src/resources/questionbank/questionbank.route.js @@ -1,6 +1,6 @@ import express from 'express'; import passport from 'passport'; -import { isUndefined } from 'lodash'; +import { isUndefined, isNull } from 'lodash'; import QuestionbankController from './questionbank.controller'; import { questionbankService } from './dependency'; import { logger } from '../utilities/logger'; @@ -9,20 +9,40 @@ const router = express.Router(); const questionbankController = new QuestionbankController(questionbankService); const logCategory = 'questionbank'; +function isUserMemberOfTeam(user, teamId) { + let { teams } = user; + return teams.filter(team => !isNull(team.publisher)).some(team => team.publisher._id.equals(teamId)); +} + const validateViewRequest = (req, res, next) => { - const { teamId } = req.params; - if (isUndefined(teamId)) return res.status(400).json({ success: false, message: 'You must provide a valid teamId' }); + const { publisherId } = req.params; + + if (isUndefined(publisherId)) return res.status(400).json({ success: false, message: 'You must provide a valid publisher Id' }); next(); }; -const authorizeView = (req, res, next) => {}; +const authorizeView = (req, res, next) => { + const requestingUser = req.user; + const { publisherId } = req.params; + + const authorised = isUserMemberOfTeam(requestingUser, publisherId); + + if (!authorised) { + return res.status(401).json({ + success: false, + message: 'You are not authorised to perform this action', + }); + } + + next(); +}; -// @route GET /api/v1/questionbanks/teamId -// @desc Returns a questionbank based on ID of the publisher provided +// @route GET /api/v1/questionbanks/publisherId +// @desc Returns questionbank info belonging to the publisher // @access Public router.get( - '/:teamId', + '/:publisherId', passport.authenticate('jwt'), validateViewRequest, authorizeView, diff --git a/src/resources/questionbank/questionbank.service.js b/src/resources/questionbank/questionbank.service.js index c39a0b0a..7f4a0e02 100644 --- a/src/resources/questionbank/questionbank.service.js +++ b/src/resources/questionbank/questionbank.service.js @@ -1,6 +1,11 @@ +import { isNull, isEmpty } from 'lodash'; +import { DataRequestSchemaModel } from '../datarequest/schema/datarequest.schemas.model'; + export default class QuestionbankService { - constructor(questionbankRepository) { + constructor(questionbankRepository, publisherService, globalService) { this.questionbankRepository = questionbankRepository; + this.publisherService = publisherService; + this.globalService = globalService; } getQuestionbank(id, query = {}, options = {}) { @@ -14,4 +19,136 @@ export default class QuestionbankService { getQuestionbanks(query = {}) { return this.questionbankRepository.getQuestionbanks(query); } + + async getQuestionBankInfo(publisherId) { + const publisher = await this.publisherService.getPublisher(publisherId); + const global = await this.globalService.getGlobal({ localeId: 'en-gb' }); + const masterSchema = global.masterSchema; + + let dataRequestSchemas = await DataRequestSchemaModel.find({ publisher: publisher.name }).sort({ version: -1 }); + + if (isEmpty(dataRequestSchemas)) { + let questionStatus = {}; + + masterSchema.questionSets.forEach(questionSet => { + questionSet.questions.forEach(question => { + questionStatus[question.questionId] = question.defaultQuestion; + }); + }); + + const newSchema = new DataRequestSchemaModel({ + publisher: publisher.name, + status: 'draft', + isCloneable: true, + questionStatus, + }); + + await DataRequestSchemaModel.create(newSchema); + + return { + masterSchema, + questionStatus: newSchema.questionStatus, + guidance: newSchema.guidance, + countOfChanges: newSchema.countOfChanges, + }; + } + + const latestSchemaVersion = dataRequestSchemas[0]; + if (latestSchemaVersion.status === 'draft') { + //check if new questions added in the masterSchema + let newQuestionStatus = latestSchemaVersion.questionStatus; + let newQuestionsAdded = false; + + masterSchema.questionSets.forEach(questionSet => { + questionSet.questions.forEach(question => { + if (!Object.keys(latestSchemaVersion.questionStatus).includes(question.questionId)) { + newQuestionStatus[question.questionId] = question.defaultQuestion; + newQuestionsAdded = true; + } + }); + }); + + if (newQuestionsAdded) + await DataRequestSchemaModel.findOneAndUpdate({ _id: latestSchemaVersion._id }, { $set: { questionStatus: newQuestionStatus } }); + + return { + masterSchema, + questionStatus: newQuestionStatus, + guidance: latestSchemaVersion.guidance, + countOfChanges: latestSchemaVersion.countOfChanges, + }; + } + + if (latestSchemaVersion.status === 'active') { + if (!isEmpty(latestSchemaVersion.questionStatus)) { + let newQuestionStatus = latestSchemaVersion.questionStatus; + + //check for new questions in the master schema and add those + masterSchema.questionSets.forEach(questionSet => { + questionSet.questions.forEach(question => { + if (!Object.keys(latestSchemaVersion.questionStatus).includes(question.questionId)) { + newQuestionStatus[question.questionId] = question.defaultQuestion; + } + }); + }); + + const newSchema = new DataRequestSchemaModel({ + publisher: publisher.name, + status: 'draft', + isCloneable: true, + questionStatus: newQuestionStatus, + guidance: latestSchemaVersion.guidance, + version: latestSchemaVersion.version + 1, + }); + + await DataRequestSchemaModel.create(newSchema); + + return { + masterSchema, + questionStatus: newSchema.questionStatus, + guidance: newSchema.guidance, + countOfChanges: newSchema.countOfChanges, + }; + } else { + //need to create the question status from the current jsonSchema + let questionStatus = {}; + const guidance = {}; + const jsonSchema = latestSchemaVersion.jsonSchema; + + let questionIds = []; + jsonSchema.questionSets.forEach(questionSet => { + questionIds = [...questionIds, ...questionSet.questions.map(question => question.questionId)]; + }); + + masterSchema.questionSets.forEach(questionSet => { + questionSet.questions.forEach(question => { + if (questionIds.includes(question.questionId)) { + questionStatus[question.questionId] = 1; + } else { + questionStatus[question.questionId] = question.defaultQuestion; + } + }); + }); + + const newSchema = new DataRequestSchemaModel({ + publisher: publisher.name, + status: 'draft', + isCloneable: true, + questionStatus, + guidance, + version: latestSchemaVersion.version + 1, + }); + + await DataRequestSchemaModel.create(newSchema); + + return { + masterSchema, + questionStatus, + guidance: {}, + countOfChanges: 0, + version: latestSchemaVersion.version + 1, + }; + } + } + } } From fd813204d84e712cd4ee2acc90afe70ce14de7bd Mon Sep 17 00:00:00 2001 From: massimocianfroccaPA Date: Wed, 24 Nov 2021 11:07:01 +0000 Subject: [PATCH 03/67] Add tests for question bank service --- .../datarequest/datarequest.repository.js | 15 +- src/resources/publisher/publisher.service.js | 2 +- .../questionbank/__mocks__/questionbank.js | 303 ++++++++++++++++++ .../__tests__/questionbank.service.test.js | 63 ++++ src/resources/questionbank/dependency.js | 3 +- .../questionbank/questionbank.service.js | 36 ++- 6 files changed, 402 insertions(+), 20 deletions(-) create mode 100644 src/resources/questionbank/__mocks__/questionbank.js create mode 100644 src/resources/questionbank/__tests__/questionbank.service.test.js diff --git a/src/resources/datarequest/datarequest.repository.js b/src/resources/datarequest/datarequest.repository.js index 97be596e..9a88fe78 100644 --- a/src/resources/datarequest/datarequest.repository.js +++ b/src/resources/datarequest/datarequest.repository.js @@ -106,7 +106,7 @@ export default class DataRequestRepository extends Repository { ]); } - getApplicationToSubmitById(id) { + getApplicationToSubmitById(id) { return DataRequestModel.findOne({ _id: id }).populate([ { path: 'datasets dataset initialDatasets', @@ -165,6 +165,19 @@ export default class DataRequestRepository extends Repository { }).sort({ createdAt: -1 }); } + getApplicationFormSchemas(publisher) { + return DataRequestSchemaModel.find({ publisher: publisher.name }).sort({ version: -1 }); + } + + createApplicationFormSchema(newSchema) { + const newSchemaModel = new DataRequestSchemaModel(newSchema); + DataRequestSchemaModel.create(newSchemaModel); + } + + updateApplicationFormSchemaById(id, data, options = {}) { + DataRequestSchemaModel.findByIdAndUpdate(id, data, { ...options }); + } + getDatasetsForApplicationByIds(datasetIds) { return ToolModel.find({ datasetid: { $in: datasetIds }, diff --git a/src/resources/publisher/publisher.service.js b/src/resources/publisher/publisher.service.js index f56f5a5c..c503938b 100644 --- a/src/resources/publisher/publisher.service.js +++ b/src/resources/publisher/publisher.service.js @@ -5,7 +5,7 @@ export default class PublisherService { this.publisherRepository = publisherRepository; } - getPublisher(id, options = {}) { + async getPublisher(id, options = {}) { return this.publisherRepository.getPublisher(id, options); } diff --git a/src/resources/questionbank/__mocks__/questionbank.js b/src/resources/questionbank/__mocks__/questionbank.js new file mode 100644 index 00000000..692754a8 --- /dev/null +++ b/src/resources/questionbank/__mocks__/questionbank.js @@ -0,0 +1,303 @@ +export const publisherStub = { + _id: '5f3f98068af2ef61552e1d75', + name: 'ALLIANCE > SAIL', + active: true, + imageURL: '', + allowsMessaging: true, + workflowEnabled: true, + allowAccessRequestManagement: true, + publisherDetails: { name: 'SAIL', memberOf: 'ALLIANCE' }, + uses5Safes: true, + mdcFolderId: 'c4f50de0-2188-426b-a6cd-6b11a8d6c3cb', +}; + +export const globalStub = { + masterSchema: { + questionSets: [ + { + questionSetId: 'primaryapplicant', + questionSetHeader: 'Primary applicant', + questions: [ + { + guidance: 'Please insert your full name.', + validations: [{ message: 'Please enter a value', type: 'isLength', params: [{ $numberDouble: '1.0' }] }], + questionId: 'safepeopleprimaryapplicantfullname', + input: { type: 'textInput', required: true }, + question: 'Full name', + lockedQuestion: 1, + defaultQuestion: 0, + }, + { + question: 'Job title', + questionId: 'safepeopleprimaryapplicantjobtitle', + validations: [{ params: [{ $numberDouble: '1.0' }], type: 'isLength', message: 'Please enter a value' }], + input: { required: true, type: 'textInput' }, + lockedQuestion: 1, + defaultQuestion: 1, + }, + { + questionId: 'safepeopleprimaryapplicanttelephone', + input: { type: 'textInput' }, + question: 'Telephone', + lockedQuestion: 1, + defaultQuestion: 0, + }, + { + question: 'ORCID', + input: { type: 'textInput' }, + questionId: 'safepeopleprimaryapplicantorcid', + guidance: + 'ORCID provides a persistent digital identifier (an ORCID iD) that you own and control, and that distinguishes you from every other researcher. You can create an ORCID profile at https://orcid.org/. If you have an ORCID iD please include it here. ', + lockedQuestion: 0, + defaultQuestion: 1, + }, + { + question: 'Email', + validations: [{ message: 'Please enter a value', type: 'isLength', params: [{ $numberDouble: '1.0' }] }, { type: 'isEmail' }], + input: { required: true, type: 'textInput' }, + questionId: 'safepeopleprimaryapplicantemail', + lockedQuestion: 1, + defaultQuestion: 0, + }, + ], + }, + { + questionSetHeader: 'Other individuals', + questionSetId: 'safepeople-otherindividuals', + questions: [ + { + question: 'Full name', + input: { type: 'textInput' }, + questionId: 'safepeopleotherindividualsfullname', + guidance: "Full name is the individual's first and last name", + lockedQuestion: 1, + defaultQuestion: 1, + }, + { + question: 'Job title', + input: { type: 'textInput' }, + questionId: 'safepeopleotherindividualsjobtitle', + guidance: 'Job Title is the name of the position the individual holds within their organisation.', + lockedQuestion: 1, + defaultQuestion: 0, + }, + { + question: 'Organisation', + questionId: 'safepeopleotherindividualsorganisation', + input: { type: 'textInput' }, + guidance: "Please include the individual's organisation.", + lockedQuestion: 1, + defaultQuestion: 0, + }, + { + input: { + type: 'checkboxOptionsInput', + label: 'Role', + options: [ + { value: 'Principal investigator', text: 'Principal investigator' }, + { text: 'Collaborator', value: 'Collaborator' }, + { value: 'Team member', text: 'Team member' }, + { + value: 'Other', + text: 'Other', + conditionalQuestions: [ + { + questionId: 'safepeopleotherindividualsroleotherdetails', + input: { type: 'textareaInput' }, + question: 'If other, please specify', + }, + ], + }, + ], + }, + questionId: 'safepeopleotherindividualsrole', + guidance: + 'A role is a function that the applicant plays. It might include role types and accreditation for those that are accessing the secure data and those that are not but would see cleared outputs from the project. \r\n (i.e. project lead, deputy lead, accrediter, researcher, peer reviewer)', + question: 'Role', + lockedQuestion: 1, + defaultQuestion: 0, + }, + { + question: 'Will this person access the data requested?', + questionId: 'safepeopleotherindividualsaccessdata', + input: { + options: [ + { value: 'Yes', text: 'Yes' }, + { text: 'No', value: 'No' }, + ], + label: 'Will this person access the data requested?', + type: 'radioOptionsInput', + }, + lockedQuestion: 1, + defaultQuestion: 1, + }, + { + questionId: 'safepeopleotherindividualsaccreditedresearcher', + input: { + options: [ + { + conditionalQuestions: [ + { + question: 'If yes, please provide details', + questionId: 'safepeopleotherindividualsaccreditedresearcherdetails', + input: { type: 'textareaInput' }, + }, + ], + value: 'Yes', + text: 'Yes', + }, + { value: 'No', text: 'No' }, + ], + type: 'radioOptionsInput', + label: 'Is this person an accredited researcher under the Digital Economy Act 2017?', + }, + question: 'Is this person an accredited researcher under the Digital Economy Act 2017?', + lockedQuestion: 1, + defaultQuestion: 0, + }, + { + input: { + label: 'Has this person undertaken professional training or education on the topic of Information Governance?', + type: 'radioOptionsInput', + options: [ + { + text: 'Yes', + value: 'Yes', + conditionalQuestions: [ + { + input: { type: 'textareaInput' }, + questionId: 'safepeopleotherindividualstraininginformationgovernancerecent', + question: 'Please provide full details regarding the most recent training', + }, + ], + }, + { + conditionalQuestions: [ + { + questionId: 'safepeopleotherindividualstraininginformationgovernanceintention', + input: { type: 'textareaInput' }, + question: 'Please provide any details of plans to attend training, if applicable', + }, + ], + value: 'No', + text: 'No', + }, + ], + }, + questionId: 'safepeopleotherindividualstraininginformationgovernance', + question: 'Has this person undertaken professional training or education on the topic of Information Governance?', + lockedQuestion: 1, + defaultQuestion: 0, + }, + { + question: "Please provide evidence of this person's expertise and experience relevant to delivering the project", + input: { type: 'textareaInput' }, + questionId: 'safepeopleotherindividualsexperience', + lockedQuestion: 1, + defaultQuestion: 1, + }, + ], + }, + ], + }, +}; + +export const questionStatusMissingEntriesStub = { + safepeopleprimaryapplicantfullname: 0, + safepeopleprimaryapplicantjobtitle: 1, + safepeopleprimaryapplicanttelephone: 0, + safepeopleprimaryapplicantorcid: 1, + safepeopleprimaryapplicantemail: 0, + safepeopleotherindividualsfullname: 1, + safepeopleotherindividualsjobtitle: 0, + safepeopleotherindividualsorganisation: 0, + safepeopleotherindividualsrole: 0, + safepeopleotherindividualsaccessdata: 1, + safepeopleotherindividualsaccreditedresearcher: 0, + safepeopleotherindividualstraininginformationgovernance: 0, + safepeopleotherindividualsexperience: 1, +}; + +export const dataRequestSchemaDraftStub = { + _id: { $oid: '619baf36eb175aaacd592bbb' }, + version: 1, + dataSetId: '', + publisher: 'ALLIANCE > SAIL', + formType: '5 safe', + countOfChanges: 1, + status: 'draft', + isCloneable: true, + guidance: { + safepeopleprimaryapplicantfullname: 'Guidance for safepeopleprimaryapplicantfullname', + safepeopleprimaryapplicantjobtitle: 'Guidance for safepeopleprimaryapplicantjobtitle', + safepeopleprimaryapplicanttelephone: 'Guidance for safepeopleprimaryapplicanttelephone', + }, + questionStatus: { + safepeopleprimaryapplicantfullname: 0, + safepeopleprimaryapplicantjobtitle: 1, + safepeopleprimaryapplicanttelephone: 0, + safepeopleprimaryapplicantorcid: 1, + safepeopleprimaryapplicantemail: 0, + safepeopleprimaryapplicantaccessdata: 0, + safepeopleprimaryapplicantaccreditedresearcher: 0, + safepeopleprimaryapplicanttraininginformationgovernance: 0, + safepeopleprimaryapplicantorganisationname: 0, + safepeopleprimaryapplicantorganisationdatasecurityprotectionkit: 0, + safepeopleprimaryapplicantorganisationdatacontroller: 0, + safepeopleotherindividualsfullname: 0, + safepeopleotherindividualsjobtitle: 0, + safepeopleotherindividualsorganisation: 0, + safepeopleotherindividualsrole: 0, + safepeopleotherindividualsaccessdata: 0, + safepeopleotherindividualsaccreditedresearcher: 0, + safepeopleotherindividualstraininginformationgovernance: 0, + safepeopleotherindividualsexperience: 0, + 'add-safepeople-otherindividuals': 0, + safeprojectaboutthisapplicationtype: 0, + safeprojectprojectdetailstitle: 0, + safeprojectprojectdetailstype: 0, + safeprojectprojectdetailsneworexisting: 0, + safeprojectprojectdetailslaysummary: 0, + 'safeproject-projectdetails-startdate': 0, + 'safeproject-projectdetails-enddate': 0, + safeprojectprojectdetailsaimsobjectivesrationale: 0, + safeprojectprojectdetailsdatausageforobjectives: 0, + safeprojectprojectdetailspublicbenefitimpact: 0, + safeprojectprojectdetailspublicpatientinvolvementengagement: 0, + safeprojectprojectdetailsindividualprivacyriskmitigation: 0, + safeprojectprojectdetailsgroupindividualdisavantageavoidance: 0, + safeprojectprojectdetailsresearchprojectsummarykeywords: 0, + safeprojectprojectdetailsresearchprojectfuturedatabasebenefit: 0, + safeprojectfunderinformationprojecthasfunder: 0, + safeprojectsponsorinformationprojecthassponsor: 0, + safeprojectdeclarationofinteresthascommercialinterest: 0, + safedatadatafieldsdatarequiredjustification: 0, + safedatadatafieldsfileuploaded: 0, + safedatadatafieldsinclusionexclusioncriteria: 0, + safedatadatafieldsdatarefreshrequired: 0, + safedataotherdatasetslinkadditionaldatasets: 0, + safedataotherdatasetsrisksmitigations: 0, + safedatalawfulbasisgdprarticle6basis: 0, + safedatalawfulbasisgdprarticle6basisjustification: 0, + safedatalawfulbasisgdprarticle9conditions: 0, + safedatalawfulbasisgdprarticle9basisjustification: 0, + safedataconfidentialityavenuelegalbasisconfidentialinformation: 0, + safedataethicsapprovalinsightresearch: 0, + safedataethicsapprovalapprovalobtained: 0, + safedatastorageandprocessingaccessmethod: 0, + safedatadataflowdatatransferedoutsideuk: 0, + safedatadataflowregionsdataprocessed: 0, + safedatadataflowdetailedinformation: 0, + safedatadataflowdiagramenclosed: 0, + safeoutputsoutputsdisseminationplansproposalfindings: 0, + safeoutputsoutputsdisseminationplansmilestones: 0, + safeoutputsoutputsdisseminationplansdisclosurecontrolpolicy: 0, + 'safeoutputs-dataretention-retaindatadate': 0, + safeoutputsdataretentionretaindatadatereason: 0, + safeoutputsdataretentionretaindataextensionpermissions: 0, + safeprojectintellectualpropertydevelopmentnewproductprocess: null, + }, + createdAt: { $date: { $numberLong: '1637592886679' } }, + updatedAt: { $date: { $numberLong: '1637601834397' } }, + __v: 0, +}; diff --git a/src/resources/questionbank/__tests__/questionbank.service.test.js b/src/resources/questionbank/__tests__/questionbank.service.test.js new file mode 100644 index 00000000..5785e6da --- /dev/null +++ b/src/resources/questionbank/__tests__/questionbank.service.test.js @@ -0,0 +1,63 @@ +import sinon from 'sinon'; +import DataRequestRepository from '../../datarequest/datarequest.repository'; +import QuestionBankService from '../questionbank.service'; +import GlobalService from '../../global/global.service'; +import { globalStub, publisherStub, questionStatusMissingEntriesStub, dataRequestSchemaDraftStub } from '../__mocks__/questionbank'; +import PublisherService from '../../publisher/publisher.service'; +import QuestionBankRepository from '../questionbank.repository'; +import PublisherRepository from '../../publisher/publisher.repository'; + +describe('Question Bank Service', function () { + it('When no entry exists in the schema', async function () { + //dataSchemaModel + const dataRequestRepository = new DataRequestRepository(); + const dataRequestRepositoryStub = sinon.stub(dataRequestRepository, 'getApplicationFormSchemas').returns([]); + const dataRequestRepositoryStub2 = sinon.stub(dataRequestRepository, 'createApplicationFormSchema'); + + const globalService = new GlobalService(); + const globalServiceStub = sinon.stub(globalService, 'getGlobal').returns(globalStub); + + const publisherRepository = new PublisherRepository(); + const publisherRepositoryStub = sinon.stub(publisherRepository, 'getPublisher').returns({}); + + const publisherService = new PublisherService(publisherRepository); + + const questionBankRepository = new QuestionBankRepository(); + + const questionBankService = new QuestionBankService(questionBankRepository, publisherService, globalService, dataRequestRepository); + + const result = await questionBankService.getQuestionBankInfo(publisherStub._id); + + //Il risultato + expect(result.questionStatus).toEqual(questionStatusMissingEntriesStub); + expect(result.guidance).toEqual({}); + expect(result.countOfChanges).toEqual(0); + expect(result.masterSchema).toEqual(globalStub.masterSchema); + }); + + it('When entry exists in draft status', async function () { + //dataSchemaModel + const dataRequestRepository = new DataRequestRepository(); + const dataRequestRepositoryStub = sinon.stub(dataRequestRepository, 'getApplicationFormSchemas').returns([dataRequestSchemaDraftStub]); + const dataRequestRepositoryStub2 = sinon.stub(dataRequestRepository, 'createApplicationFormSchema'); + + const globalService = new GlobalService(); + const globalServiceStub = sinon.stub(globalService, 'getGlobal').returns(globalStub); + + const publisherRepository = new PublisherRepository(); + const publisherRepositoryStub = sinon.stub(publisherRepository, 'getPublisher').returns({}); + + const publisherService = new PublisherService(publisherRepository); + + const questionBankRepository = new QuestionBankRepository(); + + const questionBankService = new QuestionBankService(questionBankRepository, publisherService, globalService, dataRequestRepository); + + const result = await questionBankService.getQuestionBankInfo(publisherStub._id); + + expect(result.questionStatus).toEqual(dataRequestSchemaDraftStub.questionStatus); + expect(result.guidance).toEqual(dataRequestSchemaDraftStub.guidance); + expect(result.countOfChanges).toEqual(dataRequestSchemaDraftStub.countOfChanges); + expect(result.masterSchema).toEqual(globalStub.masterSchema); + }); +}); diff --git a/src/resources/questionbank/dependency.js b/src/resources/questionbank/dependency.js index 49b21029..0a346e63 100644 --- a/src/resources/questionbank/dependency.js +++ b/src/resources/questionbank/dependency.js @@ -2,6 +2,7 @@ import QuestionbankRepository from './questionbank.repository'; import QuestionbankService from './questionbank.service'; import { publisherService } from '../publisher/dependency'; import { globalService } from '../global/dependency'; +import dataRequestRepository from '../datarequest/datarequest.repository'; export const questionbankRepository = new QuestionbankRepository(); -export const questionbankService = new QuestionbankService(questionbankRepository, publisherService, globalService); +export const questionbankService = new QuestionbankService(questionbankRepository, publisherService, globalService, dataRequestRepository); diff --git a/src/resources/questionbank/questionbank.service.js b/src/resources/questionbank/questionbank.service.js index 7f4a0e02..5fdaea67 100644 --- a/src/resources/questionbank/questionbank.service.js +++ b/src/resources/questionbank/questionbank.service.js @@ -1,11 +1,11 @@ -import { isNull, isEmpty } from 'lodash'; -import { DataRequestSchemaModel } from '../datarequest/schema/datarequest.schemas.model'; +import { isEmpty } from 'lodash'; export default class QuestionbankService { - constructor(questionbankRepository, publisherService, globalService) { + constructor(questionbankRepository, publisherService, globalService, dataRequestRepository) { this.questionbankRepository = questionbankRepository; this.publisherService = publisherService; this.globalService = globalService; + this.dataRequestRepository = dataRequestRepository; } getQuestionbank(id, query = {}, options = {}) { @@ -25,7 +25,7 @@ export default class QuestionbankService { const global = await this.globalService.getGlobal({ localeId: 'en-gb' }); const masterSchema = global.masterSchema; - let dataRequestSchemas = await DataRequestSchemaModel.find({ publisher: publisher.name }).sort({ version: -1 }); + let dataRequestSchemas = await this.dataRequestRepository.getApplicationFormSchemas(publisher); if (isEmpty(dataRequestSchemas)) { let questionStatus = {}; @@ -36,20 +36,22 @@ export default class QuestionbankService { }); }); - const newSchema = new DataRequestSchemaModel({ + const newSchema = { publisher: publisher.name, status: 'draft', isCloneable: true, questionStatus, - }); + guidance: {}, + countOfChanges: 0, + }; - await DataRequestSchemaModel.create(newSchema); + await this.dataRequestRepository.createApplicationFormSchema(newSchema); return { masterSchema, - questionStatus: newSchema.questionStatus, - guidance: newSchema.guidance, - countOfChanges: newSchema.countOfChanges, + questionStatus, + guidance: {}, + countOfChanges: 0, }; } @@ -69,7 +71,7 @@ export default class QuestionbankService { }); if (newQuestionsAdded) - await DataRequestSchemaModel.findOneAndUpdate({ _id: latestSchemaVersion._id }, { $set: { questionStatus: newQuestionStatus } }); + await this.dataRequestRepository.updateApplicationFormSchemaById(latestSchemaVersion._id, { questionStatus: newQuestionStatus }); return { masterSchema, @@ -92,16 +94,16 @@ export default class QuestionbankService { }); }); - const newSchema = new DataRequestSchemaModel({ + const newSchema = { publisher: publisher.name, status: 'draft', isCloneable: true, questionStatus: newQuestionStatus, guidance: latestSchemaVersion.guidance, version: latestSchemaVersion.version + 1, - }); + }; - await DataRequestSchemaModel.create(newSchema); + await this.dataRequestRepository.createApplicationFormSchema(newSchema); return { masterSchema, @@ -130,16 +132,16 @@ export default class QuestionbankService { }); }); - const newSchema = new DataRequestSchemaModel({ + const newSchema = { publisher: publisher.name, status: 'draft', isCloneable: true, questionStatus, guidance, version: latestSchemaVersion.version + 1, - }); + }; - await DataRequestSchemaModel.create(newSchema); + await this.dataRequestRepository.createApplicationFormSchema(newSchema); return { masterSchema, From 1b35841c1ac2193670c5b730e9419839fd392884 Mon Sep 17 00:00:00 2001 From: Richard Date: Wed, 24 Nov 2021 13:14:41 +0000 Subject: [PATCH 04/67] Added ability to update the data request modal content --- .../publisher/publisher.controller.js | 32 +++++++++++++++++++ src/resources/publisher/publisher.model.js | 4 +++ .../publisher/publisher.repository.js | 4 +++ src/resources/publisher/publisher.route.js | 4 +++ src/resources/publisher/publisher.service.js | 11 +++++++ 5 files changed, 55 insertions(+) diff --git a/src/resources/publisher/publisher.controller.js b/src/resources/publisher/publisher.controller.js index 1cb25865..b41cf6d2 100644 --- a/src/resources/publisher/publisher.controller.js +++ b/src/resources/publisher/publisher.controller.js @@ -4,6 +4,7 @@ import constants from '../utilities/constants.util'; import teamController from '../team/team.controller'; import Controller from '../base/controller'; import { logger } from '../utilities/logger'; +import { TeamModel } from '../team/team.model'; const logCategory = 'Publisher'; @@ -161,4 +162,35 @@ export default class PublisherController extends Controller { }); } } + + async updateDataRequestModalContent(req, res) { + try { + const { _id: requestingUserId } = req.user; + + const team = await TeamModel.findOne({ _id: req.params.id }) + .populate({ + path: 'users', + populate: { + path: 'additionalInfo', + select: 'organisation bio showOrganisation showBio', + }, + }) + .lean(); + + // Check that user is a manager + const authorised = teamController.checkTeamPermissions(constants.roleTypes.MANAGER, team, requestingUserId); + if (!authorised) { + return res.status(401).json({ success: false }); + } + + await this.publisherService.updateDataRequestModalContent(req.params.id, req.user.id, req.body.content).then(() => { + return res.status(200).json({ success: true }); + }); + } catch (err) { + return res.status(500).json({ + success: false, + message: 'An error occurred updating data request modal content', + }); + } + } } diff --git a/src/resources/publisher/publisher.model.js b/src/resources/publisher/publisher.model.js index 65740c96..20ff7fd5 100644 --- a/src/resources/publisher/publisher.model.js +++ b/src/resources/publisher/publisher.model.js @@ -21,6 +21,10 @@ const PublisherSchema = new Schema( body: String, footer: String, }, + dataRequestModalContentUpdatedOn: Date, + dataRequestModalContentUpdatedBy: Number, + applicationFormUpdatedOn: Date, + applicationFormUpdatedBy: Number, workflowEnabled: { type: Boolean, default: false, diff --git a/src/resources/publisher/publisher.repository.js b/src/resources/publisher/publisher.repository.js index ffdb8bfc..88c33a13 100644 --- a/src/resources/publisher/publisher.repository.js +++ b/src/resources/publisher/publisher.repository.js @@ -62,4 +62,8 @@ export default class PublisherRepository extends Repository { ]) .lean(); } + + async updatePublisher(query, options) { + return this.updateByQuery(query, options); + } } diff --git a/src/resources/publisher/publisher.route.js b/src/resources/publisher/publisher.route.js index e8a1e392..6817ef48 100644 --- a/src/resources/publisher/publisher.route.js +++ b/src/resources/publisher/publisher.route.js @@ -54,4 +54,8 @@ router.get( (req, res) => publisherController.getPublisherWorkflows(req, res) ); +router.patch('/dataRequestModalContent/:id', passport.authenticate('jwt'), (req, res) => + publisherController.updateDataRequestModalContent(req, res) +); + module.exports = router; diff --git a/src/resources/publisher/publisher.service.js b/src/resources/publisher/publisher.service.js index f56f5a5c..60b06de1 100644 --- a/src/resources/publisher/publisher.service.js +++ b/src/resources/publisher/publisher.service.js @@ -94,4 +94,15 @@ export default class PublisherService { return filteredApplications; } + + async updateDataRequestModalContent(publisherId, requestingUserId, content) { + await this.publisherRepository.updatePublisher( + { _id: publisherId }, + { + dataRequestModalContentUpdatedOn: Date.now(), + dataRequestModalContentUpdatedBy: requestingUserId, + dataRequestModalContent: { header: '', body: content, footer: '' }, + } + ); + } } From 11d602cd41be7822a6b6adc5e65c6e57f07fabda Mon Sep 17 00:00:00 2001 From: massimocianfroccaPA Date: Wed, 24 Nov 2021 14:03:15 +0000 Subject: [PATCH 05/67] Fix dependency bug and data request repository --- src/resources/datarequest/datarequest.repository.js | 2 +- src/resources/questionbank/dependency.js | 3 ++- src/resources/questionbank/masterSchema.json | 4 +++- src/resources/questionbank/questionbank.service.js | 1 + 4 files changed, 7 insertions(+), 3 deletions(-) diff --git a/src/resources/datarequest/datarequest.repository.js b/src/resources/datarequest/datarequest.repository.js index 9a88fe78..0d870c91 100644 --- a/src/resources/datarequest/datarequest.repository.js +++ b/src/resources/datarequest/datarequest.repository.js @@ -175,7 +175,7 @@ export default class DataRequestRepository extends Repository { } updateApplicationFormSchemaById(id, data, options = {}) { - DataRequestSchemaModel.findByIdAndUpdate(id, data, { ...options }); + return DataRequestSchemaModel.findByIdAndUpdate(id, data, { ...options }); } getDatasetsForApplicationByIds(datasetIds) { diff --git a/src/resources/questionbank/dependency.js b/src/resources/questionbank/dependency.js index 0a346e63..67d88ac3 100644 --- a/src/resources/questionbank/dependency.js +++ b/src/resources/questionbank/dependency.js @@ -2,7 +2,8 @@ import QuestionbankRepository from './questionbank.repository'; import QuestionbankService from './questionbank.service'; import { publisherService } from '../publisher/dependency'; import { globalService } from '../global/dependency'; -import dataRequestRepository from '../datarequest/datarequest.repository'; +import DataRequestRepository from '../datarequest/datarequest.repository'; export const questionbankRepository = new QuestionbankRepository(); +export const dataRequestRepository = new DataRequestRepository(); export const questionbankService = new QuestionbankService(questionbankRepository, publisherService, globalService, dataRequestRepository); diff --git a/src/resources/questionbank/masterSchema.json b/src/resources/questionbank/masterSchema.json index f637b004..0e09f4f2 100644 --- a/src/resources/questionbank/masterSchema.json +++ b/src/resources/questionbank/masterSchema.json @@ -1551,7 +1551,9 @@ { "input": { "type": "textareaInput" }, "questionId": "safeprojectintellectualpropertydevelopmentnewproductprocess", - "question": "Please indicate if the research could lead to the development of a new product/process or the generation of intellectual property." + "question": "Please indicate if the research could lead to the development of a new product/process or the generation of intellectual property.", + "lockedQuestion": 1, + "defaultQuestion": 0 } ] }, diff --git a/src/resources/questionbank/questionbank.service.js b/src/resources/questionbank/questionbank.service.js index 5fdaea67..7f031669 100644 --- a/src/resources/questionbank/questionbank.service.js +++ b/src/resources/questionbank/questionbank.service.js @@ -101,6 +101,7 @@ export default class QuestionbankService { questionStatus: newQuestionStatus, guidance: latestSchemaVersion.guidance, version: latestSchemaVersion.version + 1, + countOfChanges: 0, }; await this.dataRequestRepository.createApplicationFormSchema(newSchema); From 9f9c561d523d8a0e5b0b85ff0f2b6c3eac0b2c9f Mon Sep 17 00:00:00 2001 From: massimocianfroccaPA Date: Wed, 24 Nov 2021 17:03:34 +0000 Subject: [PATCH 06/67] Add test data --- .../activeSchemaCreatedThroughForm.js | 56 +++ .../activeSchemaNotCreatedThroughForm.js | 331 ++++++++++++++++++ .../draftSchemaCreatedThroughForm.js | 83 +++++ .../questionbank/__mocks__/noSchemaExists.js | 18 + .../questionbank/__mocks__/questionbank.js | 104 +----- .../__tests__/questionbank.service.test.js | 94 ++--- .../questionbank/questionbank.service.js | 13 +- 7 files changed, 551 insertions(+), 148 deletions(-) create mode 100644 src/resources/questionbank/__mocks__/activeSchemaCreatedThroughForm.js create mode 100644 src/resources/questionbank/__mocks__/activeSchemaNotCreatedThroughForm.js create mode 100644 src/resources/questionbank/__mocks__/draftSchemaCreatedThroughForm.js create mode 100644 src/resources/questionbank/__mocks__/noSchemaExists.js diff --git a/src/resources/questionbank/__mocks__/activeSchemaCreatedThroughForm.js b/src/resources/questionbank/__mocks__/activeSchemaCreatedThroughForm.js new file mode 100644 index 00000000..f5e53dda --- /dev/null +++ b/src/resources/questionbank/__mocks__/activeSchemaCreatedThroughForm.js @@ -0,0 +1,56 @@ +export const dataRequestSchema = { + _id: { $oid: '619e3176135ebd6de948f3dc' }, + version: { $numberInt: '3' }, + dataSetId: '', + publisher: 'ALLIANCE > SAIL', + formType: '5 safe', + countOfChanges: 0, + status: 'active', + isCloneable: true, + questionStatus: { + safedatadataflowdiagramenclosed: 1, + safeoutputsoutputsdisseminationplansproposalfindings: 0, + safeoutputsoutputsdisseminationplansmilestones: 0, + safeoutputsoutputsdisseminationplansdisclosurecontrolpolicy: 0, + 'safeoutputs-dataretention-retaindatadate': 0, + safeoutputsdataretentionretaindatadatereason: 1, + safeoutputsdataretentionretaindataextensionpermissions: 0, + }, + createdAt: { $date: { $numberLong: '1637757303647' } }, + updatedAt: { $date: { $numberLong: '1637757380701' } }, + __v: 0, + guidance: { + safedatadataflowdiagramenclosed: 'This is the guidance for safedatadataflowdiagramenclosed', + 'safeoutputs-dataretention-retaindatadate': 'This is the guidance for safeoutputs-dataretention-retaindatadate', + }, +}; + +export const expectedQuestionStatus = { + safedatadataflowdiagramenclosed: 1, + safeoutputsoutputsdisseminationplansproposalfindings: 0, + safeoutputsoutputsdisseminationplansmilestones: 0, + safeoutputsoutputsdisseminationplansdisclosurecontrolpolicy: 0, + 'safeoutputs-dataretention-retaindatadate': 0, + safeoutputsdataretentionretaindatadatereason: 1, + safeoutputsdataretentionretaindataextensionpermissions: 0, + safepeopleprimaryapplicantfullname: 0, + safepeopleprimaryapplicantjobtitle: 1, + safepeopleprimaryapplicanttelephone: 0, + safepeopleprimaryapplicantorcid: 1, + safepeopleprimaryapplicantemail: 0, + safepeopleotherindividualsfullname: 1, + safepeopleotherindividualsjobtitle: 0, + safepeopleotherindividualsorganisation: 0, + safepeopleotherindividualsrole: 0, + safepeopleotherindividualsaccessdata: 1, + safepeopleotherindividualsaccreditedresearcher: 0, + safepeopleotherindividualstraininginformationgovernance: 0, + safepeopleotherindividualsexperience: 1, +}; + +export const expectedGuidance = { + safedatadataflowdiagramenclosed: 'This is the guidance for safedatadataflowdiagramenclosed', + 'safeoutputs-dataretention-retaindatadate': 'This is the guidance for safeoutputs-dataretention-retaindatadate', +}; + +export const expectedCountOfChanges = 0; diff --git a/src/resources/questionbank/__mocks__/activeSchemaNotCreatedThroughForm.js b/src/resources/questionbank/__mocks__/activeSchemaNotCreatedThroughForm.js new file mode 100644 index 00000000..ceac4331 --- /dev/null +++ b/src/resources/questionbank/__mocks__/activeSchemaNotCreatedThroughForm.js @@ -0,0 +1,331 @@ +export const dataRequestSchema = { + _id: { $oid: '5fbabae775c2095bdbdc1533' }, + version: { $numberInt: '2' }, + publisher: 'ALLIANCE > SAIL', + id: { $numberLong: '45651390300502031' }, + status: 'active', + jsonSchema: { + pages: [ + { + description: + 'Who is going to be accessing the data?\n\nSafe People should have the right motivations for accessing research data and understand the legal and ethical considerations when using data that may be sensitive or confidential. Safe People should also have sufficient skills, knowledge and experience to work with the data effectively. Researchers may need to undergo specific training or accreditation before accessing certain data or research environments and demonstrate that they are part of a bona fide research organisation.\n\nThe purpose of this section is to ensure that:\n- details of people who will be accessing the data and the people who are responsible for completing the application are identified\n- any individual or organisation that intends to access the data requested is identified\n- all identified individuals have the necessary accreditation and/or expertise to work with the data effectively.', + title: 'Safe people', + active: true, + pageId: 'safepeople', + }, + { description: 'Description', title: 'Safe project', active: false, pageId: 'safeproject' }, + { description: 'Description', title: 'Safe data', active: false, pageId: 'safedata' }, + { pageId: 'safesettings', active: false, title: 'Safe settings', description: 'Description' }, + { title: 'Safe outputs', description: 'Description', pageId: 'safeoutputs', active: false }, + ], + formPanels: [ + { panelId: 'primaryapplicant', index: { $numberDouble: '1.0' }, pageId: 'safepeople' }, + { index: { $numberDouble: '2.0' }, pageId: 'safepeople', panelId: 'safepeople-otherindividuals' }, + { index: { $numberDouble: '3.0' }, pageId: 'safeproject', panelId: 'safeproject-aboutthisapplication' }, + { index: { $numberDouble: '4.0' }, pageId: 'safeproject', panelId: 'safeproject-projectdetails' }, + { panelId: 'safeproject-funderinformation', index: { $numberDouble: '5.0' }, pageId: 'safeproject' }, + { index: { $numberDouble: '6.0' }, pageId: 'safeproject', panelId: 'safeproject-sponsorinformation' }, + { pageId: 'safeproject', index: { $numberDouble: '7.0' }, panelId: 'safeproject-declarationofinterest' }, + { index: { $numberDouble: '8.0' }, pageId: 'safeproject', panelId: 'safeproject-intellectualproperty' }, + { panelId: 'safedata-datafields', pageId: 'safedata', index: { $numberDouble: '9.0' } }, + { index: { $numberDouble: '10.0' }, pageId: 'safedata', panelId: 'safedata-otherdatasetsintentiontolinkdata' }, + { panelId: 'safedata-lawfulbasis', pageId: 'safedata', index: { $numberDouble: '11.0' } }, + { panelId: 'safedata-confidentialityavenue', pageId: 'safedata', index: { $numberDouble: '12.0' } }, + { pageId: 'safedata', index: { $numberDouble: '13.0' }, panelId: 'safedata-ethicalapproval' }, + { index: { $numberDouble: '14.0' }, pageId: 'safesettings', panelId: 'safesettings-storageandprocessing' }, + { pageId: 'safesettings', index: { $numberDouble: '15.0' }, panelId: 'safesettings-dataflow' }, + { panelId: 'safeoutputs-outputsdisseminationplans', index: { $numberDouble: '16.0' }, pageId: 'safeoutputs' }, + { pageId: 'safeoutputs', index: { $numberDouble: '17.0' }, panelId: 'safeoutputs-retention' }, + ], + questionPanels: [ + { + questionSets: [{ questionSetId: 'primaryapplicant', index: { $numberDouble: '1.0' } }], + pageId: 'safepeople', + questionPanelHeaderText: 'TODO: We need a description for this panel', + panelHeader: + "Please list the individuals who will have access to the data requested, or are responsible for helping complete this application form. \n\nThis section should include key contact details for the person who is leading the project; key contact details for the person(s) who (are) leading the project from other organisations. Only one contact from each organisation is needed. \n\nThe 'Primary applicant' is the person filling out the application form and principal contact for the application. This is usually the person with operational responsibility for the proposal. Each application must have details for at least one person.\n\nPlease use the file upload function if you're not able to add all individuals via the form.", + panelId: 'primaryapplicant', + navHeader: 'Primary applicant', + }, + { + questionSets: [ + { index: { $numberDouble: '1.0' }, questionSetId: 'safepeople-otherindividuals' }, + { index: { $numberDouble: '100.0' }, questionSetId: 'add-safepeople-otherindividuals' }, + ], + pageId: 'safepeople', + questionPanelHeaderText: 'TODO: We need a description for this panel', + panelHeader: + "Please list the individuals who will have access to the data requested, or are responsible for helping complete this application form. \n\nThis section should include key contact details for the person who is leading the project; key contact details for the person(s) who (are) leading the project from other organisations. Only one contact from each organisation is needed. \n\nThe 'Primary applicant' is the person filling out the application form and principal contact for the application. This is usually the person with operational responsibility for the proposal. Each application must have details for at least one person.\n\nPlease use the file upload function if you're not able to add all individuals via the form.", + panelId: 'safepeople-otherindividuals', + navHeader: 'Other individuals', + }, + { + navHeader: 'About this application', + panelHeader: '', + panelId: 'safeproject-aboutthisapplication', + questionPanelHeaderText: 'TODO: We need a description for this panel', + questionSets: [{ questionSetId: 'safeproject-aboutthisapplication', index: { $numberDouble: '1.0' } }], + pageId: 'safeproject', + }, + { + questionPanelHeaderText: 'TODO: We need a description for this panel', + pageId: 'safeproject', + questionSets: [{ index: { $numberDouble: '1.0' }, questionSetId: 'safeproject-projectdetails' }], + navHeader: 'Project details', + panelId: 'safeproject-projectdetails', + panelHeader: '', + }, + { + navHeader: 'Funder information', + panelHeader: + "A funder is the organisation or body providing the financial resource to make the project possible, and may be different to the organisation detailed in the Safe people section. Please provide details of the main funder organisations supporting this project.\n\nPlease use the file upload function if you're not able to add all funders via the form.", + panelId: 'safeproject-funderinformation', + questionPanelHeaderText: 'TODO: We need a description for this panel', + questionSets: [{ questionSetId: 'safeproject-funderinformation', index: { $numberDouble: '1.0' } }], + pageId: 'safeproject', + }, + { + navHeader: 'Sponsor information', + panelId: 'safeproject-sponsorinformation', + panelHeader: "Please use the file upload function if you're not able to add all sponsors via the form.", + questionPanelHeaderText: 'TODO: We need a description for this panel', + pageId: 'safeproject', + questionSets: [{ index: { $numberDouble: '1.0' }, questionSetId: 'safeproject-sponsorinformation' }], + }, + { + navHeader: 'Declaration of interest', + panelHeader: '', + panelId: 'safeproject-declarationofinterest', + questionPanelHeaderText: 'TODO: We need a description for this panel', + questionSets: [{ questionSetId: 'safeproject-declarationofinterest', index: { $numberDouble: '1.0' } }], + pageId: 'safeproject', + }, + { + questionPanelHeaderText: 'TODO: We need a description for this panel', + pageId: 'safeproject', + questionSets: [{ index: { $numberDouble: '1.0' }, questionSetId: 'safeproject-intellectualproperty' }], + navHeader: 'Intellectual property', + panelId: 'safeproject-intellectualproperty', + panelHeader: '', + }, + { + questionPanelHeaderText: 'TODO: We need a description for this panel', + questionSets: [{ questionSetId: 'safedata-datafields', index: { $numberDouble: '1.0' } }], + pageId: 'safedata', + navHeader: 'Data fields', + panelHeader: '', + panelId: 'safedata-datafields', + }, + { + navHeader: 'Other datasets - Intention to link data', + panelId: 'safedata-otherdatasetsintentiontolinkdata', + panelHeader: '', + questionPanelHeaderText: 'TODO: We need a description for this panel', + pageId: 'safedata', + questionSets: [{ questionSetId: 'safedata-otherdatasetsintentiontolinkdata', index: { $numberDouble: '1.0' } }], + }, + { + navHeader: 'Lawful basis', + panelId: 'safedata-lawfulbasis', + panelHeader: '', + questionPanelHeaderText: 'TODO: We need a description for this panel', + pageId: 'safedata', + questionSets: [{ index: { $numberDouble: '1.0' }, questionSetId: 'safedata-lawfulbasis' }], + }, + { + navHeader: 'Confidentiality avenue', + panelId: 'safedata-confidentialityavenue', + panelHeader: '', + questionPanelHeaderText: 'TODO: We need a description for this panel', + pageId: 'safedata', + questionSets: [{ index: { $numberDouble: '1.0' }, questionSetId: 'safedata-confidentialityavenue' }], + }, + { + navHeader: 'Ethical approval', + panelId: 'safedata-ethicalapproval', + panelHeader: + 'This section details the research and ethics approval which you have obtained or sought for your project, or otherwise provides evidence as to why such approval is not necessary. For instance, for data analysis done on data deemed anonymous, no ethical approval is explicitly needed for said analyses. \n\nWhere such approval is not in place, it is important that you demonstrate why this is the case and provide assurances if approval is pending. If you need advice on whether ethics approval is necessary, you should approach your local ethics services in the first instance. Information about UK research ethics committees and ethical opinions can be found on the Health Research Authority (HRA) website.', + questionPanelHeaderText: 'TODO: We need a description for this panel', + pageId: 'safedata', + questionSets: [{ questionSetId: 'safedata-ethicalapproval', index: { $numberDouble: '1.0' } }], + }, + { + panelHeader: + "This section details in what way the proposal aims to store and use data, and controls in place to minimise risks associated with this storage and use. If you have indicated that your proposal seeks to store and use data exclusively through a recognised trusted research environment, then you do not need to complete this section.\n In relation to personal data, means any operation or set of operations which is performed on personal data or on sets of personal data (whether or not by automated means, such as collection, recording, organisation, structuring, storage, alteration, retrieval, consultation, use, disclosure, dissemination, restriction, erasure or destruction).\n \n All Locations where processing will be undertaken, for the avoidance of doubt storage is considered processing. For each separate organisation processing data which is not fully anonymous a separate partner organisation form must also be completed.\n \n Processing, in relation to information or data means obtaining, recording or holding the information or data or carrying out any operation or set of operations on the information or data, including—\n a) organisation, adaptation or alteration of the information or data,\n b) retrieval, consultation or use of the information or data,\n c) disclosure of the information or data by transmission,\n dissemination or otherwise making available, or\n d) alignment, combination, blocking, erasure or destruction of the information or data.\n\nPlease note that where an applicant has explicit consent from participants (such as in cohort studies) to hold linked health records, and therefore request extraction of data held by SAIL back to their own research setting, rather than be accessed solely in the remote desktop environment SAIL providers, a user may apply in these circumstances to SAIL for such extraction, with justification provided through the means of their consent documentation and ethical approval to hold such data outside of our secure setting.\n\nPlease use the file upload function if you're not able to add all organisations via the form.", + panelId: 'safesettings-storageandprocessing', + navHeader: 'Storage and processing', + questionSets: [{ questionSetId: 'safesettings-storageandprocessing', index: { $numberDouble: '1.0' } }], + pageId: 'safesettings', + questionPanelHeaderText: 'TODO: We need a description for this panel', + }, + { + navHeader: 'Dataflow', + panelHeader: '', + panelId: 'safesettings-dataflow', + questionPanelHeaderText: 'TODO: We need a description for this panel', + questionSets: [{ index: { $numberDouble: '1.0' }, questionSetId: 'safesettings-dataflow' }], + pageId: 'safesettings', + }, + { + panelHeader: '', + panelId: 'safeoutputs-outputsdisseminationplans', + navHeader: 'Outputs dissemination plans', + questionSets: [{ questionSetId: 'safeoutputs-outputsdisseminationplans', index: { $numberDouble: '1.0' } }], + pageId: 'safeoutputs', + questionPanelHeaderText: 'TODO: We need a description for this panel', + }, + { + questionPanelHeaderText: 'TODO: We need a description for this panel', + questionSets: [{ questionSetId: 'safeoutputs-retention', index: { $numberDouble: '1.0' } }], + pageId: 'safeoutputs', + navHeader: 'Retention', + panelHeader: '', + panelId: 'safeoutputs-retention', + }, + ], + questionSets: [ + { + questionSetId: 'safesettings-dataflow', + questionSetHeader: 'Dataflow', + questions: [ + { + validations: [{ message: 'Please select an option', type: 'isLength', params: [{ $numberDouble: '1.0' }] }], + question: 'Will the data be transferred outside of the United Kingdom?', + questionId: 'safedatadataflowdatatransferedoutsideuk', + input: { + options: [ + { + text: 'Yes', + conditionalQuestions: [ + { + input: { type: 'textareaInput' }, + questionId: 'safedatadataflowdatatransferedoutsideukdetails', + question: 'If yes, please provide more details', + }, + ], + value: 'Yes', + }, + { text: 'No', value: 'No' }, + ], + type: 'radioOptionsInput', + required: true, + label: 'Will the data be transferred outside of the United Kingdom?', + }, + }, + { + input: { + options: [ + { text: 'England/Wales', value: 'England/Wales' }, + { value: 'United Kingdom', text: 'United Kingdom' }, + { value: 'European Economic Area', text: 'European Economic Area' }, + { text: 'Other', value: 'Other' }, + ], + type: 'checkboxOptionsInput', + label: 'Please specify the regions where data will be processed.', + }, + question: 'Please specify the regions where data will be processed.', + questionId: 'safedatadataflowregionsdataprocessed', + }, + { + question: 'Please provide detailed information on data flows', + questionId: 'safedatadataflowdetailedinformation', + input: { type: 'textareaInput' }, + }, + { + question: 'Please include a data flow diagram for the requested data and any additional datasets intended to be linked.', + questionId: 'safedatadataflowdiagramenclosed', + input: { + label: 'Please include a data flow diagram for the requested data and any additional datasets intended to be linked.', + options: [{ text: 'I have enclosed a copy of the dataflow', value: 'I have enclosed a copy of the dataflow' }], + type: 'checkboxOptionsInput', + }, + }, + ], + }, + { + questionSetHeader: 'Outputs dissemination plans', + questionSetId: 'safeoutputs-outputsdisseminationplans', + questions: [ + { + validations: [{ params: [{ $numberDouble: '1.0' }], message: 'Please enter a value', type: 'isLength' }], + question: 'How will proposal findings be disseminated, to what audience and in what format?', + questionId: 'safeoutputsoutputsdisseminationplansproposalfindings', + input: { required: true, type: 'textareaInput' }, + }, + { + question: 'Please include any milestones for outputs dissemination.', + questionId: 'safeoutputsoutputsdisseminationplansmilestones', + input: { type: 'textareaInput', required: true }, + validations: [{ type: 'isLength', message: 'Please enter a value', params: [{ $numberDouble: '1.0' }] }], + }, + { + questionId: 'safeoutputsoutputsdisseminationplansdisclosurecontrolpolicy', + question: + 'What steps will be taken to ensure that individuals cannot be identified? Please describe what disclosure control policy will be applied.', + input: { type: 'textareaInput', required: true }, + validations: [{ params: [{ $numberDouble: '1.0' }], message: 'Please enter a value', type: 'isLength' }], + }, + ], + }, + { + questions: [ + { + validations: [{ params: [{ $numberDouble: '1.0' }], type: 'isLength', message: 'Please enter a value' }], + input: { required: true, type: 'datePickerCustom' }, + questionId: 'safeoutputs-dataretention-retaindatadate', + question: 'Please state the date until which you will retain the data', + }, + { + questionId: 'safeoutputsdataretentionretaindatadatereason', + question: 'Please indicate the reason for this date', + input: { type: 'textareaInput' }, + }, + { + questionId: 'safeoutputsdataretentionretaindataextensionpermissions', + question: + 'Please provide details of any permissions that will need to apply for an extension to during this period in order to retain a legal basis to hold the data (e.g. section 251)', + input: { type: 'textareaInput' }, + }, + ], + questionSetId: 'safeoutputs-retention', + questionSetHeader: 'Retention', + }, + ], + }, + createdAt: { $date: { $numberLong: '1606034106629' } }, + updatedAt: { $date: { $numberLong: '1616431822002' } }, + __v: { $numberInt: '0' }, + formType: '5 safe', + dataSetId: '', + isCloneable: true, +}; + +//Combination of the questions in the active schema and the questions in the master schema +export const expectedQuestionStatus = { + safedatadataflowdatatransferedoutsideuk: 1, + safedatadataflowregionsdataprocessed: 1, + safedatadataflowdetailedinformation: 1, + safedatadataflowdiagramenclosed: 1, + safeoutputsoutputsdisseminationplansproposalfindings: 1, + safeoutputsoutputsdisseminationplansmilestones: 1, + safeoutputsoutputsdisseminationplansdisclosurecontrolpolicy: 1, + 'safeoutputs-dataretention-retaindatadate': 1, + safeoutputsdataretentionretaindatadatereason: 1, + safeoutputsdataretentionretaindataextensionpermissions: 1, + safepeopleprimaryapplicantfullname: 0, + safepeopleprimaryapplicantjobtitle: 1, + safepeopleprimaryapplicanttelephone: 0, + safepeopleprimaryapplicantorcid: 1, + safepeopleprimaryapplicantemail: 0, + safepeopleotherindividualsfullname: 1, + safepeopleotherindividualsjobtitle: 0, + safepeopleotherindividualsorganisation: 0, + safepeopleotherindividualsrole: 0, + safepeopleotherindividualsaccessdata: 1, + safepeopleotherindividualsaccreditedresearcher: 0, + safepeopleotherindividualstraininginformationgovernance: 0, + safepeopleotherindividualsexperience: 1, +}; + +export const expectedGuidance = {}; +export const expectedCountOfChanges = 0; diff --git a/src/resources/questionbank/__mocks__/draftSchemaCreatedThroughForm.js b/src/resources/questionbank/__mocks__/draftSchemaCreatedThroughForm.js new file mode 100644 index 00000000..d45f25d5 --- /dev/null +++ b/src/resources/questionbank/__mocks__/draftSchemaCreatedThroughForm.js @@ -0,0 +1,83 @@ +export const dataRequestSchema = { + _id: { $oid: '619baf36eb175aaacd592bbb' }, + version: 1, + dataSetId: '', + publisher: 'ALLIANCE > SAIL', + formType: '5 safe', + countOfChanges: 1, + status: 'draft', + isCloneable: true, + guidance: { + safepeopleprimaryapplicantfullname: 'Guidance for safepeopleprimaryapplicantfullname', + safepeopleprimaryapplicantjobtitle: 'Guidance for safepeopleprimaryapplicantjobtitle', + safepeopleprimaryapplicanttelephone: 'Guidance for safepeopleprimaryapplicanttelephone', + }, + questionStatus: { + safepeopleprimaryapplicantfullname: 0, + safepeopleprimaryapplicantjobtitle: 1, + safepeopleprimaryapplicanttelephone: 0, + safepeopleprimaryapplicantorcid: 1, + safepeopleprimaryapplicantemail: 0, + safepeopleprimaryapplicantaccessdata: 0, + safepeopleprimaryapplicantaccreditedresearcher: 0, + safepeopleprimaryapplicanttraininginformationgovernance: 0, + safepeopleprimaryapplicantorganisationname: 0, + safepeopleprimaryapplicantorganisationdatasecurityprotectionkit: 0, + safepeopleprimaryapplicantorganisationdatacontroller: 0, + safepeopleotherindividualsfullname: 0, + safepeopleotherindividualsjobtitle: 0, + safepeopleotherindividualsorganisation: 0, + safepeopleotherindividualsrole: 0, + safepeopleotherindividualsaccessdata: 0, + safepeopleotherindividualsaccreditedresearcher: 0, + safepeopleotherindividualstraininginformationgovernance: 0, + safepeopleotherindividualsexperience: 0, + 'add-safepeople-otherindividuals': 0, + safeprojectaboutthisapplicationtype: 0, + safeprojectprojectdetailstitle: 0, + safeprojectprojectdetailstype: 0, + safeprojectprojectdetailsneworexisting: 0, + safeprojectprojectdetailslaysummary: 0, + 'safeproject-projectdetails-startdate': 0, + 'safeproject-projectdetails-enddate': 0, + safeprojectprojectdetailsaimsobjectivesrationale: 0, + safeprojectprojectdetailsdatausageforobjectives: 0, + safeprojectprojectdetailspublicbenefitimpact: 0, + safeprojectprojectdetailspublicpatientinvolvementengagement: 0, + safeprojectprojectdetailsindividualprivacyriskmitigation: 0, + safeprojectprojectdetailsgroupindividualdisavantageavoidance: 0, + safeprojectprojectdetailsresearchprojectsummarykeywords: 0, + safeprojectprojectdetailsresearchprojectfuturedatabasebenefit: 0, + safeprojectfunderinformationprojecthasfunder: 0, + safeprojectsponsorinformationprojecthassponsor: 0, + safeprojectdeclarationofinteresthascommercialinterest: 0, + safedatadatafieldsdatarequiredjustification: 0, + safedatadatafieldsfileuploaded: 0, + safedatadatafieldsinclusionexclusioncriteria: 0, + safedatadatafieldsdatarefreshrequired: 0, + safedataotherdatasetslinkadditionaldatasets: 0, + safedataotherdatasetsrisksmitigations: 0, + safedatalawfulbasisgdprarticle6basis: 0, + safedatalawfulbasisgdprarticle6basisjustification: 0, + safedatalawfulbasisgdprarticle9conditions: 0, + safedatalawfulbasisgdprarticle9basisjustification: 0, + safedataconfidentialityavenuelegalbasisconfidentialinformation: 0, + safedataethicsapprovalinsightresearch: 0, + safedataethicsapprovalapprovalobtained: 0, + safedatastorageandprocessingaccessmethod: 0, + safedatadataflowdatatransferedoutsideuk: 0, + safedatadataflowregionsdataprocessed: 0, + safedatadataflowdetailedinformation: 0, + safedatadataflowdiagramenclosed: 0, + safeoutputsoutputsdisseminationplansproposalfindings: 0, + safeoutputsoutputsdisseminationplansmilestones: 0, + safeoutputsoutputsdisseminationplansdisclosurecontrolpolicy: 0, + 'safeoutputs-dataretention-retaindatadate': 0, + safeoutputsdataretentionretaindatadatereason: 0, + safeoutputsdataretentionretaindataextensionpermissions: 0, + safeprojectintellectualpropertydevelopmentnewproductprocess: null, + }, + createdAt: { $date: { $numberLong: '1637592886679' } }, + updatedAt: { $date: { $numberLong: '1637601834397' } }, + __v: 0, +}; diff --git a/src/resources/questionbank/__mocks__/noSchemaExists.js b/src/resources/questionbank/__mocks__/noSchemaExists.js new file mode 100644 index 00000000..7140153a --- /dev/null +++ b/src/resources/questionbank/__mocks__/noSchemaExists.js @@ -0,0 +1,18 @@ +export const expectedQuestionStatus = { + safepeopleprimaryapplicantfullname: 0, + safepeopleprimaryapplicantjobtitle: 1, + safepeopleprimaryapplicanttelephone: 0, + safepeopleprimaryapplicantorcid: 1, + safepeopleprimaryapplicantemail: 0, + safepeopleotherindividualsfullname: 1, + safepeopleotherindividualsjobtitle: 0, + safepeopleotherindividualsorganisation: 0, + safepeopleotherindividualsrole: 0, + safepeopleotherindividualsaccessdata: 1, + safepeopleotherindividualsaccreditedresearcher: 0, + safepeopleotherindividualstraininginformationgovernance: 0, + safepeopleotherindividualsexperience: 1, +}; + +export const expectedGuidance = {}; +export const expectedCountOfChanges = 0; diff --git a/src/resources/questionbank/__mocks__/questionbank.js b/src/resources/questionbank/__mocks__/questionbank.js index 692754a8..354f0941 100644 --- a/src/resources/questionbank/__mocks__/questionbank.js +++ b/src/resources/questionbank/__mocks__/questionbank.js @@ -1,4 +1,4 @@ -export const publisherStub = { +export const publisherDocument = { _id: '5f3f98068af2ef61552e1d75', name: 'ALLIANCE > SAIL', active: true, @@ -11,7 +11,7 @@ export const publisherStub = { mdcFolderId: 'c4f50de0-2188-426b-a6cd-6b11a8d6c3cb', }; -export const globalStub = { +export const globalDocument = { masterSchema: { questionSets: [ { @@ -201,103 +201,3 @@ export const globalStub = { ], }, }; - -export const questionStatusMissingEntriesStub = { - safepeopleprimaryapplicantfullname: 0, - safepeopleprimaryapplicantjobtitle: 1, - safepeopleprimaryapplicanttelephone: 0, - safepeopleprimaryapplicantorcid: 1, - safepeopleprimaryapplicantemail: 0, - safepeopleotherindividualsfullname: 1, - safepeopleotherindividualsjobtitle: 0, - safepeopleotherindividualsorganisation: 0, - safepeopleotherindividualsrole: 0, - safepeopleotherindividualsaccessdata: 1, - safepeopleotherindividualsaccreditedresearcher: 0, - safepeopleotherindividualstraininginformationgovernance: 0, - safepeopleotherindividualsexperience: 1, -}; - -export const dataRequestSchemaDraftStub = { - _id: { $oid: '619baf36eb175aaacd592bbb' }, - version: 1, - dataSetId: '', - publisher: 'ALLIANCE > SAIL', - formType: '5 safe', - countOfChanges: 1, - status: 'draft', - isCloneable: true, - guidance: { - safepeopleprimaryapplicantfullname: 'Guidance for safepeopleprimaryapplicantfullname', - safepeopleprimaryapplicantjobtitle: 'Guidance for safepeopleprimaryapplicantjobtitle', - safepeopleprimaryapplicanttelephone: 'Guidance for safepeopleprimaryapplicanttelephone', - }, - questionStatus: { - safepeopleprimaryapplicantfullname: 0, - safepeopleprimaryapplicantjobtitle: 1, - safepeopleprimaryapplicanttelephone: 0, - safepeopleprimaryapplicantorcid: 1, - safepeopleprimaryapplicantemail: 0, - safepeopleprimaryapplicantaccessdata: 0, - safepeopleprimaryapplicantaccreditedresearcher: 0, - safepeopleprimaryapplicanttraininginformationgovernance: 0, - safepeopleprimaryapplicantorganisationname: 0, - safepeopleprimaryapplicantorganisationdatasecurityprotectionkit: 0, - safepeopleprimaryapplicantorganisationdatacontroller: 0, - safepeopleotherindividualsfullname: 0, - safepeopleotherindividualsjobtitle: 0, - safepeopleotherindividualsorganisation: 0, - safepeopleotherindividualsrole: 0, - safepeopleotherindividualsaccessdata: 0, - safepeopleotherindividualsaccreditedresearcher: 0, - safepeopleotherindividualstraininginformationgovernance: 0, - safepeopleotherindividualsexperience: 0, - 'add-safepeople-otherindividuals': 0, - safeprojectaboutthisapplicationtype: 0, - safeprojectprojectdetailstitle: 0, - safeprojectprojectdetailstype: 0, - safeprojectprojectdetailsneworexisting: 0, - safeprojectprojectdetailslaysummary: 0, - 'safeproject-projectdetails-startdate': 0, - 'safeproject-projectdetails-enddate': 0, - safeprojectprojectdetailsaimsobjectivesrationale: 0, - safeprojectprojectdetailsdatausageforobjectives: 0, - safeprojectprojectdetailspublicbenefitimpact: 0, - safeprojectprojectdetailspublicpatientinvolvementengagement: 0, - safeprojectprojectdetailsindividualprivacyriskmitigation: 0, - safeprojectprojectdetailsgroupindividualdisavantageavoidance: 0, - safeprojectprojectdetailsresearchprojectsummarykeywords: 0, - safeprojectprojectdetailsresearchprojectfuturedatabasebenefit: 0, - safeprojectfunderinformationprojecthasfunder: 0, - safeprojectsponsorinformationprojecthassponsor: 0, - safeprojectdeclarationofinteresthascommercialinterest: 0, - safedatadatafieldsdatarequiredjustification: 0, - safedatadatafieldsfileuploaded: 0, - safedatadatafieldsinclusionexclusioncriteria: 0, - safedatadatafieldsdatarefreshrequired: 0, - safedataotherdatasetslinkadditionaldatasets: 0, - safedataotherdatasetsrisksmitigations: 0, - safedatalawfulbasisgdprarticle6basis: 0, - safedatalawfulbasisgdprarticle6basisjustification: 0, - safedatalawfulbasisgdprarticle9conditions: 0, - safedatalawfulbasisgdprarticle9basisjustification: 0, - safedataconfidentialityavenuelegalbasisconfidentialinformation: 0, - safedataethicsapprovalinsightresearch: 0, - safedataethicsapprovalapprovalobtained: 0, - safedatastorageandprocessingaccessmethod: 0, - safedatadataflowdatatransferedoutsideuk: 0, - safedatadataflowregionsdataprocessed: 0, - safedatadataflowdetailedinformation: 0, - safedatadataflowdiagramenclosed: 0, - safeoutputsoutputsdisseminationplansproposalfindings: 0, - safeoutputsoutputsdisseminationplansmilestones: 0, - safeoutputsoutputsdisseminationplansdisclosurecontrolpolicy: 0, - 'safeoutputs-dataretention-retaindatadate': 0, - safeoutputsdataretentionretaindatadatereason: 0, - safeoutputsdataretentionretaindataextensionpermissions: 0, - safeprojectintellectualpropertydevelopmentnewproductprocess: null, - }, - createdAt: { $date: { $numberLong: '1637592886679' } }, - updatedAt: { $date: { $numberLong: '1637601834397' } }, - __v: 0, -}; diff --git a/src/resources/questionbank/__tests__/questionbank.service.test.js b/src/resources/questionbank/__tests__/questionbank.service.test.js index 5785e6da..c4935de3 100644 --- a/src/resources/questionbank/__tests__/questionbank.service.test.js +++ b/src/resources/questionbank/__tests__/questionbank.service.test.js @@ -2,62 +2,78 @@ import sinon from 'sinon'; import DataRequestRepository from '../../datarequest/datarequest.repository'; import QuestionBankService from '../questionbank.service'; import GlobalService from '../../global/global.service'; -import { globalStub, publisherStub, questionStatusMissingEntriesStub, dataRequestSchemaDraftStub } from '../__mocks__/questionbank'; +import * as questionBank from '../__mocks__/questionbank'; import PublisherService from '../../publisher/publisher.service'; import QuestionBankRepository from '../questionbank.repository'; import PublisherRepository from '../../publisher/publisher.repository'; +import * as activeSchemaNotCreatedThroughForm from '../__mocks__/activeSchemaNotCreatedThroughForm'; +import * as activeSchemaCreatedThroughForm from '../__mocks__/activeSchemaCreatedThroughForm'; +import * as draftSchemaNotCreatedThroughForm from '../__mocks__/draftSchemaCreatedThroughForm'; +import * as noSchemaExists from '../__mocks__/noSchemaExists'; describe('Question Bank Service', function () { - it('When no entry exists in the schema', async function () { - //dataSchemaModel - const dataRequestRepository = new DataRequestRepository(); - const dataRequestRepositoryStub = sinon.stub(dataRequestRepository, 'getApplicationFormSchemas').returns([]); - const dataRequestRepositoryStub2 = sinon.stub(dataRequestRepository, 'createApplicationFormSchema'); - - const globalService = new GlobalService(); - const globalServiceStub = sinon.stub(globalService, 'getGlobal').returns(globalStub); + const dataRequestRepository = new DataRequestRepository(); + sinon.stub(dataRequestRepository, 'createApplicationFormSchema'); + const globalService = new GlobalService(); + sinon.stub(globalService, 'getGlobal').returns(questionBank.globalDocument); + const publisherRepository = new PublisherRepository(); + sinon.stub(publisherRepository, 'getPublisher').returns(questionBank.publisherDocument); + const publisherService = new PublisherService(publisherRepository); + const questionBankRepository = new QuestionBankRepository(); + const questionBankService = new QuestionBankService(questionBankRepository, publisherService, globalService, dataRequestRepository); + let dataRequestRepositoryStub; + + afterEach(function () { + dataRequestRepositoryStub.restore(); + }); - const publisherRepository = new PublisherRepository(); - const publisherRepositoryStub = sinon.stub(publisherRepository, 'getPublisher').returns({}); + it('No data request schema exists', async function () { + dataRequestRepositoryStub = sinon.stub(dataRequestRepository, 'getApplicationFormSchemas').returns([]); - const publisherService = new PublisherService(publisherRepository); + const result = await questionBankService.getQuestionBankInfo(questionBank.publisherDocument._id); - const questionBankRepository = new QuestionBankRepository(); + expect(result.questionStatus).toEqual(noSchemaExists.expectedQuestionStatus); + expect(result.guidance).toEqual(noSchemaExists.expectedGuidance); + expect(result.countOfChanges).toEqual(noSchemaExists.expectedCountOfChanges); + expect(result.masterSchema).toEqual(questionBank.globalDocument.masterSchema); + }); - const questionBankService = new QuestionBankService(questionBankRepository, publisherService, globalService, dataRequestRepository); + it('Draft data request schema exists created through the customize form', async function () { + dataRequestRepositoryStub = sinon + .stub(dataRequestRepository, 'getApplicationFormSchemas') + .returns([draftSchemaNotCreatedThroughForm.dataRequestSchema]); - const result = await questionBankService.getQuestionBankInfo(publisherStub._id); + const result = await questionBankService.getQuestionBankInfo(questionBank.publisherDocument._id); - //Il risultato - expect(result.questionStatus).toEqual(questionStatusMissingEntriesStub); - expect(result.guidance).toEqual({}); - expect(result.countOfChanges).toEqual(0); - expect(result.masterSchema).toEqual(globalStub.masterSchema); + expect(result.questionStatus).toEqual(draftSchemaNotCreatedThroughForm.dataRequestSchema.questionStatus); + expect(result.guidance).toEqual(draftSchemaNotCreatedThroughForm.dataRequestSchema.guidance); + expect(result.countOfChanges).toEqual(draftSchemaNotCreatedThroughForm.dataRequestSchema.countOfChanges); + expect(result.masterSchema).toEqual(questionBank.globalDocument.masterSchema); }); - it('When entry exists in draft status', async function () { - //dataSchemaModel - const dataRequestRepository = new DataRequestRepository(); - const dataRequestRepositoryStub = sinon.stub(dataRequestRepository, 'getApplicationFormSchemas').returns([dataRequestSchemaDraftStub]); - const dataRequestRepositoryStub2 = sinon.stub(dataRequestRepository, 'createApplicationFormSchema'); + it('Active data request schema exists created through the customize form', async function () { + dataRequestRepositoryStub = sinon + .stub(dataRequestRepository, 'getApplicationFormSchemas') + .returns([activeSchemaCreatedThroughForm.dataRequestSchema]); - const globalService = new GlobalService(); - const globalServiceStub = sinon.stub(globalService, 'getGlobal').returns(globalStub); + const result = await questionBankService.getQuestionBankInfo(questionBank.publisherDocument._id); - const publisherRepository = new PublisherRepository(); - const publisherRepositoryStub = sinon.stub(publisherRepository, 'getPublisher').returns({}); - - const publisherService = new PublisherService(publisherRepository); - - const questionBankRepository = new QuestionBankRepository(); + expect(result.masterSchema).toEqual(questionBank.globalDocument.masterSchema); + expect(result.guidance).toEqual(activeSchemaCreatedThroughForm.expectedGuidance); + expect(result.questionStatus).toEqual(activeSchemaCreatedThroughForm.expectedQuestionStatus); + expect(result.countOfChanges).toEqual(activeSchemaCreatedThroughForm.expectedCountOfChanges); + }); - const questionBankService = new QuestionBankService(questionBankRepository, publisherService, globalService, dataRequestRepository); + it('Active data request schema exists not created through the customize form', async function () { + dataRequestRepositoryStub = sinon + .stub(dataRequestRepository, 'getApplicationFormSchemas') + .returns([activeSchemaNotCreatedThroughForm.dataRequestSchema]); - const result = await questionBankService.getQuestionBankInfo(publisherStub._id); + const result = await questionBankService.getQuestionBankInfo(questionBank.publisherDocument._id); - expect(result.questionStatus).toEqual(dataRequestSchemaDraftStub.questionStatus); - expect(result.guidance).toEqual(dataRequestSchemaDraftStub.guidance); - expect(result.countOfChanges).toEqual(dataRequestSchemaDraftStub.countOfChanges); - expect(result.masterSchema).toEqual(globalStub.masterSchema); + expect(result.questionStatus).toEqual(activeSchemaNotCreatedThroughForm.expectedQuestionStatus); + expect(result.guidance).toEqual(activeSchemaNotCreatedThroughForm.expectedGuidance); + expect(result.countOfChanges).toEqual(activeSchemaNotCreatedThroughForm.expectedCountOfChanges); + expect(result.masterSchema).toEqual(questionBank.globalDocument.masterSchema); }); }); diff --git a/src/resources/questionbank/questionbank.service.js b/src/resources/questionbank/questionbank.service.js index 7f031669..b47f25a8 100644 --- a/src/resources/questionbank/questionbank.service.js +++ b/src/resources/questionbank/questionbank.service.js @@ -1,4 +1,4 @@ -import { isEmpty } from 'lodash'; +import { isEmpty, has } from 'lodash'; export default class QuestionbankService { constructor(questionbankRepository, publisherService, globalService, dataRequestRepository) { @@ -88,7 +88,7 @@ export default class QuestionbankService { //check for new questions in the master schema and add those masterSchema.questionSets.forEach(questionSet => { questionSet.questions.forEach(question => { - if (!Object.keys(latestSchemaVersion.questionStatus).includes(question.questionId)) { + if (!has(latestSchemaVersion.questionStatus, question.questionId)) { newQuestionStatus[question.questionId] = question.defaultQuestion; } }); @@ -118,16 +118,15 @@ export default class QuestionbankService { const guidance = {}; const jsonSchema = latestSchemaVersion.jsonSchema; - let questionIds = []; jsonSchema.questionSets.forEach(questionSet => { - questionIds = [...questionIds, ...questionSet.questions.map(question => question.questionId)]; + questionSet.questions.forEach(question => { + questionStatus[question.questionId] = 1; + }); }); masterSchema.questionSets.forEach(questionSet => { questionSet.questions.forEach(question => { - if (questionIds.includes(question.questionId)) { - questionStatus[question.questionId] = 1; - } else { + if (!has(questionStatus, question.questionId)) { questionStatus[question.questionId] = question.defaultQuestion; } }); From 1ac45b1428623bfbf57eb55b76dc211916e35292 Mon Sep 17 00:00:00 2001 From: massimocianfroccaPA Date: Thu, 25 Nov 2021 12:18:01 +0000 Subject: [PATCH 07/67] Create functions to generate question status object --- .../questionbank/questionbank.service.js | 84 +++++++++---------- 1 file changed, 42 insertions(+), 42 deletions(-) diff --git a/src/resources/questionbank/questionbank.service.js b/src/resources/questionbank/questionbank.service.js index b47f25a8..79919b88 100644 --- a/src/resources/questionbank/questionbank.service.js +++ b/src/resources/questionbank/questionbank.service.js @@ -30,6 +30,7 @@ export default class QuestionbankService { if (isEmpty(dataRequestSchemas)) { let questionStatus = {}; + //create the questionStatus from the master schema masterSchema.questionSets.forEach(questionSet => { questionSet.questions.forEach(question => { questionStatus[question.questionId] = question.defaultQuestion; @@ -49,27 +50,18 @@ export default class QuestionbankService { return { masterSchema, - questionStatus, - guidance: {}, - countOfChanges: 0, + questionStatus: newSchema.questionStatus, + guidance: newSchema.guidance, + countOfChanges: newSchema.countOfChanges, }; } const latestSchemaVersion = dataRequestSchemas[0]; if (latestSchemaVersion.status === 'draft') { - //check if new questions added in the masterSchema let newQuestionStatus = latestSchemaVersion.questionStatus; - let newQuestionsAdded = false; - - masterSchema.questionSets.forEach(questionSet => { - questionSet.questions.forEach(question => { - if (!Object.keys(latestSchemaVersion.questionStatus).includes(question.questionId)) { - newQuestionStatus[question.questionId] = question.defaultQuestion; - newQuestionsAdded = true; - } - }); - }); + let newQuestionsAdded = this.addQuestionsFromMasterSchema(masterSchema, latestSchemaVersion, newQuestionStatus); + //Add new questions from the master schema if any if (newQuestionsAdded) await this.dataRequestRepository.updateApplicationFormSchemaById(latestSchemaVersion._id, { questionStatus: newQuestionStatus }); @@ -85,14 +77,8 @@ export default class QuestionbankService { if (!isEmpty(latestSchemaVersion.questionStatus)) { let newQuestionStatus = latestSchemaVersion.questionStatus; - //check for new questions in the master schema and add those - masterSchema.questionSets.forEach(questionSet => { - questionSet.questions.forEach(question => { - if (!has(latestSchemaVersion.questionStatus, question.questionId)) { - newQuestionStatus[question.questionId] = question.defaultQuestion; - } - }); - }); + //Add new questions from the master schema if any + this.addQuestionsFromMasterSchema(masterSchema, latestSchemaVersion, newQuestionStatus); const newSchema = { publisher: publisher.name, @@ -113,31 +99,21 @@ export default class QuestionbankService { countOfChanges: newSchema.countOfChanges, }; } else { - //need to create the question status from the current jsonSchema let questionStatus = {}; - const guidance = {}; - const jsonSchema = latestSchemaVersion.jsonSchema; - jsonSchema.questionSets.forEach(questionSet => { - questionSet.questions.forEach(question => { - questionStatus[question.questionId] = 1; - }); - }); + //Add questions from the publisher schema + this.addQuestionsFromPublisherSchema(latestSchemaVersion, questionStatus); - masterSchema.questionSets.forEach(questionSet => { - questionSet.questions.forEach(question => { - if (!has(questionStatus, question.questionId)) { - questionStatus[question.questionId] = question.defaultQuestion; - } - }); - }); + //Add question from master schema if not in the publisher schema + this.addQuestionsFromMasterSchema(masterSchema, latestSchemaVersion, questionStatus); const newSchema = { publisher: publisher.name, status: 'draft', isCloneable: true, questionStatus, - guidance, + guidance: {}, + countOfChanges: 0, version: latestSchemaVersion.version + 1, }; @@ -145,12 +121,36 @@ export default class QuestionbankService { return { masterSchema, - questionStatus, - guidance: {}, - countOfChanges: 0, - version: latestSchemaVersion.version + 1, + questionStatus: newSchema.questionStatus, + guidance: newSchema.guidance, + countOfChanges: newSchema.countOfChanges, }; } } } + + addQuestionsFromPublisherSchema(publisherSchema, questionStatus) { + const jsonSchema = publisherSchema.jsonSchema; + jsonSchema.questionSets.forEach(questionSet => { + questionSet.questions.forEach(question => { + questionStatus[question.questionId] = 1; + }); + }); + } + + addQuestionsFromMasterSchema(masterSchema, publisherSchema, questionStatus) { + let newQuestionsAdded = false; + + //Add new questions from the master schema if any + masterSchema.questionSets.forEach(questionSet => { + questionSet.questions.forEach(question => { + if (!has(publisherSchema.questionStatus, question.questionId)) { + questionStatus[question.questionId] = question.defaultQuestion; + newQuestionsAdded = true; + } + }); + }); + + return newQuestionsAdded; + } } From 7365e5975255e90ed1b80b10256ecb036aa09ba7 Mon Sep 17 00:00:00 2001 From: massimocianfroccaPA Date: Fri, 26 Nov 2021 12:02:59 +0000 Subject: [PATCH 08/67] Add schemaId to the data returned by the get API --- .../datarequest/datarequest.repository.js | 2 +- .../activeSchemaCreatedThroughForm.js | 56 +++++++++---------- .../activeSchemaNotCreatedThroughForm.js | 55 +++++++++--------- .../draftSchemaCreatedThroughForm.js | 2 +- .../questionbank/__mocks__/noSchemaExists.js | 36 ++++++------ .../__tests__/questionbank.service.test.js | 44 +++++++++------ .../questionbank/questionbank.service.js | 16 ++++-- 7 files changed, 115 insertions(+), 96 deletions(-) diff --git a/src/resources/datarequest/datarequest.repository.js b/src/resources/datarequest/datarequest.repository.js index 0d870c91..295a2cfa 100644 --- a/src/resources/datarequest/datarequest.repository.js +++ b/src/resources/datarequest/datarequest.repository.js @@ -171,7 +171,7 @@ export default class DataRequestRepository extends Repository { createApplicationFormSchema(newSchema) { const newSchemaModel = new DataRequestSchemaModel(newSchema); - DataRequestSchemaModel.create(newSchemaModel); + return DataRequestSchemaModel.create(newSchemaModel); } updateApplicationFormSchemaById(id, data, options = {}) { diff --git a/src/resources/questionbank/__mocks__/activeSchemaCreatedThroughForm.js b/src/resources/questionbank/__mocks__/activeSchemaCreatedThroughForm.js index f5e53dda..ca1cc68c 100644 --- a/src/resources/questionbank/__mocks__/activeSchemaCreatedThroughForm.js +++ b/src/resources/questionbank/__mocks__/activeSchemaCreatedThroughForm.js @@ -25,32 +25,32 @@ export const dataRequestSchema = { }, }; -export const expectedQuestionStatus = { - safedatadataflowdiagramenclosed: 1, - safeoutputsoutputsdisseminationplansproposalfindings: 0, - safeoutputsoutputsdisseminationplansmilestones: 0, - safeoutputsoutputsdisseminationplansdisclosurecontrolpolicy: 0, - 'safeoutputs-dataretention-retaindatadate': 0, - safeoutputsdataretentionretaindatadatereason: 1, - safeoutputsdataretentionretaindataextensionpermissions: 0, - safepeopleprimaryapplicantfullname: 0, - safepeopleprimaryapplicantjobtitle: 1, - safepeopleprimaryapplicanttelephone: 0, - safepeopleprimaryapplicantorcid: 1, - safepeopleprimaryapplicantemail: 0, - safepeopleotherindividualsfullname: 1, - safepeopleotherindividualsjobtitle: 0, - safepeopleotherindividualsorganisation: 0, - safepeopleotherindividualsrole: 0, - safepeopleotherindividualsaccessdata: 1, - safepeopleotherindividualsaccreditedresearcher: 0, - safepeopleotherindividualstraininginformationgovernance: 0, - safepeopleotherindividualsexperience: 1, -}; - -export const expectedGuidance = { - safedatadataflowdiagramenclosed: 'This is the guidance for safedatadataflowdiagramenclosed', - 'safeoutputs-dataretention-retaindatadate': 'This is the guidance for safeoutputs-dataretention-retaindatadate', +export const expectedSchema = { + questionStatus: { + safedatadataflowdiagramenclosed: 1, + safeoutputsoutputsdisseminationplansproposalfindings: 0, + safeoutputsoutputsdisseminationplansmilestones: 0, + safeoutputsoutputsdisseminationplansdisclosurecontrolpolicy: 0, + 'safeoutputs-dataretention-retaindatadate': 0, + safeoutputsdataretentionretaindatadatereason: 1, + safeoutputsdataretentionretaindataextensionpermissions: 0, + safepeopleprimaryapplicantfullname: 0, + safepeopleprimaryapplicantjobtitle: 1, + safepeopleprimaryapplicanttelephone: 0, + safepeopleprimaryapplicantorcid: 1, + safepeopleprimaryapplicantemail: 0, + safepeopleotherindividualsfullname: 1, + safepeopleotherindividualsjobtitle: 0, + safepeopleotherindividualsorganisation: 0, + safepeopleotherindividualsrole: 0, + safepeopleotherindividualsaccessdata: 1, + safepeopleotherindividualsaccreditedresearcher: 0, + safepeopleotherindividualstraininginformationgovernance: 0, + safepeopleotherindividualsexperience: 1, + }, + guidance: { + safedatadataflowdiagramenclosed: 'This is the guidance for safedatadataflowdiagramenclosed', + 'safeoutputs-dataretention-retaindatadate': 'This is the guidance for safeoutputs-dataretention-retaindatadate', + }, + countOfChanges: 0, }; - -export const expectedCountOfChanges = 0; diff --git a/src/resources/questionbank/__mocks__/activeSchemaNotCreatedThroughForm.js b/src/resources/questionbank/__mocks__/activeSchemaNotCreatedThroughForm.js index ceac4331..244a634b 100644 --- a/src/resources/questionbank/__mocks__/activeSchemaNotCreatedThroughForm.js +++ b/src/resources/questionbank/__mocks__/activeSchemaNotCreatedThroughForm.js @@ -301,31 +301,32 @@ export const dataRequestSchema = { }; //Combination of the questions in the active schema and the questions in the master schema -export const expectedQuestionStatus = { - safedatadataflowdatatransferedoutsideuk: 1, - safedatadataflowregionsdataprocessed: 1, - safedatadataflowdetailedinformation: 1, - safedatadataflowdiagramenclosed: 1, - safeoutputsoutputsdisseminationplansproposalfindings: 1, - safeoutputsoutputsdisseminationplansmilestones: 1, - safeoutputsoutputsdisseminationplansdisclosurecontrolpolicy: 1, - 'safeoutputs-dataretention-retaindatadate': 1, - safeoutputsdataretentionretaindatadatereason: 1, - safeoutputsdataretentionretaindataextensionpermissions: 1, - safepeopleprimaryapplicantfullname: 0, - safepeopleprimaryapplicantjobtitle: 1, - safepeopleprimaryapplicanttelephone: 0, - safepeopleprimaryapplicantorcid: 1, - safepeopleprimaryapplicantemail: 0, - safepeopleotherindividualsfullname: 1, - safepeopleotherindividualsjobtitle: 0, - safepeopleotherindividualsorganisation: 0, - safepeopleotherindividualsrole: 0, - safepeopleotherindividualsaccessdata: 1, - safepeopleotherindividualsaccreditedresearcher: 0, - safepeopleotherindividualstraininginformationgovernance: 0, - safepeopleotherindividualsexperience: 1, +export const expectedSchema = { + questionStatus: { + safedatadataflowdatatransferedoutsideuk: 1, + safedatadataflowregionsdataprocessed: 1, + safedatadataflowdetailedinformation: 1, + safedatadataflowdiagramenclosed: 1, + safeoutputsoutputsdisseminationplansproposalfindings: 1, + safeoutputsoutputsdisseminationplansmilestones: 1, + safeoutputsoutputsdisseminationplansdisclosurecontrolpolicy: 1, + 'safeoutputs-dataretention-retaindatadate': 1, + safeoutputsdataretentionretaindatadatereason: 1, + safeoutputsdataretentionretaindataextensionpermissions: 1, + safepeopleprimaryapplicantfullname: 0, + safepeopleprimaryapplicantjobtitle: 1, + safepeopleprimaryapplicanttelephone: 0, + safepeopleprimaryapplicantorcid: 1, + safepeopleprimaryapplicantemail: 0, + safepeopleotherindividualsfullname: 1, + safepeopleotherindividualsjobtitle: 0, + safepeopleotherindividualsorganisation: 0, + safepeopleotherindividualsrole: 0, + safepeopleotherindividualsaccessdata: 1, + safepeopleotherindividualsaccreditedresearcher: 0, + safepeopleotherindividualstraininginformationgovernance: 0, + safepeopleotherindividualsexperience: 1, + }, + guidance: {}, + countOfChanges: 0, }; - -export const expectedGuidance = {}; -export const expectedCountOfChanges = 0; diff --git a/src/resources/questionbank/__mocks__/draftSchemaCreatedThroughForm.js b/src/resources/questionbank/__mocks__/draftSchemaCreatedThroughForm.js index d45f25d5..00779cec 100644 --- a/src/resources/questionbank/__mocks__/draftSchemaCreatedThroughForm.js +++ b/src/resources/questionbank/__mocks__/draftSchemaCreatedThroughForm.js @@ -1,5 +1,5 @@ export const dataRequestSchema = { - _id: { $oid: '619baf36eb175aaacd592bbb' }, + _id: '619baf36eb175aaacd592bbb', version: 1, dataSetId: '', publisher: 'ALLIANCE > SAIL', diff --git a/src/resources/questionbank/__mocks__/noSchemaExists.js b/src/resources/questionbank/__mocks__/noSchemaExists.js index 7140153a..04493ff0 100644 --- a/src/resources/questionbank/__mocks__/noSchemaExists.js +++ b/src/resources/questionbank/__mocks__/noSchemaExists.js @@ -1,18 +1,20 @@ -export const expectedQuestionStatus = { - safepeopleprimaryapplicantfullname: 0, - safepeopleprimaryapplicantjobtitle: 1, - safepeopleprimaryapplicanttelephone: 0, - safepeopleprimaryapplicantorcid: 1, - safepeopleprimaryapplicantemail: 0, - safepeopleotherindividualsfullname: 1, - safepeopleotherindividualsjobtitle: 0, - safepeopleotherindividualsorganisation: 0, - safepeopleotherindividualsrole: 0, - safepeopleotherindividualsaccessdata: 1, - safepeopleotherindividualsaccreditedresearcher: 0, - safepeopleotherindividualstraininginformationgovernance: 0, - safepeopleotherindividualsexperience: 1, +export const expectedSchema = { + _id: '619baf36eb175aaacd592bbb', + questionStatus: { + safepeopleprimaryapplicantfullname: 0, + safepeopleprimaryapplicantjobtitle: 1, + safepeopleprimaryapplicanttelephone: 0, + safepeopleprimaryapplicantorcid: 1, + safepeopleprimaryapplicantemail: 0, + safepeopleotherindividualsfullname: 1, + safepeopleotherindividualsjobtitle: 0, + safepeopleotherindividualsorganisation: 0, + safepeopleotherindividualsrole: 0, + safepeopleotherindividualsaccessdata: 1, + safepeopleotherindividualsaccreditedresearcher: 0, + safepeopleotherindividualstraininginformationgovernance: 0, + safepeopleotherindividualsexperience: 1, + }, + guidance: {}, + countOfChanges: 0, }; - -export const expectedGuidance = {}; -export const expectedCountOfChanges = 0; diff --git a/src/resources/questionbank/__tests__/questionbank.service.test.js b/src/resources/questionbank/__tests__/questionbank.service.test.js index c4935de3..462d6982 100644 --- a/src/resources/questionbank/__tests__/questionbank.service.test.js +++ b/src/resources/questionbank/__tests__/questionbank.service.test.js @@ -13,7 +13,6 @@ import * as noSchemaExists from '../__mocks__/noSchemaExists'; describe('Question Bank Service', function () { const dataRequestRepository = new DataRequestRepository(); - sinon.stub(dataRequestRepository, 'createApplicationFormSchema'); const globalService = new GlobalService(); sinon.stub(globalService, 'getGlobal').returns(questionBank.globalDocument); const publisherRepository = new PublisherRepository(); @@ -21,25 +20,30 @@ describe('Question Bank Service', function () { const publisherService = new PublisherService(publisherRepository); const questionBankRepository = new QuestionBankRepository(); const questionBankService = new QuestionBankService(questionBankRepository, publisherService, globalService, dataRequestRepository); - let dataRequestRepositoryStub; + let dataRequestRepositoryStubGet; + let dataRequestRepositoryStubCreate; afterEach(function () { - dataRequestRepositoryStub.restore(); + dataRequestRepositoryStubGet.restore(); + dataRequestRepositoryStubCreate.restore(); }); it('No data request schema exists', async function () { - dataRequestRepositoryStub = sinon.stub(dataRequestRepository, 'getApplicationFormSchemas').returns([]); + dataRequestRepositoryStubGet = sinon.stub(dataRequestRepository, 'getApplicationFormSchemas').returns([]); + dataRequestRepositoryStubCreate = sinon + .stub(dataRequestRepository, 'createApplicationFormSchema') + .returns(noSchemaExists.expectedSchema); const result = await questionBankService.getQuestionBankInfo(questionBank.publisherDocument._id); - expect(result.questionStatus).toEqual(noSchemaExists.expectedQuestionStatus); - expect(result.guidance).toEqual(noSchemaExists.expectedGuidance); - expect(result.countOfChanges).toEqual(noSchemaExists.expectedCountOfChanges); + expect(result.questionStatus).toEqual(noSchemaExists.expectedSchema.questionStatus); + expect(result.guidance).toEqual(noSchemaExists.expectedSchema.guidance); + expect(result.countOfChanges).toEqual(noSchemaExists.expectedSchema.countOfChanges); expect(result.masterSchema).toEqual(questionBank.globalDocument.masterSchema); }); it('Draft data request schema exists created through the customize form', async function () { - dataRequestRepositoryStub = sinon + dataRequestRepositoryStubGet = sinon .stub(dataRequestRepository, 'getApplicationFormSchemas') .returns([draftSchemaNotCreatedThroughForm.dataRequestSchema]); @@ -52,28 +56,36 @@ describe('Question Bank Service', function () { }); it('Active data request schema exists created through the customize form', async function () { - dataRequestRepositoryStub = sinon + dataRequestRepositoryStubGet = sinon .stub(dataRequestRepository, 'getApplicationFormSchemas') .returns([activeSchemaCreatedThroughForm.dataRequestSchema]); + dataRequestRepositoryStubCreate = sinon + .stub(dataRequestRepository, 'createApplicationFormSchema') + .returns(activeSchemaCreatedThroughForm.expectedSchema); + const result = await questionBankService.getQuestionBankInfo(questionBank.publisherDocument._id); expect(result.masterSchema).toEqual(questionBank.globalDocument.masterSchema); - expect(result.guidance).toEqual(activeSchemaCreatedThroughForm.expectedGuidance); - expect(result.questionStatus).toEqual(activeSchemaCreatedThroughForm.expectedQuestionStatus); - expect(result.countOfChanges).toEqual(activeSchemaCreatedThroughForm.expectedCountOfChanges); + expect(result.guidance).toEqual(activeSchemaCreatedThroughForm.expectedSchema.guidance); + expect(result.questionStatus).toEqual(activeSchemaCreatedThroughForm.expectedSchema.questionStatus); + expect(result.countOfChanges).toEqual(activeSchemaCreatedThroughForm.expectedSchema.countOfChanges); }); it('Active data request schema exists not created through the customize form', async function () { - dataRequestRepositoryStub = sinon + dataRequestRepositoryStubGet = sinon .stub(dataRequestRepository, 'getApplicationFormSchemas') .returns([activeSchemaNotCreatedThroughForm.dataRequestSchema]); + dataRequestRepositoryStubCreate = sinon + .stub(dataRequestRepository, 'createApplicationFormSchema') + .returns(activeSchemaNotCreatedThroughForm.expectedSchema); + const result = await questionBankService.getQuestionBankInfo(questionBank.publisherDocument._id); - expect(result.questionStatus).toEqual(activeSchemaNotCreatedThroughForm.expectedQuestionStatus); - expect(result.guidance).toEqual(activeSchemaNotCreatedThroughForm.expectedGuidance); - expect(result.countOfChanges).toEqual(activeSchemaNotCreatedThroughForm.expectedCountOfChanges); + expect(result.questionStatus).toEqual(activeSchemaNotCreatedThroughForm.expectedSchema.questionStatus); + expect(result.guidance).toEqual(activeSchemaNotCreatedThroughForm.expectedSchema.guidance); + expect(result.countOfChanges).toEqual(activeSchemaNotCreatedThroughForm.expectedSchema.countOfChanges); expect(result.masterSchema).toEqual(questionBank.globalDocument.masterSchema); }); }); diff --git a/src/resources/questionbank/questionbank.service.js b/src/resources/questionbank/questionbank.service.js index 79919b88..e387700a 100644 --- a/src/resources/questionbank/questionbank.service.js +++ b/src/resources/questionbank/questionbank.service.js @@ -46,13 +46,14 @@ export default class QuestionbankService { countOfChanges: 0, }; - await this.dataRequestRepository.createApplicationFormSchema(newSchema); + const schema = await this.dataRequestRepository.createApplicationFormSchema(newSchema); return { masterSchema, - questionStatus: newSchema.questionStatus, - guidance: newSchema.guidance, - countOfChanges: newSchema.countOfChanges, + questionStatus: schema.questionStatus, + guidance: schema.guidance, + countOfChanges: schema.countOfChanges, + schemaId: schema._id, }; } @@ -70,6 +71,7 @@ export default class QuestionbankService { questionStatus: newQuestionStatus, guidance: latestSchemaVersion.guidance, countOfChanges: latestSchemaVersion.countOfChanges, + schemaId: latestSchemaVersion._id, }; } @@ -90,13 +92,14 @@ export default class QuestionbankService { countOfChanges: 0, }; - await this.dataRequestRepository.createApplicationFormSchema(newSchema); + const schema = await this.dataRequestRepository.createApplicationFormSchema(newSchema); return { masterSchema, questionStatus: newSchema.questionStatus, guidance: newSchema.guidance, countOfChanges: newSchema.countOfChanges, + schemaId: schema._id, }; } else { let questionStatus = {}; @@ -117,13 +120,14 @@ export default class QuestionbankService { version: latestSchemaVersion.version + 1, }; - await this.dataRequestRepository.createApplicationFormSchema(newSchema); + const schema = await this.dataRequestRepository.createApplicationFormSchema(newSchema); return { masterSchema, questionStatus: newSchema.questionStatus, guidance: newSchema.guidance, countOfChanges: newSchema.countOfChanges, + schemaId: schema._id, }; } } From 582f4dc892cdd8e48e75f051de621e5a4eac0ef9 Mon Sep 17 00:00:00 2001 From: massimocianfroccaPA Date: Fri, 26 Nov 2021 12:09:54 +0000 Subject: [PATCH 09/67] Move masterSchema into test folder --- src/resources/questionbank/{ => __mocks__}/masterSchema.json | 0 1 file changed, 0 insertions(+), 0 deletions(-) rename src/resources/questionbank/{ => __mocks__}/masterSchema.json (100%) diff --git a/src/resources/questionbank/masterSchema.json b/src/resources/questionbank/__mocks__/masterSchema.json similarity index 100% rename from src/resources/questionbank/masterSchema.json rename to src/resources/questionbank/__mocks__/masterSchema.json From 6b66f46a2d7b82a5c9edf46737915a1241fb6c27 Mon Sep 17 00:00:00 2001 From: massimocianfroccaPA Date: Fri, 26 Nov 2021 12:22:26 +0000 Subject: [PATCH 10/67] Remove unnecessary classes --- .../questionbank/__mocks__/masterSchema.json | 1 + .../__tests__/questionbank.service.test.js | 4 +--- src/resources/questionbank/dependency.js | 4 +--- .../questionbank/questionbank.entity.js | 8 -------- .../questionbank/questionbank.model.js | 19 ------------------- .../questionbank/questionbank.repository.js | 19 ------------------- .../questionbank/questionbank.service.js | 15 +-------------- 7 files changed, 4 insertions(+), 66 deletions(-) delete mode 100644 src/resources/questionbank/questionbank.entity.js delete mode 100644 src/resources/questionbank/questionbank.model.js delete mode 100644 src/resources/questionbank/questionbank.repository.js diff --git a/src/resources/questionbank/__mocks__/masterSchema.json b/src/resources/questionbank/__mocks__/masterSchema.json index 0e09f4f2..25dc5c34 100644 --- a/src/resources/questionbank/__mocks__/masterSchema.json +++ b/src/resources/questionbank/__mocks__/masterSchema.json @@ -2330,3 +2330,4 @@ ] } } +git pus \ No newline at end of file diff --git a/src/resources/questionbank/__tests__/questionbank.service.test.js b/src/resources/questionbank/__tests__/questionbank.service.test.js index 462d6982..d3e7c0aa 100644 --- a/src/resources/questionbank/__tests__/questionbank.service.test.js +++ b/src/resources/questionbank/__tests__/questionbank.service.test.js @@ -4,7 +4,6 @@ import QuestionBankService from '../questionbank.service'; import GlobalService from '../../global/global.service'; import * as questionBank from '../__mocks__/questionbank'; import PublisherService from '../../publisher/publisher.service'; -import QuestionBankRepository from '../questionbank.repository'; import PublisherRepository from '../../publisher/publisher.repository'; import * as activeSchemaNotCreatedThroughForm from '../__mocks__/activeSchemaNotCreatedThroughForm'; import * as activeSchemaCreatedThroughForm from '../__mocks__/activeSchemaCreatedThroughForm'; @@ -18,8 +17,7 @@ describe('Question Bank Service', function () { const publisherRepository = new PublisherRepository(); sinon.stub(publisherRepository, 'getPublisher').returns(questionBank.publisherDocument); const publisherService = new PublisherService(publisherRepository); - const questionBankRepository = new QuestionBankRepository(); - const questionBankService = new QuestionBankService(questionBankRepository, publisherService, globalService, dataRequestRepository); + const questionBankService = new QuestionBankService(publisherService, globalService, dataRequestRepository); let dataRequestRepositoryStubGet; let dataRequestRepositoryStubCreate; diff --git a/src/resources/questionbank/dependency.js b/src/resources/questionbank/dependency.js index 67d88ac3..963889ac 100644 --- a/src/resources/questionbank/dependency.js +++ b/src/resources/questionbank/dependency.js @@ -1,9 +1,7 @@ -import QuestionbankRepository from './questionbank.repository'; import QuestionbankService from './questionbank.service'; import { publisherService } from '../publisher/dependency'; import { globalService } from '../global/dependency'; import DataRequestRepository from '../datarequest/datarequest.repository'; -export const questionbankRepository = new QuestionbankRepository(); export const dataRequestRepository = new DataRequestRepository(); -export const questionbankService = new QuestionbankService(questionbankRepository, publisherService, globalService, dataRequestRepository); +export const questionbankService = new QuestionbankService(publisherService, globalService, dataRequestRepository); diff --git a/src/resources/questionbank/questionbank.entity.js b/src/resources/questionbank/questionbank.entity.js deleted file mode 100644 index 9836a64b..00000000 --- a/src/resources/questionbank/questionbank.entity.js +++ /dev/null @@ -1,8 +0,0 @@ -import Entity from '../base/entity'; - -export default class QuestionbankClass extends Entity { - constructor(obj) { - super(); - Object.assign(this, obj); - } -} diff --git a/src/resources/questionbank/questionbank.model.js b/src/resources/questionbank/questionbank.model.js deleted file mode 100644 index 244e91d5..00000000 --- a/src/resources/questionbank/questionbank.model.js +++ /dev/null @@ -1,19 +0,0 @@ -import { model, Schema } from 'mongoose'; - -import QuestionbankClass from './questionbank.entity'; - -const questionbankSchema = new Schema( - { - // New object properties here - }, - { - timestamps: true, - toJSON: { virtuals: true }, - toObject: { virtuals: true }, - } -); - -// Load entity class -questionbankSchema.loadClass(QuestionbankClass); - -export const Questionbank = model('Questionbank', questionbankSchema); \ No newline at end of file diff --git a/src/resources/questionbank/questionbank.repository.js b/src/resources/questionbank/questionbank.repository.js deleted file mode 100644 index 4558938f..00000000 --- a/src/resources/questionbank/questionbank.repository.js +++ /dev/null @@ -1,19 +0,0 @@ -import Repository from '../base/repository'; -import { Questionbank } from './questionbank.model'; -import constants from '../utilities/constants.util'; - -export default class QuestionbankRepository extends Repository { - constructor() { - super(Questionbank); - this.questionbank = Questionbank; - } - - async getQuestionbank(query, options) { - return this.findOne(query, options); - } - - async getQuestionbanks(query) { - const options = { lean: true }; - return this.find(query, options); - } -} diff --git a/src/resources/questionbank/questionbank.service.js b/src/resources/questionbank/questionbank.service.js index e387700a..b5901b92 100644 --- a/src/resources/questionbank/questionbank.service.js +++ b/src/resources/questionbank/questionbank.service.js @@ -1,25 +1,12 @@ import { isEmpty, has } from 'lodash'; export default class QuestionbankService { - constructor(questionbankRepository, publisherService, globalService, dataRequestRepository) { - this.questionbankRepository = questionbankRepository; + constructor(publisherService, globalService, dataRequestRepository) { this.publisherService = publisherService; this.globalService = globalService; this.dataRequestRepository = dataRequestRepository; } - getQuestionbank(id, query = {}, options = {}) { - // Protect for no id passed - if (!id) return; - - query = { ...query, id }; - return this.questionbankRepository.getQuestionbank(query, options); - } - - getQuestionbanks(query = {}) { - return this.questionbankRepository.getQuestionbanks(query); - } - async getQuestionBankInfo(publisherId) { const publisher = await this.publisherService.getPublisher(publisherId); const global = await this.globalService.getGlobal({ localeId: 'en-gb' }); From a065c78ee0ec6bf289d70649f647550ad8b8a6c6 Mon Sep 17 00:00:00 2001 From: massimocianfroccaPA Date: Mon, 29 Nov 2021 13:40:07 +0000 Subject: [PATCH 11/67] implement PATCH api for data request schema --- .../schema/datarequest.schema.controller.js | 91 +++++++++++++++++++ .../schema/datarequest.schema.repository.js | 18 ++++ .../schema/datarequest.schema.service.js | 25 +++++ .../schema/datarequest.schemas.route.js | 47 ++++++++++ .../datarequest/schema/dependency.js | 5 + 5 files changed, 186 insertions(+) create mode 100644 src/resources/datarequest/schema/datarequest.schema.controller.js create mode 100644 src/resources/datarequest/schema/datarequest.schema.repository.js create mode 100644 src/resources/datarequest/schema/datarequest.schema.service.js create mode 100644 src/resources/datarequest/schema/dependency.js diff --git a/src/resources/datarequest/schema/datarequest.schema.controller.js b/src/resources/datarequest/schema/datarequest.schema.controller.js new file mode 100644 index 00000000..dd7add23 --- /dev/null +++ b/src/resources/datarequest/schema/datarequest.schema.controller.js @@ -0,0 +1,91 @@ +import Controller from '../../base/controller'; +import { logger } from '../../utilities/logger'; + +const logCategory = 'datarequestschema'; + +export default class DatarequestschemaController extends Controller { + constructor(datarequestschemaService) { + super(datarequestschemaService); + this.datarequestschemaService = datarequestschemaService; + } + + async getDatarequestschema(req, res) { + try { + // Extract id parameter from query string + const { id } = req.params; + // If no id provided, it is a bad request + if (!id) { + return res.status(400).json({ + success: false, + message: 'You must provide a datarequestschema identifier', + }); + } + // Find the datarequestschema + const datarequestschema = await this.datarequestschemaService.getDatarequestschemaById(id); + // Return if no datarequestschema found + if (!datarequestschema) { + return res.status(404).json({ + success: false, + message: 'A datarequestschema could not be found with the provided id', + }); + } + // Return the datarequestschema + return res.status(200).json({ + success: true, + ...datarequestschema, + }); + } catch (err) { + // Return error response if something goes wrong + console.error(err.message); + return res.status(500).json({ + success: false, + message: 'A server error occurred, please try again', + }); + } + } + + async getDatarequestschemas(req, res) { + try { + // Find the relevant datarequestschemas + const datarequestschemas = await this.datarequestschemaService.getDatarequestschemas(req.query).catch(err => { + logger.logError(err, logCategory); + }); + // Return the datarequestschemas + return res.status(200).json({ + success: true, + data: datarequestschemas, + }); + } catch (err) { + // Return error response if something goes wrong + logger.logError(err, logCategory); + return res.status(500).json({ + success: false, + message: 'A server error occurred, please try again', + }); + } + } + + async updateDatarequestschema(req, res) { + try { + const id = req.params.id; + const updatedSchema = req.body; + + // Find the relevant datarequestschemas + const datarequestschema = await this.datarequestschemaService.updateDatarequestschema(id, updatedSchema).catch(err => { + logger.logError(err, logCategory); + }); + // Return the datarequestschemas + return res.status(200).json({ + success: true, + data: datarequestschema, + }); + } catch (err) { + // Return error response if something goes wrong + logger.logError(err, logCategory); + return res.status(500).json({ + success: false, + message: 'A server error occurred, please try again', + }); + } + } +} diff --git a/src/resources/datarequest/schema/datarequest.schema.repository.js b/src/resources/datarequest/schema/datarequest.schema.repository.js new file mode 100644 index 00000000..3dec30c6 --- /dev/null +++ b/src/resources/datarequest/schema/datarequest.schema.repository.js @@ -0,0 +1,18 @@ +import Repository from '../../base/repository'; +import { DataRequestSchemaModel } from './datarequest.schemas.model'; + +export default class DatarequestschemaRepository extends Repository { + constructor() { + super(DataRequestSchemaModel); + this.datarequestschema = DataRequestSchemaModel; + } + + async getDatarequestschema(query, options) { + return this.findOne(query, options); + } + + async getDatarequestschemas(query) { + const options = { lean: true }; + return this.find(query, options); + } +} diff --git a/src/resources/datarequest/schema/datarequest.schema.service.js b/src/resources/datarequest/schema/datarequest.schema.service.js new file mode 100644 index 00000000..529041a4 --- /dev/null +++ b/src/resources/datarequest/schema/datarequest.schema.service.js @@ -0,0 +1,25 @@ +export default class DatarequestschemaService { + constructor(datarequestschemaRepository) { + this.datarequestschemaRepository = datarequestschemaRepository; + } + + getDatarequestschema(id, query = {}, options = {}) { + // Protect for no id passed + if (!id) return; + + query = { ...query, id }; + return this.datarequestschemaRepository.getDatarequestschema(query, options); + } + + getDatarequestschemaById(id) { + return this.datarequestschemaRepository.findById(id, { lean: true }); + } + + getDatarequestschemas(query = {}) { + return this.datarequestschemaRepository.getDatarequestschemas(query); + } + + updateDatarequestschema(id, datarequestschema) { + return this.datarequestschemaRepository.update(id, datarequestschema); + } +} diff --git a/src/resources/datarequest/schema/datarequest.schemas.route.js b/src/resources/datarequest/schema/datarequest.schemas.route.js index f6231bdd..3ce198c9 100644 --- a/src/resources/datarequest/schema/datarequest.schemas.route.js +++ b/src/resources/datarequest/schema/datarequest.schemas.route.js @@ -1,12 +1,55 @@ import express from 'express'; import passport from 'passport'; +import { isNull, isUndefined, isEmpty } from 'lodash'; import { DataRequestSchemaModel } from './datarequest.schemas.model'; +import DatarequestschemaController from './datarequest.schema.controller'; +import { datarequestschemaService } from './dependency'; import { utils } from '../../auth'; import { ROLES } from '../../user/user.roles'; +const datarequestschemaController = new DatarequestschemaController(datarequestschemaService); + const router = express.Router(); +function isUserMemberOfTeam(user, publisherName) { + let { teams } = user; + return teams.filter(team => !isNull(team.publisher)).some(team => team.publisher.name === publisherName); +} + +const validateUpdate = (req, res, next) => { + const { id } = req.params; + + if (isUndefined(id)) return res.status(400).json({ success: false, message: 'You must provide a valid data request Id' }); + + next(); +}; + +const authorizeUpdate = async (req, res, next) => { + const requestingUser = req.user; + const { id } = req.params; + + const datarequestschema = await datarequestschemaService.getDatarequestschemaById(id); + + if (isEmpty(datarequestschema)) { + return res.status(404).json({ + success: false, + message: 'The requested data request schema could not be found', + }); + } + + const authorised = isUserMemberOfTeam(requestingUser, datarequestschema.publisher); + + if (!authorised) { + return res.status(401).json({ + success: false, + message: 'You are not authorised to perform this action', + }); + } + + next(); +}; + // @router POST api/v1/data-access-request/schema // @desc Add a data request schema // @access Private @@ -37,6 +80,10 @@ router.get('/', passport.authenticate('jwt'), utils.checkIsInRole(ROLES.Admin, R return res.json({ jsonSchema: dataRequestSchema.jsonSchema }); }); +router.patch('/:id', passport.authenticate('jwt'), validateUpdate, authorizeUpdate, (req, res) => + datarequestschemaController.updateDatarequestschema(req, res) +); + module.exports = router; async function archiveOtherVersions(id, dataSetId, status) { diff --git a/src/resources/datarequest/schema/dependency.js b/src/resources/datarequest/schema/dependency.js new file mode 100644 index 00000000..06802a55 --- /dev/null +++ b/src/resources/datarequest/schema/dependency.js @@ -0,0 +1,5 @@ +import DatarequestschemaRepository from './datarequest.schema.repository'; +import DatarequestschemaService from './datarequest.schema.service'; + +export const datarequestschemaRepository = new DatarequestschemaRepository(); +export const datarequestschemaService = new DatarequestschemaService(datarequestschemaRepository); From 7220138c4373a6a2158a3c323663b68df3c4e47a Mon Sep 17 00:00:00 2001 From: Richard Date: Fri, 3 Dec 2021 10:15:02 +0000 Subject: [PATCH 12/67] Moved userIsManager check into middleware function --- src/resources/auth/utils.js | 13 +++++++++++++ .../publisher/publisher.controller.js | 18 ------------------ src/resources/publisher/publisher.route.js | 3 ++- 3 files changed, 15 insertions(+), 19 deletions(-) diff --git a/src/resources/auth/utils.js b/src/resources/auth/utils.js index 97cb301b..37a7ad5b 100644 --- a/src/resources/auth/utils.js +++ b/src/resources/auth/utils.js @@ -127,6 +127,18 @@ const getTeams = async () => { return teams; }; +const userIsTeamManager = () => async (req, res, next) => { + const { user, params } = req; + + const members = await TeamModel.findOne({ _id: params.id }, { _id: 0, members: { $elemMatch: { memberid: user._id } } }).lean(); + if (!isEmpty(members) && members.members[0].roles.includes(constants.roleTypes.MANAGER)) return next(); + + return res.status(401).json({ + status: 'error', + message: 'Unauthorised to perform this action.', + }); +}; + const catchLoginErrorAndRedirect = (req, res, next) => { if (req.auth.err || !req.auth.user) { if (req.auth.err === 'loginError') { @@ -213,4 +225,5 @@ export { getTeams, catchLoginErrorAndRedirect, loginAndSignToken, + userIsTeamManager, }; diff --git a/src/resources/publisher/publisher.controller.js b/src/resources/publisher/publisher.controller.js index b41cf6d2..c4f49d24 100644 --- a/src/resources/publisher/publisher.controller.js +++ b/src/resources/publisher/publisher.controller.js @@ -165,24 +165,6 @@ export default class PublisherController extends Controller { async updateDataRequestModalContent(req, res) { try { - const { _id: requestingUserId } = req.user; - - const team = await TeamModel.findOne({ _id: req.params.id }) - .populate({ - path: 'users', - populate: { - path: 'additionalInfo', - select: 'organisation bio showOrganisation showBio', - }, - }) - .lean(); - - // Check that user is a manager - const authorised = teamController.checkTeamPermissions(constants.roleTypes.MANAGER, team, requestingUserId); - if (!authorised) { - return res.status(401).json({ success: false }); - } - await this.publisherService.updateDataRequestModalContent(req.params.id, req.user.id, req.body.content).then(() => { return res.status(200).json({ success: true }); }); diff --git a/src/resources/publisher/publisher.route.js b/src/resources/publisher/publisher.route.js index 6817ef48..43cbcb99 100644 --- a/src/resources/publisher/publisher.route.js +++ b/src/resources/publisher/publisher.route.js @@ -4,6 +4,7 @@ import passport from 'passport'; import { logger } from '../utilities/logger'; import PublisherController from './publisher.controller'; import { publisherService, workflowService, dataRequestService, amendmentService } from './dependency'; +import { utils } from '../auth'; const logCategory = 'Publisher'; const publisherController = new PublisherController(publisherService, workflowService, dataRequestService, amendmentService); @@ -54,7 +55,7 @@ router.get( (req, res) => publisherController.getPublisherWorkflows(req, res) ); -router.patch('/dataRequestModalContent/:id', passport.authenticate('jwt'), (req, res) => +router.patch('/dataRequestModalContent/:id', passport.authenticate('jwt'), utils.userIsTeamManager(), (req, res) => publisherController.updateDataRequestModalContent(req, res) ); From c54a95173b909ac6aa2985a5ceff9f1dee4031f6 Mon Sep 17 00:00:00 2001 From: Richard Date: Fri, 3 Dec 2021 15:03:47 +0000 Subject: [PATCH 13/67] Removing unused import --- src/resources/publisher/publisher.controller.js | 2 -- 1 file changed, 2 deletions(-) diff --git a/src/resources/publisher/publisher.controller.js b/src/resources/publisher/publisher.controller.js index c4f49d24..b124b197 100644 --- a/src/resources/publisher/publisher.controller.js +++ b/src/resources/publisher/publisher.controller.js @@ -1,10 +1,8 @@ import _ from 'lodash'; - import constants from '../utilities/constants.util'; import teamController from '../team/team.controller'; import Controller from '../base/controller'; import { logger } from '../utilities/logger'; -import { TeamModel } from '../team/team.model'; const logCategory = 'Publisher'; From 1d70eba2059e958314bebd0fd0cc0b17ed2d74c0 Mon Sep 17 00:00:00 2001 From: massimocianfroccaPA Date: Wed, 8 Dec 2021 11:43:23 +0000 Subject: [PATCH 14/67] add post API for question bank --- .../__tests__/questionbank.service.test.js | 16 ++++++ .../questionbank/questionbank.controller.js | 16 ++++++ .../questionbank/questionbank.route.js | 49 +++++++++++++++++-- .../questionbank/questionbank.service.js | 24 +++++++++ 4 files changed, 102 insertions(+), 3 deletions(-) diff --git a/src/resources/questionbank/__tests__/questionbank.service.test.js b/src/resources/questionbank/__tests__/questionbank.service.test.js index d3e7c0aa..5ce9d613 100644 --- a/src/resources/questionbank/__tests__/questionbank.service.test.js +++ b/src/resources/questionbank/__tests__/questionbank.service.test.js @@ -87,3 +87,19 @@ describe('Question Bank Service', function () { expect(result.masterSchema).toEqual(questionBank.globalDocument.masterSchema); }); }); + +describe('Question Bank Service, schema creation', function () { + // Pull the master schema + // Get the question status and guidance + // Loops through the question sets on master schema + // If question status is off then remove the question + // If question is on check the if guidance is changed and update the guidance + // Remove the extra options that are not needed by the final version of a schema + // Locked question option + // Default question option + // Save final schema as a new version along with question status and guidance objects + // If first time for 5 safes + // Set the flags that are needed for 5 safes to be functional + + it('creation of a new data request schema'); +}); diff --git a/src/resources/questionbank/questionbank.controller.js b/src/resources/questionbank/questionbank.controller.js index 44b4f152..9ae455b2 100644 --- a/src/resources/questionbank/questionbank.controller.js +++ b/src/resources/questionbank/questionbank.controller.js @@ -49,4 +49,20 @@ export default class QuestionbankController extends Controller { }); } } + + async publishSchema(req, res) { + try { + const { questionStatus, guidance, dataRequestSchema } = req.body; + + const newRequestSchema = this.questionbankService.publishSchema({ questionStatus, guidance, dataRequestSchema }); + + return res.status(200).json({ success: true, result: newRequestSchema }); + } catch (err) { + logger.logError(err, logCategory); + return res.status(500).json({ + success: false, + message: 'A server error occurred, please try again', + }); + } + } } diff --git a/src/resources/questionbank/questionbank.route.js b/src/resources/questionbank/questionbank.route.js index 55632d64..421bb034 100644 --- a/src/resources/questionbank/questionbank.route.js +++ b/src/resources/questionbank/questionbank.route.js @@ -1,8 +1,9 @@ import express from 'express'; import passport from 'passport'; -import { isUndefined, isNull } from 'lodash'; +import { isUndefined, isNull, isEmpty } from 'lodash'; import QuestionbankController from './questionbank.controller'; import { questionbankService } from './dependency'; +import { datarequestschemaService } from './../datarequest/schema/dependency'; import { logger } from '../utilities/logger'; const router = express.Router(); @@ -22,7 +23,7 @@ const validateViewRequest = (req, res, next) => { next(); }; -const authorizeView = (req, res, next) => { +const authorizeViewRequest = (req, res, next) => { const requestingUser = req.user; const { publisherId } = req.params; @@ -38,6 +39,41 @@ const authorizeView = (req, res, next) => { next(); }; +const validatePostRequest = (req, res, next) => { + const { schemaId } = req.params; + + if (isUndefined(schemaId)) return res.status(400).json({ success: false, message: 'You must provide a valid data request schema Id' }); + + next(); +}; + +const authorizePostRequest = async (req, res, next) => { + const requestingUser = req.user; + const { id } = req.params; + + const datarequestschema = await datarequestschemaService.getDatarequestschemaById(id); + + if (isEmpty(datarequestschema)) { + return res.status(404).json({ + success: false, + message: 'The requested data request schema could not be found', + }); + } + + const authorised = isUserMemberOfTeam(requestingUser, datarequestschema.publisher); + + if (!authorised) { + return res.status(401).json({ + success: false, + message: 'You are not authorised to perform this action', + }); + } + + req.body.datarequestschema = datarequestschema; + + next(); +}; + // @route GET /api/v1/questionbanks/publisherId // @desc Returns questionbank info belonging to the publisher // @access Public @@ -45,7 +81,7 @@ router.get( '/:publisherId', passport.authenticate('jwt'), validateViewRequest, - authorizeView, + authorizeViewRequest, logger.logRequestMiddleware({ logCategory, action: 'Viewed questionbank data' }), (req, res) => questionbankController.getQuestionbank(req, res) ); @@ -57,4 +93,11 @@ router.get('/', logger.logRequestMiddleware({ logCategory, action: 'Viewed quest questionbankController.getQuestionbanks(req, res) ); +// @route POST /api/v1/questionbanks +// @desc Activate a draft schema creating a jsonSchema from masterSchema +// @access Public +router.post('/schemaId', passport.authenticate('jwt'), validatePostRequest, authorizePostRequest, (req, res) => + questionbankController.publishSchema(req, res) +); + module.exports = router; diff --git a/src/resources/questionbank/questionbank.service.js b/src/resources/questionbank/questionbank.service.js index b5901b92..f1595028 100644 --- a/src/resources/questionbank/questionbank.service.js +++ b/src/resources/questionbank/questionbank.service.js @@ -120,6 +120,30 @@ export default class QuestionbankService { } } + async publishSchema(schema) { + const global = await this.globalService.getGlobal({ localeId: 'en-gb' }); + const masterSchema = global.masterSchema; + const { guidance, questionStatus } = schema; + + masterSchema.questionSets.forEach((questionSet, questionSetIndex) => { + questionSet.questions.forEach((question, questionIndex) => { + if (questionStatus[question.questionId] === 0) { + delete masterSchema.questionSets[questionSetIndex].questions[questionIndex]; + } else { + if (has(guidance, question.questionId)) question.guidance = guidance[question.questionId]; + delete masterSchema.questionSets[questionSetIndex].questions[questionIndex].lockedQuestion; + delete masterSchema.questionSets[questionSetIndex].questions[questionIndex].defaultQuestion; + } + }); + }); + + const jsonSchema = masterSchema; + + const publishedSchema = await this.dataRequestRepository.updateApplicationFormSchemaById(schema._id, { jsonSchema }); + + return publishedSchema; + } + addQuestionsFromPublisherSchema(publisherSchema, questionStatus) { const jsonSchema = publisherSchema.jsonSchema; jsonSchema.questionSets.forEach(questionSet => { From b5cc803566ff4c6fd8d3084385ab926a90ac28eb Mon Sep 17 00:00:00 2001 From: massimocianfroccaPA Date: Thu, 9 Dec 2021 10:03:36 +0000 Subject: [PATCH 15/67] Add flags settings on publisher and datasets --- src/resources/dataset/dataset.repository.js | 5 +++++ src/resources/dataset/v1/dataset.service.js | 4 ++++ src/resources/publisher/publisher.service.js | 4 ++++ src/resources/questionbank/dependency.js | 3 ++- .../questionbank/questionbank.service.js | 16 +++++++++++++++- 5 files changed, 30 insertions(+), 2 deletions(-) diff --git a/src/resources/dataset/dataset.repository.js b/src/resources/dataset/dataset.repository.js index 44f01a3d..45355bec 100644 --- a/src/resources/dataset/dataset.repository.js +++ b/src/resources/dataset/dataset.repository.js @@ -34,4 +34,9 @@ export default class DatasetRepository extends Repository { return obj; }, {}); } + + async updateMany(query, data) { + this.dataset.updateMany(query, data); + //ToolModel.updateMany({ 'datasetfields.publisher': 'ALLIANCE > NHS DIGITAL' }, { $set: { is5Safes: false } }) + } } diff --git a/src/resources/dataset/v1/dataset.service.js b/src/resources/dataset/v1/dataset.service.js index de60f40b..245f2848 100644 --- a/src/resources/dataset/v1/dataset.service.js +++ b/src/resources/dataset/v1/dataset.service.js @@ -938,6 +938,10 @@ function populateV2datasetObject(v2Data) { return datasetv2Object; } +export async function updateMany(query, data) { + return await Data.updateMany(query, data); +} + function checkForArray(value) { if (typeof value !== 'string') return value; try { diff --git a/src/resources/publisher/publisher.service.js b/src/resources/publisher/publisher.service.js index c503938b..63c558d0 100644 --- a/src/resources/publisher/publisher.service.js +++ b/src/resources/publisher/publisher.service.js @@ -94,4 +94,8 @@ export default class PublisherService { return filteredApplications; } + + async update(document, body = {}) { + return this.publisherRepository.update(document, body); + } } diff --git a/src/resources/questionbank/dependency.js b/src/resources/questionbank/dependency.js index 963889ac..109f3ed9 100644 --- a/src/resources/questionbank/dependency.js +++ b/src/resources/questionbank/dependency.js @@ -1,7 +1,8 @@ import QuestionbankService from './questionbank.service'; import { publisherService } from '../publisher/dependency'; import { globalService } from '../global/dependency'; +import { datasetService } from '../dataset/dependency'; import DataRequestRepository from '../datarequest/datarequest.repository'; export const dataRequestRepository = new DataRequestRepository(); -export const questionbankService = new QuestionbankService(publisherService, globalService, dataRequestRepository); +export const questionbankService = new QuestionbankService(publisherService, globalService, dataRequestRepository, datasetService); diff --git a/src/resources/questionbank/questionbank.service.js b/src/resources/questionbank/questionbank.service.js index f1595028..45a876ee 100644 --- a/src/resources/questionbank/questionbank.service.js +++ b/src/resources/questionbank/questionbank.service.js @@ -1,10 +1,11 @@ import { isEmpty, has } from 'lodash'; export default class QuestionbankService { - constructor(publisherService, globalService, dataRequestRepository) { + constructor(publisherService, globalService, dataRequestRepository, datasetService) { this.publisherService = publisherService; this.globalService = globalService; this.dataRequestRepository = dataRequestRepository; + this.datasetService = datasetService; } async getQuestionBankInfo(publisherId) { @@ -141,6 +142,19 @@ export default class QuestionbankService { const publishedSchema = await this.dataRequestRepository.updateApplicationFormSchemaById(schema._id, { jsonSchema }); + //if its not already a 5 safes publisher then set the flags to true on the publisher and also on the datasets + const publisher = await this.publisherService.getPublisher(schema.publisher); + if (!has(publisher, 'uses5Safes')) { + await this.publisherService.update(publisher._id, { + allowsMessaging: true, + workflowEnabled: true, + allowAccessRequestManagement: true, + uses5Safes: true, + }); + + await this.datasetService.updateMany({ 'datasetfields.publisher': schema.publisher }, { is5Safes: false }); + } + return publishedSchema; } From 97de86645cea49eb7e3c051b13fa9a9d4b07b0b8 Mon Sep 17 00:00:00 2001 From: massimocianfroccaPA Date: Thu, 9 Dec 2021 16:32:04 +0000 Subject: [PATCH 16/67] fix jsonSchema generation --- .../schema/datarequest.schemas.route.js | 3 ++ src/resources/dataset/dataset.repository.js | 3 +- src/resources/dataset/dataset.service.js | 6 +++- src/resources/dataset/v1/dataset.service.js | 4 --- .../questionbank/questionbank.controller.js | 4 +-- .../questionbank/questionbank.route.js | 28 +++++++++---------- .../questionbank/questionbank.service.js | 20 +++++++------ 7 files changed, 36 insertions(+), 32 deletions(-) diff --git a/src/resources/datarequest/schema/datarequest.schemas.route.js b/src/resources/datarequest/schema/datarequest.schemas.route.js index 3ce198c9..93a35542 100644 --- a/src/resources/datarequest/schema/datarequest.schemas.route.js +++ b/src/resources/datarequest/schema/datarequest.schemas.route.js @@ -80,6 +80,9 @@ router.get('/', passport.authenticate('jwt'), utils.checkIsInRole(ROLES.Admin, R return res.json({ jsonSchema: dataRequestSchema.jsonSchema }); }); +// @router PATCH /api/v1/data-access-request/schema +// @desc patch a data request schema +// @access Private router.patch('/:id', passport.authenticate('jwt'), validateUpdate, authorizeUpdate, (req, res) => datarequestschemaController.updateDatarequestschema(req, res) ); diff --git a/src/resources/dataset/dataset.repository.js b/src/resources/dataset/dataset.repository.js index 45355bec..9adf56a5 100644 --- a/src/resources/dataset/dataset.repository.js +++ b/src/resources/dataset/dataset.repository.js @@ -36,7 +36,6 @@ export default class DatasetRepository extends Repository { } async updateMany(query, data) { - this.dataset.updateMany(query, data); - //ToolModel.updateMany({ 'datasetfields.publisher': 'ALLIANCE > NHS DIGITAL' }, { $set: { is5Safes: false } }) + return this.dataset.updateMany(query, data); } } diff --git a/src/resources/dataset/dataset.service.js b/src/resources/dataset/dataset.service.js index 5bd76087..d52938f6 100644 --- a/src/resources/dataset/dataset.service.js +++ b/src/resources/dataset/dataset.service.js @@ -37,7 +37,7 @@ export default class DatasetService { return dataset; } - async getDatasets(query = {}, options = {} ) { + async getDatasets(query = {}, options = {}) { return this.datasetRepository.getDatasets(query, options); } @@ -110,4 +110,8 @@ export default class DatasetService { }); return dataset; } + + async updateMany(query, data) { + return this.datasetRepository.updateMany(query, data); + } } diff --git a/src/resources/dataset/v1/dataset.service.js b/src/resources/dataset/v1/dataset.service.js index 245f2848..de60f40b 100644 --- a/src/resources/dataset/v1/dataset.service.js +++ b/src/resources/dataset/v1/dataset.service.js @@ -938,10 +938,6 @@ function populateV2datasetObject(v2Data) { return datasetv2Object; } -export async function updateMany(query, data) { - return await Data.updateMany(query, data); -} - function checkForArray(value) { if (typeof value !== 'string') return value; try { diff --git a/src/resources/questionbank/questionbank.controller.js b/src/resources/questionbank/questionbank.controller.js index 9ae455b2..f691d947 100644 --- a/src/resources/questionbank/questionbank.controller.js +++ b/src/resources/questionbank/questionbank.controller.js @@ -52,9 +52,9 @@ export default class QuestionbankController extends Controller { async publishSchema(req, res) { try { - const { questionStatus, guidance, dataRequestSchema } = req.body; + const { dataRequestSchema } = req.body; - const newRequestSchema = this.questionbankService.publishSchema({ questionStatus, guidance, dataRequestSchema }); + const newRequestSchema = await this.questionbankService.publishSchema(dataRequestSchema); return res.status(200).json({ success: true, result: newRequestSchema }); } catch (err) { diff --git a/src/resources/questionbank/questionbank.route.js b/src/resources/questionbank/questionbank.route.js index 421bb034..83edd96b 100644 --- a/src/resources/questionbank/questionbank.route.js +++ b/src/resources/questionbank/questionbank.route.js @@ -10,11 +10,16 @@ const router = express.Router(); const questionbankController = new QuestionbankController(questionbankService); const logCategory = 'questionbank'; -function isUserMemberOfTeam(user, teamId) { +function isUserMemberOfTeamById(user, teamId) { let { teams } = user; return teams.filter(team => !isNull(team.publisher)).some(team => team.publisher._id.equals(teamId)); } +function isUserMemberOfTeamByName(user, publisherName) { + let { teams } = user; + return teams.filter(team => !isNull(team.publisher)).some(team => team.publisher.name === publisherName); +} + const validateViewRequest = (req, res, next) => { const { publisherId } = req.params; @@ -27,7 +32,7 @@ const authorizeViewRequest = (req, res, next) => { const requestingUser = req.user; const { publisherId } = req.params; - const authorised = isUserMemberOfTeam(requestingUser, publisherId); + const authorised = isUserMemberOfTeamById(requestingUser, publisherId); if (!authorised) { return res.status(401).json({ @@ -49,18 +54,18 @@ const validatePostRequest = (req, res, next) => { const authorizePostRequest = async (req, res, next) => { const requestingUser = req.user; - const { id } = req.params; + const { schemaId } = req.params; - const datarequestschema = await datarequestschemaService.getDatarequestschemaById(id); + const dataRequestSchema = await datarequestschemaService.getDatarequestschemaById(schemaId); - if (isEmpty(datarequestschema)) { + if (isEmpty(dataRequestSchema)) { return res.status(404).json({ success: false, message: 'The requested data request schema could not be found', }); } - const authorised = isUserMemberOfTeam(requestingUser, datarequestschema.publisher); + const authorised = isUserMemberOfTeamByName(requestingUser, dataRequestSchema.publisher); if (!authorised) { return res.status(401).json({ @@ -69,7 +74,7 @@ const authorizePostRequest = async (req, res, next) => { }); } - req.body.datarequestschema = datarequestschema; + req.body.dataRequestSchema = dataRequestSchema; next(); }; @@ -86,17 +91,10 @@ router.get( (req, res) => questionbankController.getQuestionbank(req, res) ); -// @route GET /api/v1/questionbanks -// @desc Returns a collection of questionbanks based on supplied query parameters -// @access Public -router.get('/', logger.logRequestMiddleware({ logCategory, action: 'Viewed questionbanks data' }), (req, res) => - questionbankController.getQuestionbanks(req, res) -); - // @route POST /api/v1/questionbanks // @desc Activate a draft schema creating a jsonSchema from masterSchema // @access Public -router.post('/schemaId', passport.authenticate('jwt'), validatePostRequest, authorizePostRequest, (req, res) => +router.post('/:schemaId', passport.authenticate('jwt'), validatePostRequest, authorizePostRequest, (req, res) => questionbankController.publishSchema(req, res) ); diff --git a/src/resources/questionbank/questionbank.service.js b/src/resources/questionbank/questionbank.service.js index 45a876ee..f9e567bb 100644 --- a/src/resources/questionbank/questionbank.service.js +++ b/src/resources/questionbank/questionbank.service.js @@ -127,23 +127,27 @@ export default class QuestionbankService { const { guidance, questionStatus } = schema; masterSchema.questionSets.forEach((questionSet, questionSetIndex) => { - questionSet.questions.forEach((question, questionIndex) => { + let questionsArray = masterSchema.questionSets[questionSetIndex].questions; + questionSet.questions.forEach(question => { if (questionStatus[question.questionId] === 0) { - delete masterSchema.questionSets[questionSetIndex].questions[questionIndex]; + questionsArray = questionsArray.filter(q => q.questionId !== question.questionId); } else { - if (has(guidance, question.questionId)) question.guidance = guidance[question.questionId]; - delete masterSchema.questionSets[questionSetIndex].questions[questionIndex].lockedQuestion; - delete masterSchema.questionSets[questionSetIndex].questions[questionIndex].defaultQuestion; + if (has(guidance, question.questionId)) { + question.guidance = guidance[question.questionId]; + } + delete question.lockedQuestion; + delete question.defaultQuestion; } }); + masterSchema.questionSets[questionSetIndex].questions = questionsArray; }); const jsonSchema = masterSchema; - const publishedSchema = await this.dataRequestRepository.updateApplicationFormSchemaById(schema._id, { jsonSchema }); + const publishedSchema = await this.dataRequestRepository.updateApplicationFormSchemaById(schema._id, { jsonSchema, status: 'active' }); //if its not already a 5 safes publisher then set the flags to true on the publisher and also on the datasets - const publisher = await this.publisherService.getPublisher(schema.publisher); + const publisher = await this.publisherService.getPublisher(schema.publisher, { lean: true }); if (!has(publisher, 'uses5Safes')) { await this.publisherService.update(publisher._id, { allowsMessaging: true, @@ -152,7 +156,7 @@ export default class QuestionbankService { uses5Safes: true, }); - await this.datasetService.updateMany({ 'datasetfields.publisher': schema.publisher }, { is5Safes: false }); + await this.datasetService.updateMany({ 'datasetfields.publisher': schema.publisher }, { is5Safes: true }); } return publishedSchema; From e1a081e4eeb6f533f899b2fa6fcc8167843bd268 Mon Sep 17 00:00:00 2001 From: massimocianfroccaPA Date: Fri, 10 Dec 2021 14:13:36 +0000 Subject: [PATCH 17/67] remove comments --- .../__tests__/questionbank.service.test.js | 16 ---------------- 1 file changed, 16 deletions(-) diff --git a/src/resources/questionbank/__tests__/questionbank.service.test.js b/src/resources/questionbank/__tests__/questionbank.service.test.js index 5ce9d613..d3e7c0aa 100644 --- a/src/resources/questionbank/__tests__/questionbank.service.test.js +++ b/src/resources/questionbank/__tests__/questionbank.service.test.js @@ -87,19 +87,3 @@ describe('Question Bank Service', function () { expect(result.masterSchema).toEqual(questionBank.globalDocument.masterSchema); }); }); - -describe('Question Bank Service, schema creation', function () { - // Pull the master schema - // Get the question status and guidance - // Loops through the question sets on master schema - // If question status is off then remove the question - // If question is on check the if guidance is changed and update the guidance - // Remove the extra options that are not needed by the final version of a schema - // Locked question option - // Default question option - // Save final schema as a new version along with question status and guidance objects - // If first time for 5 safes - // Set the flags that are needed for 5 safes to be functional - - it('creation of a new data request schema'); -}); From b8d3b7d9ef5283b4f9eea16aef3668b3bb32ae49 Mon Sep 17 00:00:00 2001 From: massimocianfroccaPA Date: Fri, 10 Dec 2021 15:29:41 +0000 Subject: [PATCH 18/67] mode utilities function away from route --- src/resources/auth/utils.js | 14 +++++++++++++- src/resources/questionbank/questionbank.route.js | 13 ++----------- 2 files changed, 15 insertions(+), 12 deletions(-) diff --git a/src/resources/auth/utils.js b/src/resources/auth/utils.js index 97cb301b..b8f9f024 100644 --- a/src/resources/auth/utils.js +++ b/src/resources/auth/utils.js @@ -3,7 +3,7 @@ import passport from 'passport'; import jwt from 'jsonwebtoken'; import { to } from 'await-to-js'; import Url from 'url'; -import { isEmpty } from 'lodash'; +import { isEmpty, isNull } from 'lodash'; import queryString from 'query-string'; import { ROLES } from '../user/user.roles'; @@ -202,6 +202,16 @@ const loginAndSignToken = (req, res, next) => { }); }; +function isUserMemberOfTeamById(user, teamId) { + let { teams } = user; + return teams.filter(team => !isNull(team.publisher)).some(team => team.publisher._id.equals(teamId)); +} + +function isUserMemberOfTeamByName(user, publisherName) { + let { teams } = user; + return teams.filter(team => !isNull(team.publisher)).some(team => team.publisher.name === publisherName); +} + export { setup, signToken, @@ -213,4 +223,6 @@ export { getTeams, catchLoginErrorAndRedirect, loginAndSignToken, + isUserMemberOfTeamById, + isUserMemberOfTeamByName, }; diff --git a/src/resources/questionbank/questionbank.route.js b/src/resources/questionbank/questionbank.route.js index 83edd96b..e3a44a3a 100644 --- a/src/resources/questionbank/questionbank.route.js +++ b/src/resources/questionbank/questionbank.route.js @@ -1,25 +1,16 @@ import express from 'express'; import passport from 'passport'; -import { isUndefined, isNull, isEmpty } from 'lodash'; +import { isUndefined, isEmpty } from 'lodash'; import QuestionbankController from './questionbank.controller'; import { questionbankService } from './dependency'; import { datarequestschemaService } from './../datarequest/schema/dependency'; import { logger } from '../utilities/logger'; +import { isUserMemberOfTeamById, isUserMemberOfTeamByName } from '../auth/utils'; const router = express.Router(); const questionbankController = new QuestionbankController(questionbankService); const logCategory = 'questionbank'; -function isUserMemberOfTeamById(user, teamId) { - let { teams } = user; - return teams.filter(team => !isNull(team.publisher)).some(team => team.publisher._id.equals(teamId)); -} - -function isUserMemberOfTeamByName(user, publisherName) { - let { teams } = user; - return teams.filter(team => !isNull(team.publisher)).some(team => team.publisher.name === publisherName); -} - const validateViewRequest = (req, res, next) => { const { publisherId } = req.params; From 32f6489bdcf41329786d05c006c410edb86d885b Mon Sep 17 00:00:00 2001 From: Paul McCafferty <> Date: Mon, 13 Dec 2021 10:24:51 +0000 Subject: [PATCH 19/67] Updates to API --- src/resources/questionbank/questionbank.service.js | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/src/resources/questionbank/questionbank.service.js b/src/resources/questionbank/questionbank.service.js index f9e567bb..41859310 100644 --- a/src/resources/questionbank/questionbank.service.js +++ b/src/resources/questionbank/questionbank.service.js @@ -21,7 +21,8 @@ export default class QuestionbankService { //create the questionStatus from the master schema masterSchema.questionSets.forEach(questionSet => { questionSet.questions.forEach(question => { - questionStatus[question.questionId] = question.defaultQuestion; + if (question.lockedQuestion === 1) questionStatus[question.questionId] = 2; + else questionStatus[question.questionId] = question.defaultQuestion; }); }); @@ -148,7 +149,7 @@ export default class QuestionbankService { //if its not already a 5 safes publisher then set the flags to true on the publisher and also on the datasets const publisher = await this.publisherService.getPublisher(schema.publisher, { lean: true }); - if (!has(publisher, 'uses5Safes')) { + if (!has(publisher, 'uses5Safes') || publisher.uses5Safes === false) { await this.publisherService.update(publisher._id, { allowsMessaging: true, workflowEnabled: true, @@ -178,7 +179,8 @@ export default class QuestionbankService { masterSchema.questionSets.forEach(questionSet => { questionSet.questions.forEach(question => { if (!has(publisherSchema.questionStatus, question.questionId)) { - questionStatus[question.questionId] = question.defaultQuestion; + if (question.lockedQuestion === 1) questionStatus[question.questionId] = 2; + else questionStatus[question.questionId] = question.defaultQuestion; newQuestionsAdded = true; } }); From 8e5a0d8ef107081a4f8d37de123060fa80bee6ed Mon Sep 17 00:00:00 2001 From: Paul McCafferty <> Date: Mon, 13 Dec 2021 21:48:57 +0000 Subject: [PATCH 20/67] Updates to question bank --- src/resources/questionbank/questionbank.controller.js | 2 +- src/resources/questionbank/questionbank.service.js | 7 ++++++- 2 files changed, 7 insertions(+), 2 deletions(-) diff --git a/src/resources/questionbank/questionbank.controller.js b/src/resources/questionbank/questionbank.controller.js index f691d947..cd1033f5 100644 --- a/src/resources/questionbank/questionbank.controller.js +++ b/src/resources/questionbank/questionbank.controller.js @@ -54,7 +54,7 @@ export default class QuestionbankController extends Controller { try { const { dataRequestSchema } = req.body; - const newRequestSchema = await this.questionbankService.publishSchema(dataRequestSchema); + const newRequestSchema = await this.questionbankService.publishSchema(dataRequestSchema, req.user.id); return res.status(200).json({ success: true, result: newRequestSchema }); } catch (err) { diff --git a/src/resources/questionbank/questionbank.service.js b/src/resources/questionbank/questionbank.service.js index 41859310..3e0d7f81 100644 --- a/src/resources/questionbank/questionbank.service.js +++ b/src/resources/questionbank/questionbank.service.js @@ -122,7 +122,7 @@ export default class QuestionbankService { } } - async publishSchema(schema) { + async publishSchema(schema, userId) { const global = await this.globalService.getGlobal({ localeId: 'en-gb' }); const masterSchema = global.masterSchema; const { guidance, questionStatus } = schema; @@ -160,6 +160,11 @@ export default class QuestionbankService { await this.datasetService.updateMany({ 'datasetfields.publisher': schema.publisher }, { is5Safes: true }); } + await this.publisherService.update(publisher._id, { + applicationFormUpdatedOn: Date.now(), + applicationFormUpdatedBy: userId, + }); + return publishedSchema; } From 5e5d5f469bb5cf4e1a1c81240e72c405fa539374 Mon Sep 17 00:00:00 2001 From: Peter Hammans Date: Fri, 8 Apr 2022 14:56:49 +0100 Subject: [PATCH 21/67] Remove yarn lock --- yarn-error.log | 131 - yarn.lock | 9145 ------------------------------------------------ 2 files changed, 9276 deletions(-) delete mode 100644 yarn-error.log delete mode 100644 yarn.lock diff --git a/yarn-error.log b/yarn-error.log deleted file mode 100644 index 4c450bdc..00000000 --- a/yarn-error.log +++ /dev/null @@ -1,131 +0,0 @@ -Arguments: - C:\Program Files\nodejs\node.exe C:\Users\Peter\AppData\Roaming\npm\node_modules\yarn\bin\yarn.js - -PATH: - C:\Program Files\Git\mingw64\bin;C:\Program Files\Git\usr\bin;C:\Users\Peter\bin;C:\Program Files\Google\Chrome\Application;C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;C:\Windows\System32\WindowsPowerShell\v1.0;C:\Windows\System32\OpenSSH;C:\Program Files (x86)\NVIDIA Corporation\PhysX\Common;C:\Program Files\NVIDIA Corporation\NVIDIA NvDLISR;C:\Program Files\Git\cmd;C:\Program Files\nodejs;C:\Program Files\Amazon\AWSCLIV2;C:\windows\system32;C:\windows;C:\windows\System32\Wbem;C:\windows\System32\WindowsPowerShell\v1.0;C:\windows\System32\OpenSSH;C:\Program Files\Docker\Docker\resources\bin;C:\ProgramData\DockerDesktop\version-bin;C:\Program Files\dotnet;C:\Users\Peter\AppData\Local\Microsoft\WindowsApps;C:\Users\Peter\AppData\Local\Programs\Microsoft VS Code\bin;C:\Users\Peter\AppData\Roaming\npm - -Yarn version: - 1.22.10 - -Node version: - 12.18.4 - -Platform: - win32 x64 - -Trace: - Error: https://affinitywater-633033879498.d.codeartifact.eu-west-1.amazonaws.com/npm/react-core-ui/@google-cloud%2fmonitoring: Unauthenticated: request used expired credentials. 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dependencies: - buffer-crc32 "~0.2.3" - fd-slicer "~1.1.0" - -ylru@^1.2.0: - version "1.2.1" - resolved "https://affinitywater-633033879498.d.codeartifact.eu-west-1.amazonaws.com:443/npm/react-core-ui/ylru/-/ylru-1.2.1.tgz#f576b63341547989c1de7ba288760923b27fe84f" - integrity sha512-faQrqNMzcPCHGVC2aaOINk13K+aaBDUPjGWl0teOXywElLjyVAB6Oe2jj62jHYtwsU49jXhScYbvPENK+6zAvQ== - -yocto-queue@^0.1.0: - version "0.1.0" - resolved "https://affinitywater-633033879498.d.codeartifact.eu-west-1.amazonaws.com:443/npm/react-core-ui/yocto-queue/-/yocto-queue-0.1.0.tgz#0294eb3dee05028d31ee1a5fa2c556a6aaf10a1b" - integrity sha512-rVksvsnNCdJ/ohGc6xgPwyN8eheCxsiLM8mxuE/t/mOVqJewPuO1miLpTHQiRgTKCLexL4MeAFVagts7HmNZ2Q== From c8df3dbfe645e28ad83b221887912471b1479195 Mon Sep 17 00:00:00 2001 From: Peter Hammans Date: Mon, 16 May 2022 15:39:10 +0100 Subject: [PATCH 22/67] Unpublished updates --- .../datarequest/schema/datarequest.schemas.model.js | 6 ++++++ src/resources/questionbank/questionbank.service.js | 7 +++++++ 2 files changed, 13 insertions(+) diff --git a/src/resources/datarequest/schema/datarequest.schemas.model.js b/src/resources/datarequest/schema/datarequest.schemas.model.js index 01bc0d50..4c11c9f8 100644 --- a/src/resources/datarequest/schema/datarequest.schemas.model.js +++ b/src/resources/datarequest/schema/datarequest.schemas.model.js @@ -40,6 +40,12 @@ const DataRequestSchemas = new Schema( type: Number, default: 0, }, + unpublishedGuidance: [ + { + type: String, + default: [], + }, + ], }, { timestamps: true, diff --git a/src/resources/questionbank/questionbank.service.js b/src/resources/questionbank/questionbank.service.js index 3e0d7f81..dc34c7c2 100644 --- a/src/resources/questionbank/questionbank.service.js +++ b/src/resources/questionbank/questionbank.service.js @@ -33,6 +33,7 @@ export default class QuestionbankService { questionStatus, guidance: {}, countOfChanges: 0, + unpublishedGuidance: [], }; const schema = await this.dataRequestRepository.createApplicationFormSchema(newSchema); @@ -43,6 +44,7 @@ export default class QuestionbankService { guidance: schema.guidance, countOfChanges: schema.countOfChanges, schemaId: schema._id, + unpublishedGuidance: schema.unpublishedGuidance, }; } @@ -61,6 +63,7 @@ export default class QuestionbankService { guidance: latestSchemaVersion.guidance, countOfChanges: latestSchemaVersion.countOfChanges, schemaId: latestSchemaVersion._id, + unpublishedGuidance: latestSchemaVersion.unpublishedGuidance, }; } @@ -79,6 +82,7 @@ export default class QuestionbankService { guidance: latestSchemaVersion.guidance, version: latestSchemaVersion.version + 1, countOfChanges: 0, + unpublishedGuidance: [], }; const schema = await this.dataRequestRepository.createApplicationFormSchema(newSchema); @@ -89,6 +93,7 @@ export default class QuestionbankService { guidance: newSchema.guidance, countOfChanges: newSchema.countOfChanges, schemaId: schema._id, + unpublishedGuidance: schema.unpublishedGuidance, }; } else { let questionStatus = {}; @@ -107,6 +112,7 @@ export default class QuestionbankService { guidance: {}, countOfChanges: 0, version: latestSchemaVersion.version + 1, + unpublishedGuidance: [], }; const schema = await this.dataRequestRepository.createApplicationFormSchema(newSchema); @@ -117,6 +123,7 @@ export default class QuestionbankService { guidance: newSchema.guidance, countOfChanges: newSchema.countOfChanges, schemaId: schema._id, + unpublishedGuidance: newSchema.unpublishedGuidance, }; } } From 03aa6d30a412e7907184ae36247367e7d5165e84 Mon Sep 17 00:00:00 2001 From: Peter Hammans Date: Mon, 16 May 2022 15:47:02 +0100 Subject: [PATCH 23/67] Change to schema --- .../datarequest/schema/datarequest.schemas.model.js | 10 ++++------ 1 file changed, 4 insertions(+), 6 deletions(-) diff --git a/src/resources/datarequest/schema/datarequest.schemas.model.js b/src/resources/datarequest/schema/datarequest.schemas.model.js index 4c11c9f8..b3a65f01 100644 --- a/src/resources/datarequest/schema/datarequest.schemas.model.js +++ b/src/resources/datarequest/schema/datarequest.schemas.model.js @@ -40,12 +40,10 @@ const DataRequestSchemas = new Schema( type: Number, default: 0, }, - unpublishedGuidance: [ - { - type: String, - default: [], - }, - ], + unpublishedGuidance: { + type: Array, + default: [], + }, }, { timestamps: true, From 17958fc3baa898cd4b5be3b9fd382bbf7ed0e15f Mon Sep 17 00:00:00 2001 From: Dan Nita Date: Fri, 20 May 2022 12:09:45 +0100 Subject: [PATCH 24/67] add publish pubsub service --- package.json | 3 +- src/services/google/PubSubService.js | 30 ++++++++++++ .../google/__test__/PubSubService.test.js | 47 +++++++++++++++++++ 3 files changed, 79 insertions(+), 1 deletion(-) create mode 100644 src/services/google/PubSubService.js create mode 100644 src/services/google/__test__/PubSubService.test.js diff --git a/package.json b/package.json index 6fcaae1a..592bea93 100644 --- a/package.json +++ b/package.json @@ -10,6 +10,7 @@ "dependencies": { "@google-cloud/bigquery": "^5.9.3", "@google-cloud/monitoring": "^2.1.0", + "@google-cloud/pubsub": "^2.19.4", "@google-cloud/storage": "^5.3.0", "@hubspot/api-client": "^4.1.0", "@sendgrid/mail": "^7.1.0", @@ -49,7 +50,7 @@ "lodash": "^4.17.19", "mailchimp-api-v3": "^1.15.0", "migrate-mongoose": "^4.0.0", - "moment": "^2.27.0", + "moment": "^2.29.3", "mongoose": "^5.12.7", "morgan": "^1.10.0", "multer": "^1.4.2", diff --git a/src/services/google/PubSubService.js b/src/services/google/PubSubService.js new file mode 100644 index 00000000..61bbcfc7 --- /dev/null +++ b/src/services/google/PubSubService.js @@ -0,0 +1,30 @@ +const {PubSub} = require('@google-cloud/pubsub'); + +const pubSubClient = new PubSub({ + projectId: process.env.PUBSUB_PROJECT_ID, +}); + +export const pushMessage = async (topicName, message) => { + + const dataBuffer = Buffer.from(JSON.stringify(message)); + + // try { + // const messageId = pubSubClient + // .topic(topicName) + // .publish({data: dataBuffer}); + // console.log(`Message ${messageId} published.`); + // } catch (error) { + // console.error(error); + // throw new Error(`Received error while publishing a message to PubSub`); + // } + + try { + const messageId = pubSubClient + .topic(topicName) + .publishMessage({data: dataBuffer}); + console.log(`Message ${messageId} published.`); + } catch (error) { + console.error(error); + throw new Error(`Received error while publishing a message to PubSub`); + } +}; \ No newline at end of file diff --git a/src/services/google/__test__/PubSubService.test.js b/src/services/google/__test__/PubSubService.test.js new file mode 100644 index 00000000..3931d751 --- /dev/null +++ b/src/services/google/__test__/PubSubService.test.js @@ -0,0 +1,47 @@ +const sinon = require('sinon'); + +const topicName = 'topic-name'; +import { pushMessage } from '../PubSubService'; + +jest.mock('@google-cloud/pubsub', () => ({ + __esModule: true, + PubSub: jest.fn().mockImplementation(() => ({ + topic: jest.fn(), + publishMessage: jest.fn().mockImplementation(() => { + return { + get: jest.fn(), + publish: jest.fn(), + publishMessage: jest.fn() + }; + }), + })), +})) + +const stubConsole = function () { + sinon.stub(console, 'error'); + sinon.stub(console, 'log'); +}; + +const restoreConsole = function () { + console.log.restore(); + console.error.restore(); +}; + +beforeEach(stubConsole); +afterEach(restoreConsole); + +describe('PubSub', () => { + it(`publish message function was called`, async () => { + const mockFn = jest.fn().mockName("pushMessage"); + mockFn(); // comment me + expect(mockFn).toHaveBeenCalled(); + }); + + it(`publish message failed`, async () => { + const message = { + foo: 'bar', + }; + + expect(async () => await pushMessage(topicName, message)).rejects.toThrow(); + }); +}); \ No newline at end of file From 7a917d397385a61d8afe60c481fada77e432d829 Mon Sep 17 00:00:00 2001 From: Dan Nita Date: Mon, 23 May 2022 13:36:11 +0300 Subject: [PATCH 25/67] json to pubsub --- src/resources/message/message.controller.js | 26 ++++++++++++- .../__tests__/emailGenerator.util.test.js | 38 +++++++++---------- src/services/google/PubSubService.js | 16 +------- .../google/__test__/PubSubService.test.js | 6 +-- 4 files changed, 48 insertions(+), 38 deletions(-) diff --git a/src/resources/message/message.controller.js b/src/resources/message/message.controller.js index 9ef6f337..23b39448 100644 --- a/src/resources/message/message.controller.js +++ b/src/resources/message/message.controller.js @@ -9,6 +9,7 @@ import { Data as ToolModel } from '../tool/data.model'; import constants from '../utilities/constants.util'; import { dataRequestService } from '../datarequest/dependency'; import { activityLogService } from '../activitylog/dependency'; +import { publishMessageToPubSub } from '../../services/google/PubSubService'; const topicController = require('../topic/topic.controller'); @@ -20,10 +21,11 @@ module.exports = { let { messageType = 'message', topic = '', messageDescription, relatedObjectIds, firstMessage } = req.body; let topicObj = {}; let team, publisher, userType; + let tools = {}; // 1. If the message type is 'message' and topic id is empty if (messageType === 'message') { // 2. Find the related object(s) in MongoDb and include team data to update topic recipients in case teams have changed - const tools = await ToolModel.find() + tools = await ToolModel.find() .where('_id') .in(relatedObjectIds) .populate({ @@ -36,7 +38,8 @@ module.exports = { }, }, }); - // 3. Return undefined if no object(s) exists + + // 3. Return undefined if no object(s) exists if (_.isEmpty(tools)) return undefined; // 4. Get recipients for new message @@ -87,6 +90,7 @@ module.exports = { } } } + // 13. Create new message const message = await MessagesModel.create({ messageID: parseInt(Math.random().toString().replace('0.', '')), @@ -99,6 +103,7 @@ module.exports = { readBy: [new mongoose.Types.ObjectId(createdBy)], ...(userType && { userType }), }); + // 14. Return 500 error if message was not successfully created if (!message) return res.status(500).json({ success: false, message: 'Could not save message to database.' }); @@ -178,6 +183,23 @@ module.exports = { false ); } + + // publish the message to PubSub + const pubSubMessage = { + id: "", + publisherInfo: { + id: tools[0].publisher._id, + name: tools[0].publisher.name, + }, + data: { + topicId: topicObj._id, + messageId: message.messageID, + createdDate: message.createdDate, + data: req.body.firstMessage, + + } + }; + publishMessageToPubSub(process.env.PUBSUB_TOPIC_ENQUIRY, pubSubMessage); } // 19. Return successful response with message data const messageObj = message.toObject(); diff --git a/src/resources/utilities/__tests__/emailGenerator.util.test.js b/src/resources/utilities/__tests__/emailGenerator.util.test.js index 1cff0fcf..b80a9a43 100644 --- a/src/resources/utilities/__tests__/emailGenerator.util.test.js +++ b/src/resources/utilities/__tests__/emailGenerator.util.test.js @@ -22,23 +22,23 @@ describe('Email generator utility functions', () => { expect(emailBody.includes('Do not apply these changes directly to the Gateway')).toBe(false); }); }); - describe('_getRecipients', () => { - const mockRecipients = [ - { email: 'test1@test.com' }, - { email: 'test2@test.com' }, - { email: 'test3@test.com' }, - { email: 'test1@test.com' }, - ]; - it('Should remove duplicaties for production', async () => { - const recipients = emailGenerator.getRecipients(mockRecipients, 'production', 'genericemail@test.com'); - expect(recipients.length).toBe(3); - expect(recipients).toEqual([{ email: 'test1@test.com' }, { email: 'test2@test.com' }, { email: 'test3@test.com' }]); - }); - - it('Should replace recipients non production environtment to generic email', async () => { - const recipients = emailGenerator.getRecipients(mockRecipients, undefined, 'genericemail@test.com'); - expect(recipients.length).toBe(1); - expect(recipients).toEqual([{ email: 'genericemail@test.com' }]); - }); - }); + // describe('_getRecipients', () => { + // const mockRecipients = [ + // { email: 'test1@test.com' }, + // { email: 'test2@test.com' }, + // { email: 'test3@test.com' }, + // { email: 'test1@test.com' }, + // ]; + // it('Should remove duplicaties for production', async () => { + // const recipients = emailGenerator.getRecipients(mockRecipients, 'production', 'genericemail@test.com'); + // expect(recipients.length).toBe(3); + // expect(recipients).toEqual([{ email: 'test1@test.com' }, { email: 'test2@test.com' }, { email: 'test3@test.com' }]); + // }); + + // it('Should replace recipients non production environtment to generic email', async () => { + // const recipients = emailGenerator.getRecipients(mockRecipients, undefined, 'genericemail@test.com'); + // expect(recipients.length).toBe(1); + // expect(recipients).toEqual([{ email: 'genericemail@test.com' }]); + // }); + // }); }); diff --git a/src/services/google/PubSubService.js b/src/services/google/PubSubService.js index 61bbcfc7..02459410 100644 --- a/src/services/google/PubSubService.js +++ b/src/services/google/PubSubService.js @@ -4,24 +4,12 @@ const pubSubClient = new PubSub({ projectId: process.env.PUBSUB_PROJECT_ID, }); -export const pushMessage = async (topicName, message) => { +export const publishMessageToPubSub = async (topicName, message) => { const dataBuffer = Buffer.from(JSON.stringify(message)); - // try { - // const messageId = pubSubClient - // .topic(topicName) - // .publish({data: dataBuffer}); - // console.log(`Message ${messageId} published.`); - // } catch (error) { - // console.error(error); - // throw new Error(`Received error while publishing a message to PubSub`); - // } - try { - const messageId = pubSubClient - .topic(topicName) - .publishMessage({data: dataBuffer}); + const messageId = pubSubClient.topic(topicName).publishMessage({data: dataBuffer}); console.log(`Message ${messageId} published.`); } catch (error) { console.error(error); diff --git a/src/services/google/__test__/PubSubService.test.js b/src/services/google/__test__/PubSubService.test.js index 3931d751..a4b820ad 100644 --- a/src/services/google/__test__/PubSubService.test.js +++ b/src/services/google/__test__/PubSubService.test.js @@ -1,7 +1,7 @@ const sinon = require('sinon'); const topicName = 'topic-name'; -import { pushMessage } from '../PubSubService'; +import { publishMessageToPubSub } from '../PubSubService'; jest.mock('@google-cloud/pubsub', () => ({ __esModule: true, @@ -32,7 +32,7 @@ afterEach(restoreConsole); describe('PubSub', () => { it(`publish message function was called`, async () => { - const mockFn = jest.fn().mockName("pushMessage"); + const mockFn = jest.fn().mockName("publishMessageToPubSub"); mockFn(); // comment me expect(mockFn).toHaveBeenCalled(); }); @@ -42,6 +42,6 @@ describe('PubSub', () => { foo: 'bar', }; - expect(async () => await pushMessage(topicName, message)).rejects.toThrow(); + expect(async () => await publishMessageToPubSub(topicName, message)).rejects.toThrow(); }); }); \ No newline at end of file From 3e121848aac513601c041ddba3f249b634fdc024 Mon Sep 17 00:00:00 2001 From: Peter Hammans Date: Tue, 24 May 2022 10:57:33 +0100 Subject: [PATCH 26/67] Initial commit --- .../datarequest/datarequest.controller.js | 184 +++++++++++------- 1 file changed, 119 insertions(+), 65 deletions(-) diff --git a/src/resources/datarequest/datarequest.controller.js b/src/resources/datarequest/datarequest.controller.js index e776dc3e..96f3effe 100644 --- a/src/resources/datarequest/datarequest.controller.js +++ b/src/resources/datarequest/datarequest.controller.js @@ -21,7 +21,15 @@ const logCategory = 'Data Access Request'; const bpmController = require('../bpmnworkflow/bpmnworkflow.controller'); export default class DataRequestController extends Controller { - constructor(dataRequestService, workflowService, amendmentService, topicService, messageService, activityLogService, dataUseRegisterService) { + constructor( + dataRequestService, + workflowService, + amendmentService, + topicService, + messageService, + activityLogService, + dataUseRegisterService + ) { super(dataRequestService); this.dataRequestService = dataRequestService; this.workflowService = workflowService; @@ -29,7 +37,7 @@ export default class DataRequestController extends Controller { this.activityLogService = activityLogService; this.topicService = topicService; this.messageService = messageService; - this.dataUseRegisterService = dataUseRegisterService + this.dataUseRegisterService = dataUseRegisterService; } // ###### APPLICATION CRUD OPERATIONS ####### @@ -329,7 +337,6 @@ export default class DataRequestController extends Controller { //Get additional info to pre populate for user and collaborators (authors) let contributors = await this.dataRequestService.getDarContributors(darId, userId); - // Return payload return res.status(200).json({ success: true, @@ -698,23 +705,22 @@ export default class DataRequestController extends Controller { if (accessRecord.applicationStatus === constants.applicationStatuses.APPROVED) { const dataUseRegister = await this.dataUseRegisterService.createDataUseRegister(requestingUser, accessRecord); - await dataUseRegisterController.createNotifications( - constants.dataUseRegisterNotifications.DATAUSEAPPROVED, - {}, - dataUseRegister - ); + await dataUseRegisterController.createNotifications( + constants.dataUseRegisterNotifications.DATAUSEAPPROVED, + {}, + dataUseRegister + ); await this.activityLogService.logActivity(constants.activityLogEvents.data_access_request.APPLICATION_APPROVED, { accessRequest: accessRecord, user: req.user, }); - } - else if (accessRecord.applicationStatus === constants.applicationStatuses.APPROVEDWITHCONDITIONS) { + } else if (accessRecord.applicationStatus === constants.applicationStatuses.APPROVEDWITHCONDITIONS) { const dataUseRegister = await this.dataUseRegisterService.createDataUseRegister(requestingUser, accessRecord); - await dataUseRegisterController.createNotifications( - constants.dataUseRegisterNotifications.DATAUSEAPPROVED, - {}, - dataUseRegister - ); + await dataUseRegisterController.createNotifications( + constants.dataUseRegisterNotifications.DATAUSEAPPROVED, + {}, + dataUseRegister + ); await this.activityLogService.logActivity( constants.activityLogEvents.data_access_request.APPLICATION_APPROVED_WITH_CONDITIONS, { @@ -2029,7 +2035,9 @@ export default class DataRequestController extends Controller { let statusChangeUserIds = [...custodianManagers, ...stepReviewers].map(user => user.id); await notificationBuilder.triggerNotificationMessage( statusChangeUserIds, - `${appFirstName} ${appLastName}'s Data Access Request for ${projectName || datasetTitles} was ${context.applicationStatus} by ${firstname} ${lastname}`, + `${appFirstName} ${appLastName}'s Data Access Request for ${projectName || datasetTitles} was ${ + context.applicationStatus + } by ${firstname} ${lastname}`, 'data access request', accessRecord._id ); @@ -2046,7 +2054,9 @@ export default class DataRequestController extends Controller { if (!_.isEmpty(authors)) { await notificationBuilder.triggerNotificationMessage( authors.map(author => author.id), - `A Data Access Request you are contributing to for ${projectName || datasetTitles} was ${context.applicationStatus} by ${publisher}`, + `A Data Access Request you are contributing to for ${projectName || datasetTitles} was ${ + context.applicationStatus + } by ${publisher}`, 'data access request', accessRecord._id ); @@ -2089,7 +2099,9 @@ export default class DataRequestController extends Controller { custodianUserIds = custodianManagers.map(user => user.id); await notificationBuilder.triggerNotificationMessage( custodianUserIds, - `A Data Access Request has been submitted to ${publisher} for ${projectName || datasetTitles} by ${appFirstName} ${appLastName}`, + `A Data Access Request has been submitted to ${publisher} for ${ + projectName || datasetTitles + } by ${appFirstName} ${appLastName}`, 'data access request received', accessRecord._id, accessRecord.datasets[0].publisher._id.toString() @@ -2109,7 +2121,9 @@ export default class DataRequestController extends Controller { if (!_.isEmpty(authors)) { await notificationBuilder.triggerNotificationMessage( accessRecord.authors.map(author => author.id), - `A Data Access Request you are contributing to for ${projectName || datasetTitles} was successfully submitted to ${publisher} by ${firstname} ${lastname}`, + `A Data Access Request you are contributing to for ${ + projectName || datasetTitles + } was successfully submitted to ${publisher} by ${firstname} ${lastname}`, 'data access request', accessRecord._id ); @@ -2142,8 +2156,8 @@ export default class DataRequestController extends Controller { options )); // Get the name of the publishers word template - let publisherTemplate = await PublisherModel.findOne({ name: publisher }, { wordTemplate: 1, _id: 0 }).lean(); - let templateName = publisherTemplate.wordTemplate; + let publisherTemplate = await PublisherModel.findOne({ name: publisher }, { wordTemplate: 1, _id: 0 }).lean(); + let templateName = publisherTemplate.wordTemplate; // Send emails to custodian team members who have opted in to email notifications if (emailRecipientType === 'dataCustodian') { emailRecipients = [...custodianManagers]; @@ -2177,7 +2191,9 @@ export default class DataRequestController extends Controller { } // Remove temporary files for word attachment - if (!_.isUndefined(templateName)) { await emailGenerator.deleteWordAttachmentTempFiles() } + if (!_.isUndefined(templateName)) { + await emailGenerator.deleteWordAttachmentTempFiles(); + } } break; case constants.notificationTypes.RESUBMITTED: @@ -2189,7 +2205,9 @@ export default class DataRequestController extends Controller { custodianUserIds = custodianManagers.map(user => user.id); await notificationBuilder.triggerNotificationMessage( custodianUserIds, - `A Data Access Request has been resubmitted with updates to ${publisher} for ${projectName || datasetTitles} by ${appFirstName} ${appLastName}`, + `A Data Access Request has been resubmitted with updates to ${publisher} for ${ + projectName || datasetTitles + } by ${appFirstName} ${appLastName}`, 'data access request', accessRecord._id ); @@ -2208,7 +2226,9 @@ export default class DataRequestController extends Controller { if (!_.isEmpty(authors)) { await notificationBuilder.triggerNotificationMessage( accessRecord.authors.map(author => author.id), - `A Data Access Request you are contributing to for ${projectName || datasetTitles} was successfully resubmitted with updates to ${publisher} by ${firstname} ${lastname}`, + `A Data Access Request you are contributing to for ${ + projectName || datasetTitles + } was successfully resubmitted with updates to ${publisher} by ${firstname} ${lastname}`, 'data access request', accessRecord._id ); @@ -2551,7 +2571,9 @@ export default class DataRequestController extends Controller { if (!_.isEmpty(authors)) { await notificationBuilder.triggerNotificationMessage( authors.map(author => author.id), - `A Data Access Request you contributed to for ${projectName || datasetTitles} has been duplicated into a new form by ${firstname} ${lastname}`, + `A Data Access Request you contributed to for ${ + projectName || datasetTitles + } has been duplicated into a new form by ${firstname} ${lastname}`, 'data access request unlinked', newApplicationId ); @@ -2593,7 +2615,9 @@ export default class DataRequestController extends Controller { if (!_.isEmpty(authors)) { await notificationBuilder.triggerNotificationMessage( authors.map(author => author.id), - `A draft Data Access Request you contributed to for ${projectName || datasetTitles} has been deleted by ${firstname} ${lastname}`, + `A draft Data Access Request you contributed to for ${ + projectName || datasetTitles + } has been deleted by ${firstname} ${lastname}`, 'data access request unlinked', accessRecord._id ); @@ -2744,7 +2768,9 @@ export default class DataRequestController extends Controller { } else if (userType === constants.userTypes.CUSTODIAN) { await notificationBuilder.triggerNotificationMessage( [accessRecord.userId, ...accessRecord.authors.map(author => author.id)], - `There is a new message for the application ${projectName || datasetTitles} from ${user.firstname} ${user.lastname} from ${accessRecord.publisherObj.name}`, + `There is a new message for the application ${projectName || datasetTitles} from ${user.firstname} ${user.lastname} from ${ + accessRecord.publisherObj.name + }`, 'data access message sent', accessRecord._id ); @@ -2817,7 +2843,7 @@ export default class DataRequestController extends Controller { try { const { params: { id }, - query: { messageType, questionId }, + query: { messageType, questionId, panelId }, } = req; const requestingUserId = parseInt(req.user.id); const requestingUserObjectId = req.user._id; @@ -2846,7 +2872,9 @@ export default class DataRequestController extends Controller { return res.status(401).json({ status: 'failure', message: 'Unauthorised' }); } - const topic = await this.topicService.getTopicForDAR(id, questionId, messageType); + const topic = await this.topicService.getTopicForDAR(id, questionId || panelId, messageType); + + console.log('*** TOPIC', topic); let messages = []; if (!_.isEmpty(topic) && !_.isEmpty(topic.topicMessages)) { @@ -2875,25 +2903,30 @@ export default class DataRequestController extends Controller { //POST api/v1/data-access-request/:id/messages async submitMessage(req, res) { + console.log('*** submitting message', req.body); + try { const { params: { id }, } = req; - const { questionId, messageType, messageBody } = req.body; + const { questionId, panel, messageType, messageBody } = req.body; const requestingUserId = parseInt(req.user.id); const requestingUserObjectId = req.user._id; const requestingUser = req.user; + console.log('*** accessRecord'); + let accessRecord = await this.dataRequestService.getApplicationWithTeamById(id, { lean: true }); if (!accessRecord) { return res.status(404).json({ status: 'error', message: 'The application could not be found.' }); } - + console.log('*** permissions'); const { authorised, userType } = datarequestUtil.getUserPermissionsForApplication( accessRecord, requestingUserId, requestingUserObjectId ); + if (!authorised) { return res.status(401).json({ status: 'failure', message: 'Unauthorised' }); } else if ( @@ -2907,13 +2940,15 @@ export default class DataRequestController extends Controller { ) { return res.status(401).json({ status: 'failure', message: 'Unauthorised' }); } - - let topic = await this.topicService.getTopicForDAR(id, questionId, messageType); + console.log('*** topics'); + let topic = await this.topicService.getTopicForDAR(id, questionId || panel.panelId, messageType); if (_.isEmpty(topic)) { - topic = await this.topicService.createTopicForDAR(id, questionId, messageType); + topic = await this.topicService.createTopicForDAR(id, questionId || panel.panelId, messageType); } + console.log('*** creating message', topic); + await this.messageService.createMessageForDAR(messageBody, topic._id, requestingUserObjectId, userType); if (messageType === constants.DARMessageTypes.DARMESSAGE) { @@ -2921,43 +2956,62 @@ export default class DataRequestController extends Controller { foundQuestionSet = {}, foundPage = {}; - for (let questionSet of accessRecord.jsonSchema.questionSets) { - foundQuestion = datarequestUtil.findQuestion(questionSet.questions, questionId); - if (foundQuestion) { - foundQuestionSet = questionSet; - break; + if (questionId) { + for (let questionSet of accessRecord.jsonSchema.questionSets) { + foundQuestion = datarequestUtil.findQuestion(questionSet.questions, questionId); + if (foundQuestion) { + foundQuestionSet = questionSet; + break; + } } - } - - const panel = dynamicForm.findQuestionPanel(foundQuestionSet.questionSetId, accessRecord.jsonSchema.questionPanels); + console.log('*** finding panel'); + const foundPanel = dynamicForm.findQuestionPanel(foundQuestionSet.questionSetId, accessRecord.jsonSchema.questionPanels); - for (let page of accessRecord.jsonSchema.pages) { - if (page.pageId === panel.pageId) { - foundPage = page; - break; + for (let page of accessRecord.jsonSchema.pages) { + if (page.pageId === foundPanel.pageId) { + foundPage = page; + break; + } } - } - const answer = - accessRecord.questionAnswers && accessRecord.questionAnswers[questionId] - ? accessRecord.questionAnswers[questionId] - : 'No answer for this question'; + const answer = + accessRecord.questionAnswers && accessRecord.questionAnswers[questionId] + ? accessRecord.questionAnswers[questionId] + : 'No answer for this question'; - this.createNotifications( - constants.notificationTypes.MESSAGESENT, - { - userType, - messageBody, - questionWithAnswer: { - question: foundQuestion.question, - questionPanel: foundQuestionSet.questionSetHeader, - page: foundPage.title, - answer, + this.createNotifications( + constants.notificationTypes.MESSAGESENT, + { + userType, + messageBody, + questionWithAnswer: { + question: foundQuestion.question, + questionPanel: foundQuestionSet.questionSetHeader, + page: foundPage.title, + answer, + }, }, - }, - accessRecord, - requestingUser - ); + accessRecord, + requestingUser + ); + } else if (panel) { + console.log('*** creating notifications'); + this.createNotifications( + constants.notificationTypes.MESSAGESENT, + { + userType, + messageBody, + questionWithAnswer: { + question: '', + questionPanel: panel.panelId, + page: panel.panelHeader, + answer: '', + }, + }, + accessRecord, + requestingUser + ); + } } this.activityLogService.logActivity( From 169f389b55e2498e0e6a10fb97e659641d25388d Mon Sep 17 00:00:00 2001 From: Dan Nita Date: Tue, 24 May 2022 19:09:05 +0300 Subject: [PATCH 27/67] added publish redis pubsub --- package.json | 1 + src/resources/message/message.controller.js | 35 ++++++++++--------- .../__test__/cachePubSubClient.test.js | 23 ++++++++++++ src/services/cachePubSub/cachePubSubClient.js | 14 ++++++++ 4 files changed, 57 insertions(+), 16 deletions(-) create mode 100644 src/services/cachePubSub/__test__/cachePubSubClient.test.js create mode 100644 src/services/cachePubSub/cachePubSubClient.js diff --git a/package.json b/package.json index 592bea93..45bdd404 100644 --- a/package.json +++ b/package.json @@ -67,6 +67,7 @@ "prettier": "^2.2.1", "query-string": "^6.12.1", "randomstring": "^1.1.5", + "redis": "4.0.0", "simple-gcp-logging": "git+https://github.com/HDRUK/simple-gcp-logging.git#main", "sinon": "^9.2.4", "snyk": "^1.334.0", diff --git a/src/resources/message/message.controller.js b/src/resources/message/message.controller.js index 23b39448..6ae8b314 100644 --- a/src/resources/message/message.controller.js +++ b/src/resources/message/message.controller.js @@ -9,7 +9,7 @@ import { Data as ToolModel } from '../tool/data.model'; import constants from '../utilities/constants.util'; import { dataRequestService } from '../datarequest/dependency'; import { activityLogService } from '../activitylog/dependency'; -import { publishMessageToPubSub } from '../../services/google/PubSubService'; +import { publishMessageToChannel } from '../../services/cachePubSub/cachePubSubClient'; const topicController = require('../topic/topic.controller'); @@ -184,22 +184,25 @@ module.exports = { ); } - // publish the message to PubSub - const pubSubMessage = { - id: "", - publisherInfo: { - id: tools[0].publisher._id, - name: tools[0].publisher.name, - }, - data: { - topicId: topicObj._id, - messageId: message.messageID, - createdDate: message.createdDate, - data: req.body.firstMessage, + // publish the message to Redis PubSub + if (process.env.CACHE_ENABLED) { + const pubSubMessage = { + id: "", + publisherInfo: { + id: tools[0].publisher._id, + name: tools[0].publisher.name, + }, + data: { + topicId: topicObj._id, + messageId: message.messageID, + createdDate: message.createdDate, + data: req.body.firstMessage, + + } + }; + await publishMessageToChannel(process.env.CACHE_CHANNEL, JSON.stringify(pubSubMessage)); + } - } - }; - publishMessageToPubSub(process.env.PUBSUB_TOPIC_ENQUIRY, pubSubMessage); } // 19. Return successful response with message data const messageObj = message.toObject(); diff --git a/src/services/cachePubSub/__test__/cachePubSubClient.test.js b/src/services/cachePubSub/__test__/cachePubSubClient.test.js new file mode 100644 index 00000000..bb0e7332 --- /dev/null +++ b/src/services/cachePubSub/__test__/cachePubSubClient.test.js @@ -0,0 +1,23 @@ +import redis from 'redis'; +import { publishMessageToChannel } from '../cachePubSubClient'; + +jest.mock('redis', () => { + return { + createClient: () => { + return { + createClient: jest.fn(), + connect: jest.fn(), + publish: jest.fn(async () => "123qwe"), + on: jest.fn(() => jest.fn()), + } + } + } +}); + +describe('test redis pubsub client', () => { + it('publish message to channel', async () => { + const channel = 'channel_test'; + const message = 'message_test' + await publishMessageToChannel(channel, message); + }) +}); \ No newline at end of file diff --git a/src/services/cachePubSub/cachePubSubClient.js b/src/services/cachePubSub/cachePubSubClient.js new file mode 100644 index 00000000..615bb322 --- /dev/null +++ b/src/services/cachePubSub/cachePubSubClient.js @@ -0,0 +1,14 @@ +import { createClient } from 'redis'; +const client = createClient({ + url: process.env.CACHE_URL +}); + +export const publishMessageToChannel = async (channel, message) => { + await client.connect(); + + client.on("connect", () => console.log("Redis cache is ready")); + client.on("error", (err) => console.log('Redis Client Error', err)); + client.on('ready', () => console.log('redis is running')); + + await client.publish(channel, message); +} \ No newline at end of file From c520fb741dac4a4f3c415901cb692f016b9a8d11 Mon Sep 17 00:00:00 2001 From: Peter Hammans Date: Wed, 25 May 2022 15:11:46 +0100 Subject: [PATCH 28/67] Remove console log --- .../datarequest/datarequest.controller.js | 15 +++------------ 1 file changed, 3 insertions(+), 12 deletions(-) diff --git a/src/resources/datarequest/datarequest.controller.js b/src/resources/datarequest/datarequest.controller.js index 96f3effe..20e00e5f 100644 --- a/src/resources/datarequest/datarequest.controller.js +++ b/src/resources/datarequest/datarequest.controller.js @@ -2874,8 +2874,6 @@ export default class DataRequestController extends Controller { const topic = await this.topicService.getTopicForDAR(id, questionId || panelId, messageType); - console.log('*** TOPIC', topic); - let messages = []; if (!_.isEmpty(topic) && !_.isEmpty(topic.topicMessages)) { for (let topicMessage of topic.topicMessages.reverse()) { @@ -2903,8 +2901,6 @@ export default class DataRequestController extends Controller { //POST api/v1/data-access-request/:id/messages async submitMessage(req, res) { - console.log('*** submitting message', req.body); - try { const { params: { id }, @@ -2914,13 +2910,11 @@ export default class DataRequestController extends Controller { const requestingUserObjectId = req.user._id; const requestingUser = req.user; - console.log('*** accessRecord'); - let accessRecord = await this.dataRequestService.getApplicationWithTeamById(id, { lean: true }); if (!accessRecord) { return res.status(404).json({ status: 'error', message: 'The application could not be found.' }); } - console.log('*** permissions'); + const { authorised, userType } = datarequestUtil.getUserPermissionsForApplication( accessRecord, requestingUserId, @@ -2940,15 +2934,13 @@ export default class DataRequestController extends Controller { ) { return res.status(401).json({ status: 'failure', message: 'Unauthorised' }); } - console.log('*** topics'); + let topic = await this.topicService.getTopicForDAR(id, questionId || panel.panelId, messageType); if (_.isEmpty(topic)) { topic = await this.topicService.createTopicForDAR(id, questionId || panel.panelId, messageType); } - console.log('*** creating message', topic); - await this.messageService.createMessageForDAR(messageBody, topic._id, requestingUserObjectId, userType); if (messageType === constants.DARMessageTypes.DARMESSAGE) { @@ -2964,7 +2956,7 @@ export default class DataRequestController extends Controller { break; } } - console.log('*** finding panel'); + const foundPanel = dynamicForm.findQuestionPanel(foundQuestionSet.questionSetId, accessRecord.jsonSchema.questionPanels); for (let page of accessRecord.jsonSchema.pages) { @@ -2995,7 +2987,6 @@ export default class DataRequestController extends Controller { requestingUser ); } else if (panel) { - console.log('*** creating notifications'); this.createNotifications( constants.notificationTypes.MESSAGESENT, { From 04987295e4d867ebf57ec31ae3db2061aba3307e Mon Sep 17 00:00:00 2001 From: Dan Nita Date: Wed, 25 May 2022 18:10:00 +0300 Subject: [PATCH 29/67] update redis pubsub --- src/resources/message/message.controller.js | 10 +++++++--- src/services/google/PubSubService.js | 5 +++++ 2 files changed, 12 insertions(+), 3 deletions(-) diff --git a/src/resources/message/message.controller.js b/src/resources/message/message.controller.js index 6ae8b314..1876fd2f 100644 --- a/src/resources/message/message.controller.js +++ b/src/resources/message/message.controller.js @@ -10,8 +10,10 @@ import constants from '../utilities/constants.util'; import { dataRequestService } from '../datarequest/dependency'; import { activityLogService } from '../activitylog/dependency'; import { publishMessageToChannel } from '../../services/cachePubSub/cachePubSubClient'; +import { PublisherModel } from '../publisher/publisher.model'; const topicController = require('../topic/topic.controller'); +const { ObjectId } = require('mongodb'); module.exports = { // POST /api/v1/messages @@ -185,12 +187,14 @@ module.exports = { } // publish the message to Redis PubSub - if (process.env.CACHE_ENABLED) { + let publisherDetails = await PublisherModel.findOne({ _id: ObjectId(tools[0].publisher._id) }).lean(); + + if (publisherDetails['dar-integration']['enabled']) { const pubSubMessage = { id: "", publisherInfo: { - id: tools[0].publisher._id, - name: tools[0].publisher.name, + id: publisherDetails._id, + name: publisherDetails.name, }, data: { topicId: topicObj._id, diff --git a/src/services/google/PubSubService.js b/src/services/google/PubSubService.js index 02459410..9cd4789f 100644 --- a/src/services/google/PubSubService.js +++ b/src/services/google/PubSubService.js @@ -1,3 +1,8 @@ +// example params in .env file: +// PUBSUB_PROJECT_ID='hdruk-gateway-dev' +// PUBSUB_TOPIC_ENQUIRY='enquiry' +// PUBSUB_SUBSCRIPTION_ID='enquiry-sub' + const {PubSub} = require('@google-cloud/pubsub'); const pubSubClient = new PubSub({ From df2c9fe84bfc5cc4f8df41c51d74ef3d82b1f491 Mon Sep 17 00:00:00 2001 From: Callum Reekie Date: Fri, 27 May 2022 08:14:24 +0100 Subject: [PATCH 30/67] question bank updates clearing --- .../questionbank/questionbank.controller.js | 22 +++++ .../questionbank/questionbank.route.js | 7 ++ .../questionbank/questionbank.service.js | 86 +++++++++++++++++-- 3 files changed, 107 insertions(+), 8 deletions(-) diff --git a/src/resources/questionbank/questionbank.controller.js b/src/resources/questionbank/questionbank.controller.js index cd1033f5..27ce2746 100644 --- a/src/resources/questionbank/questionbank.controller.js +++ b/src/resources/questionbank/questionbank.controller.js @@ -65,4 +65,26 @@ export default class QuestionbankController extends Controller { }); } } + + async revertChanges(req, res) { + try { + const { publisherId } = req.params; + const { questionSet } = req.query; + + let target; + if (questionSet) { + target = questionSet; + } + + await this.questionbankService.revertChanges(publisherId, target); + + return res.status(200).json({ success: true }); + } catch (err) { + logger.logError(err, logCategory); + return res.status(500).json({ + success: false, + message: 'Error removing the schema updates, please try again', + }); + } + } } diff --git a/src/resources/questionbank/questionbank.route.js b/src/resources/questionbank/questionbank.route.js index e3a44a3a..b9531b1d 100644 --- a/src/resources/questionbank/questionbank.route.js +++ b/src/resources/questionbank/questionbank.route.js @@ -89,4 +89,11 @@ router.post('/:schemaId', passport.authenticate('jwt'), validatePostRequest, aut questionbankController.publishSchema(req, res) ); +// @route PATCH /api/v2/questionbank/publisherId +// @desc Revert the draft schema to the previous version +// @access Public +router.patch('/:publisherId', passport.authenticate('jwt'), validateViewRequest, authorizeViewRequest, (req, res) => + questionbankController.revertChanges(req, res) +); + module.exports = router; diff --git a/src/resources/questionbank/questionbank.service.js b/src/resources/questionbank/questionbank.service.js index dc34c7c2..1e8283af 100644 --- a/src/resources/questionbank/questionbank.service.js +++ b/src/resources/questionbank/questionbank.service.js @@ -16,15 +16,8 @@ export default class QuestionbankService { let dataRequestSchemas = await this.dataRequestRepository.getApplicationFormSchemas(publisher); if (isEmpty(dataRequestSchemas)) { - let questionStatus = {}; - //create the questionStatus from the master schema - masterSchema.questionSets.forEach(questionSet => { - questionSet.questions.forEach(question => { - if (question.lockedQuestion === 1) questionStatus[question.questionId] = 2; - else questionStatus[question.questionId] = question.defaultQuestion; - }); - }); + let questionStatus = await this.getDefaultQuestionStates(); const newSchema = { publisher: publisher.name, @@ -200,4 +193,81 @@ export default class QuestionbankService { return newQuestionsAdded; } + + async revertChanges(publisherId, target) { + const publisher = await this.publisherService.getPublisher(publisherId); + const dataRequestSchemas = await this.dataRequestRepository.getApplicationFormSchemas(publisher); + + if (dataRequestSchemas.length === 0) { + throw new Error('This publisher has no data request schemas'); + } + + // Default previous state is the master schema + let previousState = await this.getDefaultQuestionStates(); + + let guidance = {}; + let unpublishedGuidance = []; + // Is previous version exists, previousState is last schema version + if (dataRequestSchemas.length > 1) { + previousState = dataRequestSchemas[1].questionStatus; + guidance = dataRequestSchemas[1].guidance || {}; + } + + // Revert updates for a given question panel ELSE revert all updates + if (target) { + const panelQuestions = await this.getPanelQuestions(target); + const updates = Object.keys(previousState).filter(key => !panelQuestions.includes(key)); + + updates.forEach(key => { + previousState[key] = dataRequestSchemas[0].questionStatus[key]; + + if (dataRequestSchemas[0].unpublishedGuidance.includes(key)) { + unpublishedGuidance.push(key); + } + + if (Object.keys(dataRequestSchemas[0].guidance).includes(key)) { + guidance[key] = dataRequestSchemas[0].guidance[key]; + } + }); + } + + await this.dataRequestRepository.updateApplicationFormSchemaById(dataRequestSchemas[0]._id, { + questionStatus: previousState, + unpublishedGuidance, + guidance, + }); + + return; + } + + async getDefaultQuestionStates() { + const global = await this.globalService.getGlobal({ localeId: 'en-gb' }); + const masterSchema = global.masterSchema; + + let defaultQuestionStates = {}; + + masterSchema.questionSets.forEach(questionSet => { + questionSet.questions.forEach(question => { + if (question.lockedQuestion === 1) defaultQuestionStates[question.questionId] = 2; + else defaultQuestionStates[question.questionId] = question.defaultQuestion; + }); + }); + + return defaultQuestionStates; + } + + async getPanelQuestions(target) { + const global = await this.globalService.getGlobal({ localeId: 'en-gb' }); + const questionSets = global.masterSchema.questionSets; + + const panelQuestions = questionSets.filter(questionSet => questionSet.questionSetId === target); + + if (panelQuestions.length === 0) { + throw new Error('This is not a valid questionSetId'); + } + + const questionIds = panelQuestions[0].questions.map(question => question.questionId); + + return questionIds; + } } From cc7f1d0e98be776170b8c0572e595f76835f5818 Mon Sep 17 00:00:00 2001 From: Dan Nita Date: Tue, 31 May 2022 11:50:48 +0300 Subject: [PATCH 31/67] publish message to redis pubsub --- .../datarequest/datarequest.controller.js | 23 +++++++++++++++++++ src/resources/message/message.controller.js | 1 + .../__tests__/emailGenerator.util.test.js | 19 --------------- 3 files changed, 24 insertions(+), 19 deletions(-) diff --git a/src/resources/datarequest/datarequest.controller.js b/src/resources/datarequest/datarequest.controller.js index 052927c7..661319d8 100644 --- a/src/resources/datarequest/datarequest.controller.js +++ b/src/resources/datarequest/datarequest.controller.js @@ -16,9 +16,11 @@ import { logger } from '../utilities/logger'; import { UserModel } from '../user/user.model'; import { PublisherModel } from '../publisher/publisher.model'; import { dataUseRegisterController } from '../dataUseRegister/dependency'; +import { publishMessageToChannel } from '../../services/cachePubSub/cachePubSubClient'; const logCategory = 'Data Access Request'; const bpmController = require('../bpmnworkflow/bpmnworkflow.controller'); +const { ObjectId } = require('mongodb'); export default class DataRequestController extends Controller { constructor(dataRequestService, workflowService, amendmentService, topicService, messageService, activityLogService, dataUseRegisterService) { @@ -450,6 +452,27 @@ export default class DataRequestController extends Controller { bpmController.postStartPreReview(bpmContext); } + // publish the message to Redis PubSub + let publisherDetails = await PublisherModel.findOne({ _id: ObjectId(accessRecord.publisherObj._id) }).lean(); + + if (accessRecord.applicationStatus === constants.applicationStatuses.SUBMITTED + && publisherDetails['dar-integration']['enabled']) { + const pubSubMessage = { + id: "", + type: "5safes", + publisherInfo: { + id: accessRecord.publisherObj._id, + name: accessRecord.publisherObj.name, + }, + data: { + dataRequestId: accessRecord._id, + createdDate: accessRecord.createdAt, + data: accessRecord.questionAnswers, + } + }; + await publishMessageToChannel(process.env.CACHE_CHANNEL, JSON.stringify(pubSubMessage)); + } + // 11. Return aplication and successful response return res.status(200).json({ status: 'success', data: savedAccessRecord }); } catch (err) { diff --git a/src/resources/message/message.controller.js b/src/resources/message/message.controller.js index 1876fd2f..1a0933c5 100644 --- a/src/resources/message/message.controller.js +++ b/src/resources/message/message.controller.js @@ -192,6 +192,7 @@ module.exports = { if (publisherDetails['dar-integration']['enabled']) { const pubSubMessage = { id: "", + type: "enquiry", publisherInfo: { id: publisherDetails._id, name: publisherDetails.name, diff --git a/src/resources/utilities/__tests__/emailGenerator.util.test.js b/src/resources/utilities/__tests__/emailGenerator.util.test.js index b80a9a43..e8a34ada 100644 --- a/src/resources/utilities/__tests__/emailGenerator.util.test.js +++ b/src/resources/utilities/__tests__/emailGenerator.util.test.js @@ -22,23 +22,4 @@ describe('Email generator utility functions', () => { expect(emailBody.includes('Do not apply these changes directly to the Gateway')).toBe(false); }); }); - // describe('_getRecipients', () => { - // const mockRecipients = [ - // { email: 'test1@test.com' }, - // { email: 'test2@test.com' }, - // { email: 'test3@test.com' }, - // { email: 'test1@test.com' }, - // ]; - // it('Should remove duplicaties for production', async () => { - // const recipients = emailGenerator.getRecipients(mockRecipients, 'production', 'genericemail@test.com'); - // expect(recipients.length).toBe(3); - // expect(recipients).toEqual([{ email: 'test1@test.com' }, { email: 'test2@test.com' }, { email: 'test3@test.com' }]); - // }); - - // it('Should replace recipients non production environtment to generic email', async () => { - // const recipients = emailGenerator.getRecipients(mockRecipients, undefined, 'genericemail@test.com'); - // expect(recipients.length).toBe(1); - // expect(recipients).toEqual([{ email: 'genericemail@test.com' }]); - // }); - // }); }); From fd8b7e00e4082d2f4d1c556607c9d64a29f94d84 Mon Sep 17 00:00:00 2001 From: Callum Reekie Date: Tue, 31 May 2022 10:36:39 +0100 Subject: [PATCH 32/67] questionbank revert changes updates --- .../activeSchemaCreatedThroughForm.js | 24 +- .../activeSchemaNotCreatedThroughForm.js | 24 +- .../questionbank/__mocks__/masterSchema.json | 6570 +++++++++++------ .../questionbank/__mocks__/questionbank.js | 2 +- .../__tests__/questionbank.service.test.js | 241 +- .../questionbank/questionbank.controller.js | 10 +- .../questionbank/questionbank.service.js | 17 +- .../__tests__/getCollaboratorsCohorts.test.js | 35 - 8 files changed, 4593 insertions(+), 2330 deletions(-) delete mode 100644 src/resources/user/__tests__/getCollaboratorsCohorts.test.js diff --git a/src/resources/questionbank/__mocks__/activeSchemaCreatedThroughForm.js b/src/resources/questionbank/__mocks__/activeSchemaCreatedThroughForm.js index ca1cc68c..2ffe4a21 100644 --- a/src/resources/questionbank/__mocks__/activeSchemaCreatedThroughForm.js +++ b/src/resources/questionbank/__mocks__/activeSchemaCreatedThroughForm.js @@ -34,19 +34,19 @@ export const expectedSchema = { 'safeoutputs-dataretention-retaindatadate': 0, safeoutputsdataretentionretaindatadatereason: 1, safeoutputsdataretentionretaindataextensionpermissions: 0, - safepeopleprimaryapplicantfullname: 0, - safepeopleprimaryapplicantjobtitle: 1, - safepeopleprimaryapplicanttelephone: 0, + safepeopleprimaryapplicantfullname: 2, + safepeopleprimaryapplicantjobtitle: 2, + safepeopleprimaryapplicanttelephone: 2, safepeopleprimaryapplicantorcid: 1, - safepeopleprimaryapplicantemail: 0, - safepeopleotherindividualsfullname: 1, - safepeopleotherindividualsjobtitle: 0, - safepeopleotherindividualsorganisation: 0, - safepeopleotherindividualsrole: 0, - safepeopleotherindividualsaccessdata: 1, - safepeopleotherindividualsaccreditedresearcher: 0, - safepeopleotherindividualstraininginformationgovernance: 0, - safepeopleotherindividualsexperience: 1, + safepeopleprimaryapplicantemail: 2, + safepeopleotherindividualsfullname: 2, + safepeopleotherindividualsjobtitle: 2, + safepeopleotherindividualsorganisation: 2, + safepeopleotherindividualsrole: 2, + safepeopleotherindividualsaccessdata: 2, + safepeopleotherindividualsaccreditedresearcher: 2, + safepeopleotherindividualstraininginformationgovernance: 2, + safepeopleotherindividualsexperience: 2, }, guidance: { safedatadataflowdiagramenclosed: 'This is the guidance for safedatadataflowdiagramenclosed', diff --git a/src/resources/questionbank/__mocks__/activeSchemaNotCreatedThroughForm.js b/src/resources/questionbank/__mocks__/activeSchemaNotCreatedThroughForm.js index 244a634b..38756fb9 100644 --- a/src/resources/questionbank/__mocks__/activeSchemaNotCreatedThroughForm.js +++ b/src/resources/questionbank/__mocks__/activeSchemaNotCreatedThroughForm.js @@ -313,19 +313,19 @@ export const expectedSchema = { 'safeoutputs-dataretention-retaindatadate': 1, safeoutputsdataretentionretaindatadatereason: 1, safeoutputsdataretentionretaindataextensionpermissions: 1, - safepeopleprimaryapplicantfullname: 0, - safepeopleprimaryapplicantjobtitle: 1, - safepeopleprimaryapplicanttelephone: 0, + safepeopleprimaryapplicantfullname: 2, + safepeopleprimaryapplicantjobtitle: 2, + safepeopleprimaryapplicanttelephone: 2, safepeopleprimaryapplicantorcid: 1, - safepeopleprimaryapplicantemail: 0, - safepeopleotherindividualsfullname: 1, - safepeopleotherindividualsjobtitle: 0, - safepeopleotherindividualsorganisation: 0, - safepeopleotherindividualsrole: 0, - safepeopleotherindividualsaccessdata: 1, - safepeopleotherindividualsaccreditedresearcher: 0, - safepeopleotherindividualstraininginformationgovernance: 0, - safepeopleotherindividualsexperience: 1, + safepeopleprimaryapplicantemail: 2, + safepeopleotherindividualsfullname: 2, + safepeopleotherindividualsjobtitle: 2, + safepeopleotherindividualsorganisation: 2, + safepeopleotherindividualsrole: 2, + safepeopleotherindividualsaccessdata: 2, + safepeopleotherindividualsaccreditedresearcher: 2, + safepeopleotherindividualstraininginformationgovernance: 2, + safepeopleotherindividualsexperience: 2, }, guidance: {}, countOfChanges: 0, diff --git a/src/resources/questionbank/__mocks__/masterSchema.json b/src/resources/questionbank/__mocks__/masterSchema.json index 25dc5c34..0ba839c0 100644 --- a/src/resources/questionbank/__mocks__/masterSchema.json +++ b/src/resources/questionbank/__mocks__/masterSchema.json @@ -1,2333 +1,4499 @@ { - "_id": { "$oid": "615f1c4be27d54d9fdc494fb" }, + "_id": { + "$oid": "61547b0a76fa2c2e984579c7" + }, "localeId": "en-gb", - "__v": { "$numberInt": "0" }, - "createdAt": { "$date": { "$numberLong": "1633623114800" } }, + "__v": 0, + "createdAt": { + "$date": { + "$numberLong": "1632926473875" + } + }, "entry": { - "name": "dataUtility", - "items": [ - { - "key": "allowable_uses", - "dimension": "Allowable uses", - "category": "Access & Provision", - "definition": "Allowable dataset usages as per the licencing agreement, following ethical and IG approval", - "includeInWizard": true, - "wizardStepTitle": "Allowable uses", - "wizardStepDescription": "Please select the identifier that is most relevant to you (optional)", - "wizardStepOrder": { "$numberInt": "1" }, - "wizardStepType": "radio", - "entries": [ - { - "id": { "$oid": "615f1c4a70e33243450fdf6a" }, - "displayOrder": { "$numberInt": "1" }, - "label": "Academic research", - "impliedValues": ["platinum", "gold", "silver", "bronze"] - }, - { - "id": { "$oid": "615f1c4a70e3320a980fdf6b" }, - "displayOrder": { "$numberInt": "2" }, - "label": "Student / educational project", - "impliedValues": ["platinum", "silver", "gold", "bronze"] - }, - { - "id": { "$oid": "615f1c4a70e332c6150fdf6c" }, - "displayOrder": { "$numberInt": "3" }, - "label": "Charitable or non-profit project", - "impliedValues": ["platinum", "gold", "silver"] - }, - { - "id": { "$oid": "615f1c4a70e33284ae0fdf6d" }, - "displayOrder": { "$numberInt": "4" }, - "label": "Commercial project", - "impliedValues": ["platinum", "gold"] - } - ] + "name": "dataUtility", + "items": [ + { + "key": "allowable_uses", + "dimension": "Allowable uses", + "category": "Access & Provision", + "definition": "Allowable dataset usages as per the licencing agreement, following ethical and IG approval", + "includeInWizard": true, + "wizardStepTitle": "Allowable uses", + "wizardStepDescription": "Please select the identifier that is most relevant to you (optional)", + "wizardStepOrder": 1, + "wizardStepType": "radio", + "entries": [ + { + "id": { + "$oid": "618a8b8ba5c83ec5e940ac87" + }, + "displayOrder": 1, + "label": " Available for specific academic research uses only", + "labelAlias": "Academic research", + "impliedValues": [ + "platinum", + "gold", + "silver", + "bronze" + ] }, { - "key": "time_lag", - "dimension": "Time Lag", - "category": "Access & Provision", - "definition": "Lag between the data being collected and added to the dataset", - "includeInWizard": true, - "wizardStepTitle": "Time lag", - "wizardStepDescription": "What is the maximum acceptable time delay from the data being generated to entering the dataset? (optional)", - "wizardStepOrder": { "$numberInt": "2" }, - "wizardStepType": "radio", - "entries": [ - { - "id": { "$oid": "615f1c4a70e3326b190fdf6e" }, - "displayOrder": { "$numberInt": "1" }, - "definition": "Effectively real-time data", - "label": "Near real-time data", - "impliedValues": ["platinum"] - }, - { - "id": { "$oid": "615f1c4a70e332a2c60fdf6f" }, - "displayOrder": { "$numberInt": "2" }, - "definition": "Approximately 1 week", - "label": "1 week", - "impliedValues": ["platinum", "gold"] - }, - { - "id": { "$oid": "615f1c4a70e33284c10fdf70" }, - "displayOrder": { "$numberInt": "3" }, - "definition": "Approximately 1 month", - "label": "1 month", - "impliedValues": ["platinum", "gold", "silver"] - }, - { - "id": { "$oid": "615f1c4a70e332ed880fdf71" }, - "displayOrder": { "$numberInt": "4" }, - "definition": "Approximately 1 year", - "label": "1 year", - "impliedValues": ["platinum", "gold", "silver", "bronze"] - } - ] + "id": { + "$oid": "618a8b8ba5c83e4ad040ac88" + }, + "displayOrder": 2, + "label": "Available for academic and non-profit (e.g. charity, public sector) uses only", + "labelAlias": "Student / educational project", + "impliedValues": [ + "platinum", + "silver", + "gold", + "bronze" + ] }, { - "key": "timeliness", - "dimension": "Timeliness", - "category": "Access & Provision", - "definition": "Average data access request timeframe", - "entries": [ - { - "id": { "$oid": "615f1c4a70e332284b0fdf72" }, - "displayOrder": { "$numberInt": "1" }, - "definition": "Less than 2 weeks", - "impliedValues": ["platinum"] - }, - { - "id": { "$oid": "615f1c4a70e332f1080fdf73" }, - "displayOrder": { "$numberInt": "2" }, - "definition": "Less than 1 month", - "impliedValues": ["gold", "platinum"] - }, - { - "id": { "$oid": "615f1c4a70e332c9210fdf74" }, - "displayOrder": { "$numberInt": "3" }, - "definition": "Less than 3 months", - "impliedValues": ["silver", "gold", "platinum"] - }, - { - "id": { "$oid": "615f1c4a70e33242ec0fdf75" }, - "displayOrder": { "$numberInt": "4" }, - "definition": "Less than 6 months", - "impliedValues": ["bronze", "silver", "gold", "platinum"] - } - ] + "id": { + "$oid": "618a8b8ba5c83e320040ac89" + }, + "displayOrder": 3, + "label": "Available for limited commercial uses (e.g. relating to a specific domain), in addition to academic and other noncommercial uses", + "labelAlias": "Charitable or non-profit project", + "impliedValues": [ + "platinum", + "gold", + "silver" + ] }, { - "key": "data_quality_management_process", - "dimension": "Data Quality Management Process", - "category": "Technical Quality", - "definition": "The level of maturity of the data quality management processes ", - "entries": [ - { - "id": { "$oid": "615f1c4a70e332ce2f0fdf76" }, - "displayOrder": { "$numberInt": "1" }, - "definition": "Externally verified compliance with the data management plan, e.g. by ISO, CQC, ICO or other body", - "impliedValues": ["platinum"] - }, - { - "id": { "$oid": "615f1c4a70e332d3810fdf77" }, - "displayOrder": { "$numberInt": "2" }, - "definition": "Evidence that the data management plan has been implemented is available", - "impliedValues": ["silver", "platinum"] - }, - { - "id": { "$oid": "615f1c4a70e33261b60fdf78" }, - "displayOrder": { "$numberInt": "3" }, - "definition": "A documented data management plan covering collection, auditing, and management is available for the dataset", - "impliedValues": ["bronze", "silver", "platinum"] - } - ] + "id": { + "$oid": "618a8b8ba5c83e03dc40ac8a" + }, + "displayOrder": 4, + "label": "Available for wider commercial uses (in line with ethical and IG approval), and addition to academic and other non-commercial uses", + "labelAlias": "Commercial project", + "impliedValues": [ + "platinum", + "gold" + ] }, { - "key": "pathway_coverage", - "dimension": "Pathway coverage", - "category": "Coverage", - "definition": "Representation of multi-disciplinary healthcare data", - "entries": [ - { - "id": { "$oid": "615f1c4a70e33200ba0fdf79" }, - "displayOrder": { "$numberInt": "1" }, - "definition": "Contains data across more than two tiers", - "impliedValues": ["platinum"] - }, - { - "id": { "$oid": "615f1c4a70e3320f2b0fdf7a" }, - "displayOrder": { "$numberInt": "2" }, - "definition": "Contains multimodal data or data that is linked across two tiers (e.g. primary and secondary care)", - "impliedValues": ["gold", "platinum"] - }, - { - "id": { "$oid": "615f1c4a70e33277bc0fdf7b" }, - "displayOrder": { "$numberInt": "3" }, - "definition": "Contains data from multiple specialties or services within a single tier of care", - "impliedValues": ["silver", "gold", "platinum"] - }, - { - "id": { "$oid": "615f1c4a70e33236b50fdf7c" }, - "displayOrder": { "$numberInt": "4" }, - "definition": "Contains data from a single speciality or area", - "impliedValues": ["bronze", "silver", "gold", "platinum"] - } - ] + "id": { + "$oid": "618a8b8ba5c83e376040ac8b" + }, + "displayOrder": 5, + "label": "N/A", + "impliedValues": [] + } + ] + }, + { + "key": "time_lag", + "dimension": "Time Lag", + "category": "Access & Provision", + "definition": "Lag between the data being collected and added to the dataset", + "includeInWizard": true, + "wizardStepTitle": "Time lag", + "wizardStepDescription": "What is the maximum acceptable time delay from the data being generated to entering the dataset? (optional)", + "wizardStepOrder": 2, + "wizardStepType": "radio", + "entries": [ + { + "id": { + "$oid": "618a8b8ba5c83e1f6640ac8c" + }, + "displayOrder": 1, + "definition": "Effectively real-time data", + "label": "Near real-time data", + "impliedValues": [ + "platinum" + ] }, { - "key": "length_of_follow_up", - "dimension": "Length of follow up", - "category": "Coverage", - "definition": "Average timeframe in which a patient appears in a dataset (follow up period)", - "wizardStepTitle": "Length of follow up", - "wizardStepDescription": "What is the minimum required time frame for patients appearing in dataset, on average? (optional)", - "includeInWizard": true, - "wizardStepOrder": { "$numberInt": "3" }, - "wizardStepType": "radio", - "entries": [ - { - "id": { "$oid": "615f1c4a70e3327fe00fdf7d" }, - "displayOrder": { "$numberInt": "1" }, - "definition": "Between 1-6 months", - "label": "Between 1-6 months", - "impliedValues": ["platinum", "gold", "silver", "bronze"] - }, - { - "id": { "$oid": "615f1c4a70e33218480fdf7e" }, - "displayOrder": { "$numberInt": "2" }, - "definition": "Between 6-12 months", - "label": "Between 6-12 months", - "impliedValues": ["platinum", "gold", "silver"] - }, - { - "id": { "$oid": "615f1c4a70e33217000fdf7f" }, - "displayOrder": { "$numberInt": "3" }, - "definition": "Between 1-10 years", - "label": "Between 1-10 years", - "impliedValues": ["platinum", "gold"] - }, - { - "id": { "$oid": "615f1c4a70e332fb220fdf80" }, - "displayOrder": { "$numberInt": "4" }, - "definition": "More than 10 years", - "label": "More than 10 years", - "impliedValues": ["platinum"] - } - ] + "id": { + "$oid": "618a8b8ba5c83ebfd540ac8d" + }, + "displayOrder": 2, + "definition": "Approximately 1 week", + "label": "1 week", + "impliedValues": [ + "platinum", + "gold" + ] }, { - "key": "availability_of_additional_documentation_and_support", - "dimension": "Availability of additional documentation and support", - "category": "Data Documentation", - "definition": "Available dataset documentation in addition to the data dictionary", - "entries": [ - { - "id": { "$oid": "615f1c4a70e3326e4a0fdf81" }, - "displayOrder": { "$numberInt": "1" }, - "definition": "As Gold, plus support personnel available to answer questions", - "impliedValues": ["platinum"] - }, - { - "id": { "$oid": "615f1c4a70e33230810fdf82" }, - "displayOrder": { "$numberInt": "2" }, - "definition": "As Silver, plus dataset publication was supported with a journal article explaining the dataset in detail, or dataset training materials", - "impliedValues": ["gold", "platinum"] - }, - { - "id": { "$oid": "615f1c4a70e33231900fdf83" }, - "displayOrder": { "$numberInt": "3" }, - "definition": "Comprehensive ReadMe describing extracting and use of data, Dataset FAQS available, Visual data model provided", - "impliedValues": ["silver", "gold", "platinum"] - }, - { - "id": { "$oid": "615f1c4a70e33206280fdf84" }, - "displayOrder": { "$numberInt": "4" }, - "definition": "Past journal articles demonstrate that knowledge of the data exists", - "impliedValues": ["bronze", "silver", "gold", "platinum"] - } - ] + "id": { + "$oid": "618a8b8ba5c83e795440ac8e" + }, + "displayOrder": 3, + "definition": "Approximately 1 month", + "label": "1 month", + "impliedValues": [ + "platinum", + "gold", + "silver" + ] }, { - "key": "data_model", - "dimension": "Data Model", - "category": "Data Documentation", - "definition": "Availability of clear, documented data model", - "includeInWizard": true, - "wizardStepTitle": "Data model", - "wizardStepDescription": "What data model requirements do you have? (optional)", - "wizardStepOrder": { "$numberInt": "4" }, - "wizardStepType": "radio", - "entries": [ - { - "id": { "$oid": "615f1c4a70e332cd770fdf85" }, - "displayOrder": { "$numberInt": "1" }, - "definition": "Known and accepted data model but some key field un-coded or free text", - "label": "Known and accepted data model, with some key fields uncoded ", - "impliedValues": ["platinum", "gold", "silver", "bronze"] - }, - { - "id": { "$oid": "615f1c4a70e3326ff80fdf86" }, - "displayOrder": { "$numberInt": "2" }, - "definition": "Key fields codified using a local standard", - "label": "Key fields coded using local standard", - "impliedValues": ["platinum", "gold", "silver"] - }, - { - "id": { "$oid": "615f1c4a70e332dffc0fdf87" }, - "displayOrder": { "$numberInt": "3" }, - "definition": "Key fields codified using a national or international standard", - "label": "Key fields coded using national/international standard", - "impliedValues": ["platinum", "gold"] - }, - { - "id": { "$oid": "615f1c4a70e33265420fdf88" }, - "displayOrder": { "$numberInt": "4" }, - "definition": "Data Model conforms to a national standard and key fields codified using a national/international standard", - "label": "Model conforms to national standard and key fields coded to national/internal standard", - "impliedValues": ["platinum"] - } - ] + "id": { + "$oid": "618a8b8ba5c83e5fe840ac8f" + }, + "displayOrder": 4, + "definition": "Approximately 1 year", + "label": "1 year", + "impliedValues": [ + "platinum", + "gold", + "silver", + "bronze" + ] }, { - "key": "data_dictionary", - "dimension": "Data Dictionary", - "category": "Data Documentation", - "definition": "Provided documented data dictionary and terminologies", - "entries": [ - { - "id": { "$oid": "615f1c4a70e3327e410fdf89" }, - "displayOrder": { "$numberInt": "1" }, - "definition": "Dictionary is based on international standards and includes mapping", - "impliedValues": ["platinum"] - }, - { - "id": { "$oid": "615f1c4a70e332c0710fdf8a" }, - "displayOrder": { "$numberInt": "2" }, - "definition": "Dictionary relates to national definitions", - "impliedValues": ["gold", "platinum"] - }, - { - "id": { "$oid": "615f1c4a70e332cf5c0fdf8b" }, - "displayOrder": { "$numberInt": "3" }, - "definition": "Definitions compiled into local data dictionary which is available online", - "impliedValues": ["silver", "gold", "platinum"] - }, - { - "id": { "$oid": "615f1c4a70e33286440fdf8c" }, - "displayOrder": { "$numberInt": "4" }, - "definition": "Data definitions available", - "impliedValues": ["bronze", "silver", "gold", "platinum"] - } - ] + "id": { + "$oid": "618a8b8ba5c83e0f0040ac90" + }, + "displayOrder": 5, + "definition": "N/A", + "label": "N/A", + "impliedValues": [] + } + ] + }, + { + "key": "timeliness", + "dimension": "Timeliness", + "category": "Access & Provision", + "definition": "Average data access request timeframe", + "entries": [ + { + "id": { + "$oid": "618a8b8ba5c83e17fd40ac91" + }, + "displayOrder": 1, + "definition": "Less than 2 weeks", + "impliedValues": [ + "platinum" + ] }, { - "key": "provenance", - "dimension": "Provenance", - "category": "Data Documentation", - "definition": "Clear description of source and history of the dataset, providing a \"transparent data pipeline\"", - "includeInWizard": true, - "wizardStepTitle": "Provenance", - "wizardStepDescription": "To what level of detail do you require the origin of the dataset to be documented? (optional)", - "wizardStepOrder": { "$numberInt": "5" }, - "wizardStepType": "radio", - "entries": [ - { - "id": { "$oid": "615f1c4a70e33250010fdf8d" }, - "displayOrder": { "$numberInt": "1" }, - "definition": "Source of the dataset is documented", - "label": "Dataset source documented", - "impliedValues": ["platinum", "gold", "silver", "bronze"] - }, - { - "id": { "$oid": "615f1c4a70e33244eb0fdf8e" }, - "displayOrder": { "$numberInt": "2" }, - "definition": "Source of the dataset and any transformations, rules and exclusions documented", - "label": "Dataset source, any transformations, rule and exclusions documented", - "impliedValues": ["platinum", "gold", "silver"] - }, - { - "id": { "$oid": "615f1c4a70e33229a80fdf8f" }, - "displayOrder": { "$numberInt": "3" }, - "definition": "All original data items listed, all transformations, rules and exclusion listed and impact of these", - "label": "All original data items, transformations, rules, exclusions and impact listed", - "impliedValues": ["platinum", "gold"] - }, - { - "id": { "$oid": "615f1c4a70e33231780fdf90" }, - "displayOrder": { "$numberInt": "4" }, - "definition": "Ability to view earlier versions, including versions before any transformations have been applied data (in line with deidentification and IG approval) and review the impact of each stage of data cleaning", - "label": "Earlier and 'raw' versions and the impact of each stage of data cleaning", - "impliedValues": ["platinum"] - } - ] + "id": { + "$oid": "618a8b8ba5c83e51db40ac92" + }, + "displayOrder": 2, + "definition": "Less than 1 month", + "impliedValues": [ + "gold" + ] }, { - "includeInWizard": true, - "wizardStepTitle": "Search terms", - "wizardStepDescription": "Please type in any relevant search terms to refine your search (optional)", - "wizardStepOrder": { "$numberInt": "6" }, - "wizardStepType": "search", - "entries": [] - }, - { - "key": "linkages", - "dimension": "Linkages", - "category": "Value & Interest", - "definition": "Ability to link with other datasets", - "entries": [ - { - "id": { "$oid": "615f1c4a70e332ffaf0fdf91" }, - "displayOrder": { "$numberInt": "1" }, - "definition": "Existing linkage with reusable or downstream approvals", - "impliedValues": ["platinum"] - }, - { - "id": { "$oid": "615f1c4a70e3323aca0fdf92" }, - "displayOrder": { "$numberInt": "2" }, - "definition": "List of restrictions on the type of linkages detailed. List of previously successful dataset linkages performed, with navigable links to linked datasets via at DOI/URL", - "impliedValues": ["gold", "platinum"] - }, - { - "id": { "$oid": "615f1c4a70e33237280fdf93" }, - "displayOrder": { "$numberInt": "3" }, - "definition": "Available linkages outlined and/or List of datasets previously successfully linked provided", - "impliedValues": ["silver", "gold", "platinum"] - }, - { - "id": { "$oid": "615f1c4a70e332e92d0fdf94" }, - "displayOrder": { "$numberInt": "4" }, - "definition": "Identifiers to demonstrate ability to link to other datasets", - "impliedValues": ["bronze", "silver", "gold", "platinum"] - } - ] + "id": { + "$oid": "618a8b8ba5c83e3d3d40ac93" + }, + "displayOrder": 3, + "definition": "Less than 3 months", + "impliedValues": [ + "silver" + ] }, { - "key": "data_enrichments", - "dimension": "Data Enrichments", - "category": "Value & Interest", - "definition": "Data sources enriched with annotations, image labels, phenomes, derivations, NLP derived data labels", - "entries": [ - { - "id": { "$oid": "615f1c4a70e33271010fdf95" }, - "displayOrder": { "$numberInt": "1" }, - "definition": "The data include additional derived fields, or enriched data", - "impliedValues": ["platinum"] - }, - { - "id": { "$oid": "615f1c4a70e33264900fdf96" }, - "displayOrder": { "$numberInt": "2" }, - "definition": "The data include additional derived fields, or enriched data used by other available data sources", - "impliedValues": ["gold", "platinum"] - }, - { - "id": { "$oid": "615f1c4a70e33233050fdf97" }, - "displayOrder": { "$numberInt": "3" }, - "definition": "The derived fields or enriched data were generated from, or used by, a peer reviewed algorithm", - "impliedValues": ["silver", "gold", "platinum"] - }, - { - "id": { "$oid": "615f1c4a70e332ea210fdf98" }, - "displayOrder": { "$numberInt": "4" }, - "definition": "The data includes derived fields or enriched data from a national report", - "impliedValues": ["bronze", "silver", "gold", "platinum"] - } - ] + "id": { + "$oid": "618a8b8ba5c83e7ff940ac94" + }, + "displayOrder": 4, + "definition": "Less than 6 months", + "impliedValues": [ + "bronze" + ] } - ] - }, - "languageCode": "en", - "updatedAt": { "$date": { "$numberLong": "1633623114800" } }, - "masterSchema": { - "pages": [ + ] + }, + { + "key": "data_quality_management_process", + "dimension": "Data Quality Management Process", + "category": "Technical Quality", + "definition": "The level of maturity of the data quality management processes ", + "entries": [ + { + "id": { + "$oid": "618a8b8ba5c83e6e6340ac95" + }, + "displayOrder": 1, + "definition": "Externally verified compliance with the data management plan, e.g. by ISO, CQC, ICO or other body", + "impliedValues": [ + "platinum" + ] + }, { - "active": true, - "description": "Who is going to be accessing the data?\n\nSafe People should have the right motivations for accessing research data and understand the legal and ethical considerations when using data that may be sensitive or confidential. Safe People should also have sufficient skills, knowledge and experience to work with the data effectively. Researchers may need to undergo specific training or accreditation before accessing certain data or research environments and demonstrate that they are part of a bona fide research organisation.\n\nThe purpose of this section is to ensure that:\n- details of people who will be accessing the data and the people who are responsible for completing the application are identified\n- any individual or organisation that intends to access the data requested is identified\n- all identified individuals have the necessary accreditation and/or expertise to work with the data effectively.", - "title": "Safe people", - "pageId": "safepeople" + "id": { + "$oid": "618a8b8ba5c83e50b140ac96" + }, + "displayOrder": 2, + "definition": "Evidence that the data management plan has been implemented is available", + "impliedValues": [ + "silver" + ] }, { - "pageId": "safeproject", - "description": "What is the purpose of accessing the data?\n\nSafe projects are those that have a valid research purpose with a defined public benefit. \nFor access to data to be granted the researchers need to demonstrate that their proposal is an appropriate and ethical use of the data, and that it is intended to deliver clear public benefits. The purpose of this section is to ensure that:\n- the project rationale is explained in lay terms\n- the research purpose has a defined public benefit. This can be new knowledge, new treatments, improved pathways of care, new techniques of training staff. \n- how the data requested will be used to achieve the project objectives is articulated.", - "active": false, - "title": "Safe project" + "id": { + "$oid": "618a8b8ba5c83e868e40ac97" + }, + "displayOrder": 3, + "definition": "A documented data management plan covering collection, auditing, and management is available for the dataset", + "impliedValues": [ + "bronze" + ] + } + ] + }, + { + "key": "pathway_coverage", + "dimension": "Pathway coverage", + "category": "Coverage", + "definition": "Representation of multi-disciplinary healthcare data", + "entries": [ + { + "id": { + "$oid": "618a8b8ba5c83e779140ac98" + }, + "displayOrder": 1, + "definition": "Contains data across more than two tiers", + "impliedValues": [ + "platinum" + ] }, { - "pageId": "safedata", - "description": "Safe data ensure that researchers have a clear legal basis for accessing the data and do not inadvertently learn something about the data subjects during the course of their analysis, minimising the risks of re-identification.\nThe minimisation of this risk could be achieved by removing direct identifiers, aggregating values, banding variables, or other statistical techniques that may make re-identification more difficult. Sensitive or confidential data could not be considered to be completely safe because of the residual risk to a data subject’s confidentiality. Hence other limitations on access will need to be applied.\n\nThe purpose of this section is to ensure that: \n- there is a clear legal basis for accessing the requested data\n- the data requested is proportionate to the requirement of the project \n- all data requested is necessary in order to achieve the public benefit declared \n- data subjects cannot be identified by your team by cross-referencing datasets from anywhere else.", - "active": false, - "title": "Safe data" + "id": { + "$oid": "618a8b8ba5c83ed79640ac99" + }, + "displayOrder": 2, + "definition": "Contains multimodal data or data that is linked across two tiers (e.g. primary and secondary care)", + "impliedValues": [ + "gold" + ] }, { - "active": false, - "description": "Safe settings are analytics environments where researchers can access and analyse the requested datasets in a safe and ethical way. Safe settings encompass the physical environment and procedural arrangements such as the supervision and auditing regimes. For safe settings, the likelihood of both deliberate and accidental disclosure needs to be explicitly considered.\n\nThe purpose of this section is to ensure that:\n\n- researchers access requested data in a secure and controlled setting such as a Trusted Research Environment (TRE) that limits the unauthorised use of the data\n- practical controls and appropriate restrictions are in place if researchers access data though non-TRE environment. There may be requirements that data is held on restricted access servers, encrypted and only decrypted at the point of use.", - "title": "Safe settings", - "pageId": "safesettings" + "id": { + "$oid": "618a8b8ba5c83e526340ac9a" + }, + "displayOrder": 3, + "definition": "Contains data from multiple specialties or services within a single tier of care", + "impliedValues": [ + "silver" + ] }, { - "pageId": "safeoutputs", - "description": "Safe outputs ensure that all research outputs cannot be used to identify data subjects. They typically include ‘descriptive statistics’ that have been sufficiently aggregated such that identification is near enough impossible, and modelled outputs which are inherently non-confidential. The purpose of this section is to ensure that:\n\n- controls are in place to minimise risks associated with planned outputs and publications \n- the researchers aim to openly publish their results to enable use, scrutiny and further research.", - "active": false, - "title": "Safe outputs" + "id": { + "$oid": "618a8b8ba5c83ef8ea40ac9b" + }, + "displayOrder": 4, + "definition": "Contains data from a single speciality or area", + "impliedValues": [ + "bronze" + ] } - ], - "formPanels": [ - { "pageId": "safepeople", "index": { "$numberDouble": "1.0" }, "panelId": "primaryapplicant" }, - { "index": { "$numberDouble": "2.0" }, "pageId": "safepeople", "panelId": "safepeople-otherindividuals" }, - { "index": { "$numberDouble": "3.0" }, "pageId": "safeproject", "panelId": "safeproject-aboutthisapplication" }, - { "pageId": "safeproject", "index": { "$numberDouble": "4.0" }, "panelId": "safeproject-projectdetails" }, - { "panelId": "safeproject-funderinformation", "index": { "$numberDouble": "5.0" }, "pageId": "safeproject" }, - { "panelId": "safeproject-sponsorinformation", "pageId": "safeproject", "index": { "$numberDouble": "6.0" } }, - { "panelId": "safeproject-declarationofinterest", "index": { "$numberDouble": "7.0" }, "pageId": "safeproject" }, - { "pageId": "safeproject", "index": { "$numberDouble": "8.0" }, "panelId": "safeproject-intellectualproperty" }, - { "panelId": "safedata-datafields", "pageId": "safedata", "index": { "$numberDouble": "9.0" } }, - { "pageId": "safedata", "index": { "$numberDouble": "10.0" }, "panelId": "safedata-otherdatasetsintentiontolinkdata" }, - { "panelId": "safedata-lawfulbasis", "index": { "$numberDouble": "11.0" }, "pageId": "safedata" }, - { "pageId": "safedata", "index": { "$numberDouble": "12.0" }, "panelId": "safedata-confidentialityavenue" }, - { "pageId": "safedata", "index": { "$numberDouble": "13.0" }, "panelId": "safedata-ethicalapproval" }, - { "index": { "$numberDouble": "14.0" }, "pageId": "safesettings", "panelId": "safesettings-storageandprocessing" }, - { "pageId": "safesettings", "index": { "$numberDouble": "15.0" }, "panelId": "safesettings-dataflow" }, - { "index": { "$numberDouble": "16.0" }, "pageId": "safeoutputs", "panelId": "safeoutputs-outputsdisseminationplans" }, - { "pageId": "safeoutputs", "index": { "$numberDouble": "17.0" }, "panelId": "safeoutputs-retention" } - ], - "questionPanels": [ - { - "questionPanelHeaderText": "TODO: We need a description for this panel", - "pageId": "safepeople", - "navHeader": "Primary applicant", - "panelId": "primaryapplicant", - "panelHeader": "Please list the individuals who will have access to the data requested, or are responsible for helping complete this application form. \n\nThis section should include key contact details for the person who is leading the project; key contact details for the person(s) who (are) leading the project from other organisations. Only one contact from each organisation is needed. \n\nThe 'Primary applicant' is the person filling out the application form and principal contact for the application. This is usually the person with operational responsibility for the proposal. Each application must have details for at least one person.\n\nPlease use the file upload function if you're not able to add all individuals via the form.", - "questionSets": [{ "questionSetId": "primaryapplicant", "index": { "$numberDouble": "1.0" } }] - }, - { - "navHeader": "Other individuals", - "panelHeader": "Please list the individuals who will have access to the data requested, or are responsible for helping complete this application form. \n\nThis section should include key contact details for the person who is leading the project; key contact details for the person(s) who (are) leading the project from other organisations. Only one contact from each organisation is needed. \n\nThe 'Primary applicant' is the person filling out the application form and principal contact for the application. This is usually the person with operational responsibility for the proposal. Each application must have details for at least one person.\n\nPlease use the file upload function if you're not able to add all individuals via the form.", - "panelId": "safepeople-otherindividuals", - "questionSets": [ - { "questionSetId": "safepeople-otherindividuals", "index": { "$numberDouble": "1.0" } }, - { "index": { "$numberDouble": "100.0" }, "questionSetId": "add-safepeople-otherindividuals" } - ], - "questionPanelHeaderText": "TODO: We need a description for this panel", - "pageId": "safepeople" + ] + }, + { + "key": "length_of_follow_up", + "dimension": "Length of follow up", + "category": "Coverage", + "definition": "Average timeframe in which a patient appears in a dataset (follow up period)", + "wizardStepTitle": "Length of follow up", + "wizardStepDescription": "What is the minimum required time frame for patients appearing in dataset, on average? (optional)", + "includeInWizard": true, + "wizardStepOrder": 3, + "wizardStepType": "radio", + "entries": [ + { + "id": { + "$oid": "618a8b8ba5c83ef7fe40ac9c" + }, + "displayOrder": 1, + "definition": "Between 1-6 months", + "label": "Between 1-6 months", + "impliedValues": [ + "platinum", + "gold", + "silver", + "bronze" + ] + }, + { + "id": { + "$oid": "618a8b8ba5c83e7f7d40ac9d" + }, + "displayOrder": 2, + "definition": "Between 6-12 months", + "label": "Between 6-12 months", + "impliedValues": [ + "platinum", + "gold", + "silver" + ] + }, + { + "id": { + "$oid": "618a8b8ba5c83e41b040ac9e" + }, + "displayOrder": 3, + "definition": "Between 1-10 years", + "label": "Between 1-10 years", + "impliedValues": [ + "platinum", + "gold" + ] + }, + { + "id": { + "$oid": "618a8b8ba5c83ea2d940ac9f" + }, + "displayOrder": 4, + "definition": "More than 10 years", + "label": "More than 10 years", + "impliedValues": [ + "platinum" + ] }, { - "questionPanelHeaderText": "TODO: We need a description for this panel", - "pageId": "safeproject", - "navHeader": "About this application", - "panelHeader": "", - "panelId": "safeproject-aboutthisapplication", - "questionSets": [{ "index": { "$numberDouble": "1.0" }, "questionSetId": "safeproject-aboutthisapplication" }] + "id": { + "$oid": "618a8b8ba5c83e56da40aca0" + }, + "displayOrder": 5, + "definition": "N/A", + "label": "N/A", + "impliedValues": [] + } + ] + }, + { + "key": "availability_of_additional_documentation_and_support", + "dimension": "Availability of additional documentation and support", + "category": "Data Documentation", + "definition": "Available dataset documentation in addition to the data dictionary", + "entries": [ + { + "id": { + "$oid": "618a8b8ba5c83e06f540aca1" + }, + "displayOrder": 1, + "definition": "As Gold, plus support personnel available to answer questions", + "impliedValues": [ + "platinum" + ] }, { - "questionSets": [{ "questionSetId": "safeproject-projectdetails", "index": { "$numberDouble": "1.0" } }], - "panelHeader": "", - "panelId": "safeproject-projectdetails", - "navHeader": "Project details", - "pageId": "safeproject", - "questionPanelHeaderText": "TODO: We need a description for this panel" + "id": { + "$oid": "618a8b8ba5c83eb2e940aca2" + }, + "displayOrder": 2, + "definition": "As Silver, plus dataset publication was supported with a journal article explaining the dataset in detail, or dataset training materials", + "impliedValues": [ + "gold" + ] }, { - "questionSets": [{ "index": { "$numberDouble": "1.0" }, "questionSetId": "safeproject-funderinformation" }], - "panelHeader": "A funder is the organisation or body providing the financial resource to make the project possible, and may be different to the organisation detailed in the Safe people section. Please provide details of the main funder organisations supporting this project.\n\nPlease use the file upload function if you're not able to add all funders via the form.", - "panelId": "safeproject-funderinformation", - "navHeader": "Funder information", - "pageId": "safeproject", - "questionPanelHeaderText": "TODO: We need a description for this panel" + "id": { + "$oid": "618a8b8ba5c83e7f2940aca3" + }, + "displayOrder": 3, + "definition": "Comprehensive ReadMe describing extracting and use of data, Dataset FAQS available, Visual data model provided", + "impliedValues": [ + "silver" + ] }, { - "navHeader": "Sponsor information", - "questionSets": [{ "questionSetId": "safeproject-sponsorinformation", "index": { "$numberDouble": "1.0" } }], - "panelId": "safeproject-sponsorinformation", - "panelHeader": "Please use the file upload function if you're not able to add all sponsors via the form.", - "pageId": "safeproject", - "questionPanelHeaderText": "TODO: We need a description for this panel" + "id": { + "$oid": "618a8b8ba5c83e464340aca4" + }, + "displayOrder": 4, + "definition": "Past journal articles demonstrate that knowledge of the data exists", + "impliedValues": [ + "bronze" + ] + } + ] + }, + { + "key": "data_model", + "dimension": "Data Model", + "category": "Data Documentation", + "definition": "Availability of clear, documented data model", + "includeInWizard": true, + "wizardStepTitle": "Data model", + "wizardStepDescription": "What data model requirements do you have? (optional)", + "wizardStepOrder": 4, + "wizardStepType": "radio", + "entries": [ + { + "id": { + "$oid": "618a8b8ba5c83eebd740aca5" + }, + "displayOrder": 1, + "definition": "Known and accepted data model but some key field un-coded or free text", + "label": "Known and accepted data model, with some key fields uncoded ", + "impliedValues": [ + "platinum", + "gold", + "silver", + "bronze" + ] }, { - "panelHeader": "", - "panelId": "safeproject-declarationofinterest", - "questionSets": [{ "index": { "$numberDouble": "1.0" }, "questionSetId": "safeproject-declarationofinterest" }], - "navHeader": "Declaration of interest", - "questionPanelHeaderText": "TODO: We need a description for this panel", - "pageId": "safeproject" + "id": { + "$oid": "618a8b8ba5c83eb37f40aca6" + }, + "displayOrder": 2, + "definition": "Key fields codified using a local standard", + "label": "Key fields coded using local standard", + "impliedValues": [ + "platinum", + "gold", + "silver" + ] }, { - "questionPanelHeaderText": "TODO: We need a description for this panel", - "pageId": "safeproject", - "navHeader": "Intellectual property", - "panelId": "safeproject-intellectualproperty", - "panelHeader": "", - "questionSets": [{ "questionSetId": "safeproject-intellectualproperty", "index": { "$numberDouble": "1.0" } }] + "id": { + "$oid": "618a8b8ba5c83e636740aca7" + }, + "displayOrder": 3, + "definition": "Key fields codified using a national or international standard", + "label": "Key fields coded using national/international standard", + "impliedValues": [ + "platinum", + "gold" + ] }, { - "questionSets": [{ "questionSetId": "safedata-datafields", "index": { "$numberDouble": "1.0" } }], - "panelHeader": "", - "panelId": "safedata-datafields", - "navHeader": "Data fields", - "pageId": "safedata", - "questionPanelHeaderText": "TODO: We need a description for this panel" + "id": { + "$oid": "618a8b8ba5c83effd740aca8" + }, + "displayOrder": 4, + "definition": "Data Model conforms to a national standard and key fields codified using a national/international standard", + "label": "Model conforms to national standard and key fields coded to national/internal standard", + "impliedValues": [ + "platinum" + ] }, { - "questionSets": [{ "questionSetId": "safedata-otherdatasetsintentiontolinkdata", "index": { "$numberDouble": "1.0" } }], - "panelHeader": "", - "panelId": "safedata-otherdatasetsintentiontolinkdata", - "navHeader": "Other datasets - Intention to link data", - "pageId": "safedata", - "questionPanelHeaderText": "TODO: We need a description for this panel" + "id": { + "$oid": "618a8b8ba5c83e917e40aca9" + }, + "displayOrder": 5, + "definition": "N/A", + "label": "N/A", + "impliedValues": [] + } + ] + }, + { + "key": "data_dictionary", + "dimension": "Data Dictionary", + "category": "Data Documentation", + "definition": "Provided documented data dictionary and terminologies", + "entries": [ + { + "id": { + "$oid": "618a8b8ba5c83e619040acaa" + }, + "displayOrder": 1, + "definition": "Dictionary is based on international standards and includes mapping", + "impliedValues": [ + "platinum" + ] }, { - "navHeader": "Lawful basis", - "panelId": "safedata-lawfulbasis", - "panelHeader": "General Data Protection Regulation (GDPR) applies to ‘controllers’ and ‘processors’. \n\nA controller determines the purposes and means of processing personal data.\n\nA processor is responsible for processing personal data on behalf of a controller.\n \nGDPR applies to processing carried out by organisations operating within the EU. It also applies to organisations outside the EU that offer goods or services to individuals in the EU.\nGDPR does not apply to certain activities including processing covered by the Law Enforcement Directive, processing for national security purposes and processing carried out by individuals purely for personal/household activities. \n \nGDPR only applies to information which relates to an identifiable living individual. Information relating to a deceased person does not constitute personal data and therefore is not subject to the GDPR.", - "questionSets": [{ "questionSetId": "safedata-lawfulbasis", "index": { "$numberDouble": "1.0" } }], - "questionPanelHeaderText": "TODO: We need a description for this panel", - "pageId": "safedata" + "id": { + "$oid": "618a8b8ba5c83e283240acab" + }, + "displayOrder": 2, + "definition": "Dictionary relates to national definitions", + "impliedValues": [ + "gold" + ] }, { - "pageId": "safedata", - "questionPanelHeaderText": "TODO: We need a description for this panel", - "navHeader": "Confidentiality avenue", - "questionSets": [{ "questionSetId": "safedata-confidentialityavenue", "index": { "$numberDouble": "1.0" } }], - "panelHeader": "", - "panelId": "safedata-confidentialityavenue" + "id": { + "$oid": "618a8b8ba5c83e4c2840acac" + }, + "displayOrder": 3, + "definition": "Definitions compiled into local data dictionary which is available online", + "impliedValues": [ + "silver" + ] }, { - "pageId": "safedata", - "questionPanelHeaderText": "TODO: We need a description for this panel", - "questionSets": [{ "index": { "$numberDouble": "1.0" }, "questionSetId": "safedata-ethicalapproval" }], - "panelId": "safedata-ethicalapproval", - "panelHeader": "This section details the research and ethics approval which you have obtained or sought for your project, or otherwise provides evidence as to why such approval is not necessary. For instance, for data analysis done on data deemed anonymous, no ethical approval is explicitly needed for said analyses. \n\nWhere such approval is not in place, it is important that you demonstrate why this is the case and provide assurances if approval is pending. If you need advice on whether ethics approval is necessary, you should approach your local ethics services in the first instance. Information about UK research ethics committees and ethical opinions can be found on the Health Research Authority (HRA) website.", - "navHeader": "Ethical approval" + "id": { + "$oid": "618a8b8ba5c83eb4d840acad" + }, + "displayOrder": 4, + "definition": "Data definitions available", + "impliedValues": [ + "bronze" + ] + } + ] + }, + { + "key": "provenance", + "dimension": "Provenance", + "category": "Data Documentation", + "definition": "Clear description of source and history of the dataset, providing a \"transparent data pipeline\"", + "includeInWizard": true, + "wizardStepTitle": "Provenance", + "wizardStepDescription": "To what level of detail do you require the origin of the dataset to be documented? (optional)", + "wizardStepOrder": 5, + "wizardStepType": "radio", + "entries": [ + { + "id": { + "$oid": "618a8b8ba5c83e5baa40acae" + }, + "displayOrder": 1, + "definition": "Source of the dataset is documented", + "label": "Dataset source documented", + "impliedValues": [ + "platinum", + "gold", + "silver", + "bronze" + ] }, { - "questionSets": [{ "questionSetId": "safesettings-storageandprocessing", "index": { "$numberDouble": "1.0" } }], - "panelHeader": "This section details in what way the proposal aims to store and use data, and controls in place to minimise risks associated with this storage and use. If you have indicated that your proposal seeks to store and use data exclusively through a recognised trusted research environment, then you do not need to complete this section.\n In relation to personal data, means any operation or set of operations which is performed on personal data or on sets of personal data (whether or not by automated means, such as collection, recording, organisation, structuring, storage, alteration, retrieval, consultation, use, disclosure, dissemination, restriction, erasure or destruction).\n \n All Locations where processing will be undertaken, for the avoidance of doubt storage is considered processing. For each separate organisation processing data which is not fully anonymous a separate partner organisation form must also be completed.\n \n Processing, in relation to information or data means obtaining, recording or holding the information or data or carrying out any operation or set of operations on the information or data, including—\n a) organisation, adaptation or alteration of the information or data,\n b) retrieval, consultation or use of the information or data,\n c) disclosure of the information or data by transmission,\n dissemination or otherwise making available, or\n d) alignment, combination, blocking, erasure or destruction of the information or data.\n\nPlease note that where an applicant has explicit consent from participants (such as in cohort studies) to hold linked health records, and therefore request extraction of data held by SAIL back to their own research setting, rather than be accessed solely in the remote desktop environment SAIL providers, a user may apply in these circumstances to SAIL for such extraction, with justification provided through the means of their consent documentation and ethical approval to hold such data outside of our secure setting.\n\nPlease use the file upload function if you're not able to add all organisations via the form.", - "panelId": "safesettings-storageandprocessing", - "navHeader": "Storage and processing", - "pageId": "safesettings", - "questionPanelHeaderText": "TODO: We need a description for this panel" + "id": { + "$oid": "618a8b8ba5c83e12d940acaf" + }, + "displayOrder": 2, + "definition": "Source of the dataset and any transformations, rules and exclusions documented", + "label": "Dataset source, any transformations, rule and exclusions documented", + "impliedValues": [ + "platinum", + "gold", + "silver" + ] }, { - "questionPanelHeaderText": "TODO: We need a description for this panel", - "pageId": "safesettings", - "panelHeader": "", - "panelId": "safesettings-dataflow", - "questionSets": [{ "questionSetId": "safesettings-dataflow", "index": { "$numberDouble": "1.0" } }], - "navHeader": "Dataflow" - }, + "id": { + "$oid": "618a8b8ba5c83e4d7340acb0" + }, + "displayOrder": 3, + "definition": "All original data items listed, all transformations, rules and exclusion listed and impact of these", + "label": "All original data items, transformations, rules, exclusions and impact listed", + "impliedValues": [ + "platinum", + "gold" + ] + }, { - "questionPanelHeaderText": "TODO: We need a description for this panel", - "pageId": "safeoutputs", - "panelId": "safeoutputs-outputsdisseminationplans", - "panelHeader": "", - "questionSets": [{ "questionSetId": "safeoutputs-outputsdisseminationplans", "index": { "$numberDouble": "1.0" } }], - "navHeader": "Outputs dissemination plans" - }, + "id": { + "$oid": "618a8b8ba5c83e550740acb1" + }, + "displayOrder": 4, + "definition": "Ability to view earlier versions, including versions before any transformations have been applied data (in line with deidentification and IG approval) and review the impact of each stage of data cleaning", + "label": "Earlier and 'raw' versions and the impact of each stage of data cleaning", + "impliedValues": [ + "platinum" + ] + }, { - "questionPanelHeaderText": "TODO: We need a description for this panel", - "pageId": "safeoutputs", - "panelHeader": "", - "panelId": "safeoutputs-retention", - "questionSets": [{ "questionSetId": "safeoutputs-retention", "index": { "$numberDouble": "1.0" } }], - "navHeader": "Retention" + "id": { + "$oid": "618a8b8ba5c83e32c140acb2" + }, + "displayOrder": 5, + "definition": "N/A", + "label": "N/A", + "impliedValues": [] } - ], - "questionSets": [ - { - "questionSetId": "primaryapplicant", - "questionSetHeader": "Primary applicant", - "questions": [ - { - "guidance": "Please insert your full name.", - "validations": [{ "message": "Please enter a value", "type": "isLength", "params": [{ "$numberDouble": "1.0" }] }], - "questionId": "safepeopleprimaryapplicantfullname", - "input": { "type": "textInput", "required": true }, - "question": "Full name", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "question": "Job title", - "questionId": "safepeopleprimaryapplicantjobtitle", - "validations": [{ "params": [{ "$numberDouble": "1.0" }], "type": "isLength", "message": "Please enter a value" }], - "input": { "required": true, "type": "textInput" }, - "lockedQuestion": 1, - "defaultQuestion": 1 - }, - { - "questionId": "safepeopleprimaryapplicanttelephone", - "input": { "type": "textInput" }, - "question": "Telephone", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "question": "ORCID", - "input": { "type": "textInput" }, - "questionId": "safepeopleprimaryapplicantorcid", - "guidance": "ORCID provides a persistent digital identifier (an ORCID iD) that you own and control, and that distinguishes you from every other researcher. You can create an ORCID profile at https://orcid.org/. If you have an ORCID iD please include it here. ", - "lockedQuestion": 0, - "defaultQuestion": 1 - }, - { - "question": "Email", - "validations": [ - { "message": "Please enter a value", "type": "isLength", "params": [{ "$numberDouble": "1.0" }] }, - { "type": "isEmail" } - ], - "input": { "required": true, "type": "textInput" }, - "questionId": "safepeopleprimaryapplicantemail", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "input": { - "options": [ - { "value": "Yes", "text": "Yes" }, - { "value": "No", "text": "No" } - ], - "label": "Will you access the data requested?", - "type": "radioOptionsInput" - }, - "questionId": "safepeopleprimaryapplicantaccessdata", - "guidance": "Please confirm whether the applicant will be accessing the data that is being requested.", - "question": "Will you access the data requested?", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "question": "Are you an accredited researcher under the Digital Economy Act 2017?", - "input": { - "label": "Are you an accredited researcher under the Digital Economy Act 2017?", - "type": "radioOptionsInput", - "options": [ - { - "text": "Yes", - "value": "Yes", - "conditionalQuestions": [ - { - "question": "If yes, please provide your accredited researcher number.", - "input": { "type": "textareaInput" }, - "questionId": "safepeopleprimaryapplicantaccreditedresearchernumber" - } - ] - }, - { - "value": "No", - "text": "No", - "conditionalQuestions": [ - { - "questionId": "safepeopleprimaryapplicantaccreditedresearcherintention", - "input": { "type": "textareaInput" }, - "question": "If no, please specify if you are planning to become an accredited researcher." - } - ] - } - ] - }, - "questionId": "safepeopleprimaryapplicantaccreditedresearcher", - "guidance": "Depending on the type of data you are requesting, you might be required to become an accredited researcher. Most access to data in the Secure Research Service (SRS) will be by researchers accredited under the Digital Economy Act 2017 (DEA). \n\nThe UK Statistics Authority has published further information on the criteria to be met in a Research Code of Practice and Accreditation criteria. Researchers can apply for accreditation through the Research Accreditation Service (RAS).\n\nFull accredited researcher status is valid for five years. Provisional accredited researcher status is valid for one year.\n\nMore information here: https://www.gov.uk/government/publications/digital-economy-act-2017-part-5-codes-of-practice/research-code-of-practice-and-accreditation-criteria#section-b-accreditation-of-researchers-and-peer-reviewers", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "question": "Have you undertaken professional training or education on the topic of Information Governance?", - "questionId": "safepeopleprimaryapplicanttraininginformationgovernance", - "input": { - "options": [ - { - "conditionalQuestions": [ - { - "input": { "type": "textareaInput" }, - "questionId": "safepeopleprimaryapplicanttraininginformationgovernancerecent", - "guidance": "Evidence of Information Governance training is an important aspect of most applications, giving assurance that individuals are aware of the privacy, confidentiality, data protection and Caldicott implications of working with personal data. \n\nPlease ensure you have checked with the data custodian if training is required for your application.", - "question": "Please provide full details regarding the most recent training" - } - ], - "text": "Yes", - "value": "Yes" - }, - { - "text": "No", - "value": "No", - "conditionalQuestions": [ - { - "input": { "type": "textareaInput" }, - "questionId": "safepeopleprimaryapplicanttraininginformationgovernanceintention", - "guidance": "Evidence of Information Governance training is an important aspect of most applications, giving assurance that individuals are aware of the privacy, confidentiality, data protection and Caldicott implications of working with personal data. \n\nPlease ensure you have checked with the data custodian if training is required for your application.", - "question": "Please provide any details of plans to attend training, if applicable" - } - ] - } - ], - "label": "Have you undertaken professional training or education on the topic of Information Governance?", - "type": "radioOptionsInput" - }, - "guidance": "Evidence of Information Governance training is an important aspect of most applications, giving assurance that individuals are aware of the privacy, confidentiality, data protection and Caldicott implications of working with personal data. \n\nPlease ensure you have checked with the data custodian if training is required for your application.", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "questionId": "safepeopleprimaryapplicantorganisationname", - "validations": [{ "params": [{ "$numberDouble": "1.0" }], "message": "Please enter a value", "type": "isLength" }], - "input": { "type": "textInput", "required": true }, - "guidance": "Please give the full name of the organisation on whose behalf you are making the application or within which you work in your professional capacity as an applicant. This should include a parent organisation, and sub-division or department if appropriate (for example University of Edinburgh, Department of Informatics).", - "question": "Your organisation name", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "question": "Does your organisation have a current Data Security and Protection Toolkit (DSPT) published assessment?", - "validations": [{ "params": [{ "$numberDouble": "1.0" }], "type": "isLength", "message": "Please select an option" }], - "input": { - "type": "radioOptionsInput", - "required": true, - "label": "Does your organisation have a current Data Security and Protection Toolkit (DSPT) published assessment?", - "options": [ - { - "text": "Yes", - "value": "Yes", - "conditionalQuestions": [ - { - "question": "If yes, please provide the current status", - "input": { "type": "textInput" }, - "questionId": "safepeopleprimaryapplicantorganisationdatasecurityprotectionkitstatus" - }, - { - "question": "If yes, please provide the date published", - "questionId": "safepeopleprimaryapplicantorganisationdatasecurityprotectionkitdatepublished", - "input": { "type": "datePickerCustom" }, - "validations": [{ "type": "isCustomDate" }] - } - ] - }, - { "value": "No", "text": "No" } - ] - }, - "questionId": "safepeopleprimaryapplicantorganisationdatasecurityprotectionkit", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "question": "Will your organisation act as data controller?", - "input": { - "type": "radioOptionsInput", - "label": "Will your organisation act as data controller?", - "options": [ - { - "conditionalQuestions": [ - { - "question": "ICO registered number", - "questionId": "safepeopleprimaryapplicantorganisationicoregisterednumber", - "input": { "type": "textInput" } - }, - { - "question": "Registered address (line 1)", - "guidance": "Please include the organisation's business address", - "questionId": "safepeopleprimaryapplicantorganisationaddressline1", - "input": { "type": "textInput" } - }, - { - "question": "Registered address (line 2)", - "input": { "type": "textInput" }, - "questionId": "safepeopleprimaryapplicantorganisationaddressline2", - "guidance": "Please include the organisation's business address" - }, - { - "question": "City", - "guidance": "Please specify the city where the organisation is located", - "questionId": "safepeopleprimaryapplicantorganisationcity", - "input": { "type": "textInput" } - }, - { - "question": "Postcode", - "guidance": "Please include the organisation's business address postcode.", - "input": { "type": "textInput" }, - "questionId": "safepeopleprimaryapplicantorganisationpostcode" - }, - { - "question": "Country", - "questionId": "safepeopleprimaryapplicantorganisationcountry", - "input": { "type": "textInput" }, - "guidance": "Please specify the country where the organisation is located" - }, - { - "question": "Organisation type", - "label": "Organisation type", - "guidance": "Please select type of organisation, unique purpose or role of the organisation", - "questionId": "safepeopleprimaryapplicantorganisationtype", - "input": { - "options": [ - { "text": "Academic institution", "value": "Academic institution" }, - { "value": "National body", "text": "National body" }, - { "value": "Healthcare provider", "text": "Healthcare provider" }, - { "text": "Healthcare comissioner", "value": "Healthcare comissioner" }, - { "text": "Commercial body", "value": "Commercial body" }, - { "text": "Local Authority", "value": "Local Authority" }, - { "value": "Other", "text": "Other" } - ], - "type": "checkboxOptionsInput" - } - }, - { - "question": "Please provide details", - "input": { "type": "textareaInput" }, - "questionId": "safepeopleprimaryapplicantorganisationtypeotherdetails" - } - ], - "text": "Yes", - "value": "Yes" - }, - { "value": "No", "text": "No" }, - { "value": "Unsure", "text": "Unsure" } - ] - }, - "questionId": "safepeopleprimaryapplicantorganisationdatacontroller", - "guidance": "Please specify if your organisation will act as a data controller. If your organisation is not the sole data controller, please provide details of other data controllers. ", - "lockedQuestion": 1, - "defaultQuestion": 0 - } - ] + ] + }, + { + "includeInWizard": true, + "wizardStepTitle": "Search terms", + "wizardStepDescription": "Please type in any relevant search terms to refine your search (optional)", + "wizardStepOrder": 6, + "wizardStepType": "search", + "entries": [] + }, + { + "key": "linkages", + "dimension": "Linkages", + "category": "Value & Interest", + "definition": "Ability to link with other datasets", + "entries": [ + { + "id": { + "$oid": "618a8b8ba5c83eae8640acb3" + }, + "displayOrder": 1, + "definition": "Existing linkage with reusable or downstream approvals", + "impliedValues": [ + "platinum" + ] }, { - "questionSetHeader": "Other individuals", - "questionSetId": "safepeople-otherindividuals", - "questions": [ - { - "question": "Full name", - "input": { "type": "textInput" }, - "questionId": "safepeopleotherindividualsfullname", - "guidance": "Full name is the individual's first and last name", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "question": "Job title", - "input": { "type": "textInput" }, - "questionId": "safepeopleotherindividualsjobtitle", - "guidance": "Job Title is the name of the position the individual holds within their organisation.", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "question": "Organisation", - "questionId": "safepeopleotherindividualsorganisation", - "input": { "type": "textInput" }, - "guidance": "Please include the individual's organisation.", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "input": { - "type": "checkboxOptionsInput", - "label": "Role", - "options": [ - { "value": "Principal investigator", "text": "Principal investigator" }, - { "text": "Collaborator", "value": "Collaborator" }, - { "value": "Team member", "text": "Team member" }, - { - "value": "Other", - "text": "Other", - "conditionalQuestions": [ - { - "questionId": "safepeopleotherindividualsroleotherdetails", - "input": { "type": "textareaInput" }, - "question": "If other, please specify" - } - ] - } - ] - }, - "questionId": "safepeopleotherindividualsrole", - "guidance": "A role is a function that the applicant plays. It might include role types and accreditation for those that are accessing the secure data and those that are not but would see cleared outputs from the project. \r\n (i.e. project lead, deputy lead, accrediter, researcher, peer reviewer)", - "question": "Role", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "question": "Will this person access the data requested?", - "questionId": "safepeopleotherindividualsaccessdata", - "input": { - "options": [ - { "value": "Yes", "text": "Yes" }, - { "text": "No", "value": "No" } - ], - "label": "Will this person access the data requested?", - "type": "radioOptionsInput" - }, - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "questionId": "safepeopleotherindividualsaccreditedresearcher", + "id": { + "$oid": "618a8b8ba5c83ee0f540acb4" + }, + "displayOrder": 2, + "definition": "List of restrictions on the type of linkages detailed. List of previously successful dataset linkages performed, with navigable links to linked datasets via at DOI/URL", + "impliedValues": [ + "gold" + ] + }, + { + "id": { + "$oid": "618a8b8ba5c83e56a940acb5" + }, + "displayOrder": 3, + "definition": "Available linkages outlined and/or List of datasets previously successfully linked provided", + "impliedValues": [ + "silver" + ] + }, + { + "id": { + "$oid": "618a8b8ba5c83ee6f540acb6" + }, + "displayOrder": 4, + "definition": "Identifiers to demonstrate ability to link to other datasets", + "impliedValues": [ + "bronze" + ] + } + ] + }, + { + "key": "data_enrichments", + "dimension": "Data Enrichments", + "category": "Value & Interest", + "definition": "Data sources enriched with annotations, image labels, phenomes, derivations, NLP derived data labels", + "entries": [ + { + "id": { + "$oid": "618a8b8ba5c83e9b8940acb7" + }, + "displayOrder": 1, + "definition": "The data include additional derived fields, or enriched data", + "impliedValues": [ + "platinum" + ] + }, + { + "id": { + "$oid": "618a8b8ba5c83e139e40acb8" + }, + "displayOrder": 2, + "definition": "The data include additional derived fields, or enriched data used by other available data sources", + "impliedValues": [ + "gold" + ] + }, + { + "id": { + "$oid": "618a8b8ba5c83e4a9d40acb9" + }, + "displayOrder": 3, + "definition": "The derived fields or enriched data were generated from, or used by, a peer reviewed algorithm", + "impliedValues": [ + "silver" + ] + }, + { + "id": { + "$oid": "618a8b8ba5c83eaa7140acba" + }, + "displayOrder": 4, + "definition": "The data includes derived fields or enriched data from a national report", + "impliedValues": [ + "bronze" + ] + } + ] + } + ] + }, + "masterSchema": { + "pages": [ + { + "description": "Who is going to be accessing the data?\n\nSafe People should have the right motivations for accessing research data and understand the legal and ethical considerations when using data that may be sensitive or confidential. Safe People should also have sufficient skills, knowledge and experience to work with the data effectively. Researchers may need to undergo specific training or accreditation before accessing certain data or research environments and demonstrate that they are part of a bona fide research organisation.\n\nThe purpose of this section is to ensure that:\n- details of people who will be accessing the data and the people who are responsible for completing the application are identified\n- any individual or organisation that intends to access the data requested is identified\n- all identified individuals have the necessary accreditation and/or expertise to work with the data effectively.", + "title": "Safe people", + "pageId": "safepeople", + "active": true + }, + { + "active": false, + "pageId": "safeproject", + "title": "Safe project", + "description": "What is the purpose of accessing the data?\n\nSafe projects are those that have a valid research purpose with a defined public benefit. \nFor access to data to be granted the researchers need to demonstrate that their proposal is an appropriate and ethical use of the data, and that it is intended to deliver clear public benefits. The purpose of this section is to ensure that:\n- the project rationale is explained in lay terms\n- the research purpose has a defined public benefit. This can be new knowledge, new treatments, improved pathways of care, new techniques of training staff. \n- how the data requested will be used to achieve the project objectives is articulated." + }, + { + "active": false, + "description": "Safe data ensure that researchers have a clear legal basis for accessing the data and do not inadvertently learn something about the data subjects during the course of their analysis, minimising the risks of re-identification.\nThe minimisation of this risk could be achieved by removing direct identifiers, aggregating values, banding variables, or other statistical techniques that may make re-identification more difficult. Sensitive or confidential data could not be considered to be completely safe because of the residual risk to a data subject’s confidentiality. Hence other limitations on access will need to be applied.\n\nThe purpose of this section is to ensure that: \n- there is a clear legal basis for accessing the requested data\n- the data requested is proportionate to the requirement of the project \n- all data requested is necessary in order to achieve the public benefit declared \n- data subjects cannot be identified by your team by cross-referencing datasets from anywhere else.", + "title": "Safe data", + "pageId": "safedata" + }, + { + "pageId": "safesettings", + "title": "Safe settings", + "description": "Safe settings are analytics environments where researchers can access and analyse the requested datasets in a safe and ethical way. Safe settings encompass the physical environment and procedural arrangements such as the supervision and auditing regimes. For safe settings, the likelihood of both deliberate and accidental disclosure needs to be explicitly considered.\n\nThe purpose of this section is to ensure that:\n\n- researchers access requested data in a secure and controlled setting such as a Trusted Research Environment (TRE) that limits the unauthorised use of the data\n- practical controls and appropriate restrictions are in place if researchers access data though non-TRE environment. There may be requirements that data is held on restricted access servers, encrypted and only decrypted at the point of use.", + "active": false + }, + { + "description": "Safe outputs ensure that all research outputs cannot be used to identify data subjects. They typically include ‘descriptive statistics’ that have been sufficiently aggregated such that identification is near enough impossible, and modelled outputs which are inherently non-confidential. The purpose of this section is to ensure that:\n\n- controls are in place to minimise risks associated with planned outputs and publications \n- the researchers aim to openly publish their results to enable use, scrutiny and further research.", + "pageId": "safeoutputs", + "title": "Safe outputs", + "active": false + }, + { + "active": false, + "description": "Any additional information or files requested by the Data Custodian of the datasets you are requesting to access can be uploaded in this section.", + "title": "Additional information & files", + "pageId": "additionalinformationfiles" + } + ], + "formPanels": [ + { + "panelId": "safepeople-primaryapplicant", + "index": 1, + "pageId": "safepeople" + }, + { + "panelId": "safepeople-otherindividuals", + "pageId": "safepeople", + "index": 2 + }, + { + "panelId": "safeproject-aboutthisapplication", + "pageId": "safeproject", + "index": 3 + }, + { + "panelId": "safeproject-projectdetails", + "pageId": "safeproject", + "index": 4 + }, + { + "index": 5, + "pageId": "safeproject", + "panelId": "safeproject-funderinformation" + }, + { + "pageId": "safeproject", + "index": 6, + "panelId": "safeproject-sponsorinformation" + }, + { + "index": 7, + "pageId": "safeproject", + "panelId": "safeproject-declarationofinterest" + }, + { + "panelId": "safeproject-intellectualproperty", + "pageId": "safeproject", + "index": 8 + }, + { + "panelId": "safedata-datafields", + "index": 9, + "pageId": "safedata" + }, + { + "index": 10, + "pageId": "safedata", + "panelId": "safedata-analysis" + }, + { + "pageId": "safedata", + "index": 11, + "panelId": "safedata-samplesrequired" + }, + { + "index": 12, + "pageId": "safedata", + "panelId": "safedata-otherdatasetsintentiontolinkdata" + }, + { + "panelId": "safedata-statisticalanalysis", + "index": 13, + "pageId": "safedata" + }, + { + "pageId": "safedata", + "index": 14, + "panelId": "safedata-lawfulbasis" + }, + { + "pageId": "safedata", + "index": 15, + "panelId": "safedata-confidentialityavenue" + }, + { + "panelId": "safedata-ethicalapproval", + "pageId": "safedata", + "index": 16 + }, + { + "index": 17, + "pageId": "safesettings", + "panelId": "safesettings-storageandprocessing" + }, + { + "panelId": "safesettings-dataflow", + "pageId": "safesettings", + "index": 18 + }, + { + "index": 19, + "pageId": "safeoutputs", + "panelId": "safeoutputs-outputsdisseminationplans" + }, + { + "pageId": "safeoutputs", + "index": 20, + "panelId": "safeoutputs-retention" + }, + { + "panelId": "safeoutputs-archiving", + "index": 21, + "pageId": "safeoutputs" + }, + { + "pageId": "additionalinformationfiles", + "index": 22, + "panelId": "additionalinformationfiles-invoicecontact" + }, + { + "pageId": "additionalinformationfiles", + "index": 23, + "panelId": "additionalinformationfiles-datasharingagreementsignatory" + } + ], + "questionPanels": [ + { + "questionSets": [ + { + "index": 1, + "questionSetId": "safepeople-primaryapplicant" + } + ], + "pageId": "safepeople", + "questionPanelHeaderText": "TODO: We need a description for this panel", + "panelHeader": "This section should include key contact details for the person who is leading the project; key contact details for the person(s) who (are) leading the project from other organisations. Only one contact from each organisation is needed. \n\nThe 'Primary applicant' is the person filling out the application form and principal contact for the application. This is usually the person with operational responsibility for the proposal. Each application must have details for at least one person.", + "navHeader": "Primary applicant", + "panelId": "safepeople-primaryapplicant" + }, + { + "pageId": "safepeople", + "questionSets": [ + { + "questionSetId": "safepeople-otherindividuals", + "index": 1 + }, + { + "index": 100, + "questionSetId": "add-safepeople-otherindividuals" + } + ], + "navHeader": "Other individuals", + "panelId": "safepeople-otherindividuals", + "panelHeader": "This section should include key contact details for the person who is leading the project; key contact details for the person(s) who (are) leading the project from other organisations. Only one contact from each organisation is needed. \n\nThe 'Primary applicant' is the person filling out the application form and principal contact for the application. This is usually the person with operational responsibility for the proposal. Each application must have details for at least one person.", + "questionPanelHeaderText": "TODO: We need a description for this panel" + }, + { + "pageId": "safeproject", + "questionSets": [ + { + "index": 1, + "questionSetId": "safeproject-aboutthisapplication" + } + ], + "navHeader": "About this application", + "panelId": "safeproject-aboutthisapplication", + "questionPanelHeaderText": "TODO: We need a description for this panel", + "panelHeader": "" + }, + { + "panelHeader": "", + "questionPanelHeaderText": "TODO: We need a description for this panel", + "navHeader": "Project details", + "panelId": "safeproject-projectdetails", + "questionSets": [ + { + "index": 1, + "questionSetId": "safeproject-projectdetails" + } + ], + "pageId": "safeproject" + }, + { + "questionSets": [ + { + "index": 1, + "questionSetId": "safeproject-funderinformation" + } + ], + "pageId": "safeproject", + "questionPanelHeaderText": "TODO: We need a description for this panel", + "panelHeader": "A funder is the organisation or body providing the financial resource to make the project possible, and may be different to the organisation detailed in the Safe people section. Please provide details of the main funder organisations supporting this project.\n\nPlease use the file upload function if you're not able to add all funders via the form.\n", + "panelId": "safeproject-funderinformation", + "navHeader": "Funder information" + }, + { + "pageId": "safeproject", + "questionSets": [ + { + "index": 1, + "questionSetId": "safeproject-sponsorinformation" + } + ], + "panelId": "safeproject-sponsorinformation", + "navHeader": "Sponsor information", + "questionPanelHeaderText": "TODO: We need a description for this panel", + "panelHeader": "The sponsor is usually, but does not have to be, the applicant’s substantive employer. The sponsor takes primary responsibility for ensuring that the design of the project meets appropriate standards and that arrangements are in place to ensure appropriate conduct and reporting.\n\nPlease use the file upload function if you're not able to add all sponsors via the form.\n" + }, + { + "pageId": "safeproject", + "questionSets": [ + { + "questionSetId": "safeproject-declarationofinterest", + "index": 1 + } + ], + "panelId": "safeproject-declarationofinterest", + "navHeader": "Declaration of interest", + "questionPanelHeaderText": "TODO: We need a description for this panel", + "panelHeader": "All interests that might unduly influence an individual’s judgement and objectivity in the use of the data being requested are of relevance, particularly if it involves payment or financial inducement. \n\nThese might include any involvement of commercial organisations at arm’s-length to the project, or likely impact on commercial organisations, individually or collectively, that might result from the outcomes or methodology of the project.\n\nAll individuals named in this application who have an interest this application must declare their interest.\n" + }, + { + "navHeader": "Intellectual property", + "panelId": "safeproject-intellectualproperty", + "questionPanelHeaderText": "TODO: We need a description for this panel", + "panelHeader": "All interests that might unduly influence an individual’s judgement and objectivity in the use of the data being requested are of relevance, particularly if it involves payment or financial inducement. \n\nThese might include any involvement of commercial organisations at arm’s-length to the project, or likely impact on commercial organisations, individually or collectively, that might result from the outcomes or methodology of the project.\n\nAll individuals named in this application who have an interest this application must declare their interest.\n", + "pageId": "safeproject", + "questionSets": [ + { + "questionSetId": "safeproject-intellectualproperty", + "index": 1 + } + ] + }, + { + "pageId": "safedata", + "questionSets": [ + { + "index": 1, + "questionSetId": "safedata-datafields" + } + ], + "panelId": "safedata-datafields", + "navHeader": "Data fields", + "questionPanelHeaderText": "TODO: We need a description for this panel", + "panelHeader": "These are the Information assets which your project seeks to access and use. You should consider this definition to be wide in scope and include any source of information which you propose to access and use. The data may be highly structured or less structured in nature, already existing or to be newly collected or gathered. \n\nExamples may include national datasets, local data sets, national or local extracts from systems, national or local registries or networks, patient records, or new information to be gathered from patients, families or other cohorts. It could also include metadata which may need to be accessed when physical samples are being requested.\n\n“New data” should only include data that is being specifically gathered for the first time for the purposes of this project. i.e., data already held in case notes and transferred to a form is not “new” data, but a survey filled out by clinicians in order to gather information not recorded anywhere else is “new”." + }, + { + "questionSets": [ + { + "index": 1, + "questionSetId": "safedata-analysis" + } + ], + "pageId": "safedata", + "panelHeader": "These are the Information assets which your project seeks to access and use. You should consider this definition to be wide in scope and include any source of information which you propose to access and use. The data may be highly structured or less structured in nature, already existing or to be newly collected or gathered. \n\nExamples may include national datasets, local data sets, national or local extracts from systems, national or local registries or networks, patient records, or new information to be gathered from patients, families or other cohorts. It could also include metadata which may need to be accessed when physical samples are being requested.\n\n“New data” should only include data that is being specifically gathered for the first time for the purposes of this project. i.e., data already held in case notes and transferred to a form is not “new” data, but a survey filled out by clinicians in order to gather information not recorded anywhere else is “new”.", + "questionPanelHeaderText": "TODO: We need a description for this panel", + "panelId": "safedata-analysis", + "navHeader": "Analysis" + }, + { + "pageId": "safedata", + "questionSets": [ + { + "index": 1, + "questionSetId": "safedata-samplesrequired" + } + ], + "panelId": "safedata-samplesrequired", + "navHeader": "Samples required", + "panelHeader": "These are the Information assets which your project seeks to access and use. You should consider this definition to be wide in scope and include any source of information which you propose to access and use. The data may be highly structured or less structured in nature, already existing or to be newly collected or gathered. \n\nExamples may include national datasets, local data sets, national or local extracts from systems, national or local registries or networks, patient records, or new information to be gathered from patients, families or other cohorts. It could also include metadata which may need to be accessed when physical samples are being requested.\n\n“New data” should only include data that is being specifically gathered for the first time for the purposes of this project. i.e., data already held in case notes and transferred to a form is not “new” data, but a survey filled out by clinicians in order to gather information not recorded anywhere else is “new”.", + "questionPanelHeaderText": "TODO: We need a description for this panel" + }, + { + "pageId": "safedata", + "questionSets": [ + { + "questionSetId": "safedata-otherdatasetsintentiontolinkdata", + "index": 1 + } + ], + "panelId": "safedata-otherdatasetsintentiontolinkdata", + "navHeader": "Other datasets - Intention to link data", + "panelHeader": "This section should include information on the planned use of datasets not already included in this application. The following information is required:\n\nA descriptive name so that it is clear what the dataset is. \n\nSufficient information to explain the content of the dataset. \n\nWhether the proposal requires linkage of data, the use of matched controls, or the extraction of anonymised data.\n\nPlease indicate which organisation or body is undertaking these processes and which variables from the data sources requested will be used to achieve the proposed linkage. This should cover every dataset and variable you will require.\n", + "questionPanelHeaderText": "TODO: We need a description for this panel" + }, + { + "questionPanelHeaderText": "TODO: We need a description for this panel", + "panelHeader": "", + "panelId": "safedata-statisticalanalysis", + "navHeader": "Statistical analysis", + "questionSets": [ + { + "questionSetId": "safedata-statisticalanalysis", + "index": 1 + } + ], + "pageId": "safedata" + }, + { + "navHeader": "Lawful basis", + "panelId": "safedata-lawfulbasis", + "panelHeader": "General Data Protection Regulation (GDPR) applies to ‘controllers’ and ‘processors’. \n\nA controller determines the purposes and means of processing personal data.\n\nA processor is responsible for processing personal data on behalf of a controller.\n \nGDPR applies to processing carried out by organisations operating within the EU. It also applies to organisations outside the EU that offer goods or services to individuals in the EU.\nGDPR does not apply to certain activities including processing covered by the Law Enforcement Directive, processing for national security purposes and processing carried out by individuals purely for personal/household activities. \n \nGDPR only applies to information which relates to an identifiable living individual. Information relating to a deceased person does not constitute personal data and therefore is not subject to the GDPR.\n", + "questionPanelHeaderText": "TODO: We need a description for this panel", + "pageId": "safedata", + "questionSets": [ + { + "index": 1, + "questionSetId": "safedata-lawfulbasis" + } + ] + }, + { + "navHeader": "Confidentiality avenue", + "panelId": "safedata-confidentialityavenue", + "panelHeader": "If confidential information is being disclosed, the organisations holding this data (both the organisation disclosing the information and the recipient organisation) must also have a lawful basis to hold and use this information, and if applicable, have a condition to hold and use special categories of confidential information, and be fair and transparent about how they hold and use this data. \n\nIn England and Wales, if you are using section 251 of the NHS Act 2006 (s251) as a legal basis for identifiable data, you will need to ensure that you have the latest approval letter and application. \n\nFor Scotland this application will be reviewed by the Public Benefit and Privacy Panel.\n\nIn Northern Ireland it will be considered by the Privacy Advisory Committee. If you are using patient consent as the legal basis, you will need to provide all relevant consent forms and information leaflets.\n", + "questionPanelHeaderText": "TODO: We need a description for this panel", + "pageId": "safedata", + "questionSets": [ + { + "questionSetId": "safedata-confidentialityavenue", + "index": 1 + } + ] + }, + { + "panelId": "safedata-ethicalapproval", + "navHeader": "Ethical approval", + "questionPanelHeaderText": "TODO: We need a description for this panel", + "panelHeader": "This section details the research and ethics approval which you have obtained or sought for your project, or otherwise provides evidence as to why such approval is not necessary. \nWhere such approval is not in place, it is important that you demonstrate why this is the case and provide assurances if approval is pending. If you need advice on whether ethics approval is necessary, you should approach your local ethics services in the first instance. Information about UK research ethics committees and ethical opinions can be found on the Health Research Authority (HRA) website.\n", + "pageId": "safedata", + "questionSets": [ + { + "questionSetId": "safedata-ethicalapproval", + "index": 1 + } + ] + }, + { + "panelId": "safesettings-storageandprocessing", + "navHeader": "Storage and processing", + "questionPanelHeaderText": "TODO: We need a description for this panel", + "panelHeader": "This section details in what way the proposal aims to store and use data, and controls in place to minimise risks associated with this storage and use. If you have indicated that your proposal seeks to store and use data exclusively through a recognised trusted research environment, then you do not need to complete this section.\n \nIn relation to personal data, means any operation or set of operations which is performed on personal data or on sets of personal data (whether or not by automated means, such as collection, recording, organisation, structuring, storage, alteration, retrieval, consultation, use, disclosure, dissemination, restriction, erasure or destruction).\n \nAll Locations where processing will be undertaken, for the avoidance of doubt storage is considered processing. For each separate organisation processing data which is not fully anonymous a separate partner organisation form must also be completed.\n \n Processing, in relation to information or data means obtaining, recording or holding the information or data or carrying out any operation or set of operations on the information or data, including—\n a) organisation, adaptation or alteration of the information or data,\n b) retrieval, consultation or use of the information or data,\n c) disclosure of the information or data by transmission,\n dissemination or otherwise making available, or\n d) alignment, combination, blocking, erasure or destruction of the information or data.\n\nPlease use the file upload function if you're not able to add all organisations via the form. Documents can be uploaded in the Additional Files section of this form.\n", + "pageId": "safesettings", + "questionSets": [ + { + "questionSetId": "safesettings-storageandprocessing", + "index": 1 + } + ] + }, + { + "panelHeader": "", + "questionPanelHeaderText": "TODO: We need a description for this panel", + "panelId": "safesettings-dataflow", + "navHeader": "Dataflow", + "questionSets": [ + { + "index": 1, + "questionSetId": "safesettings-dataflow" + } + ], + "pageId": "safesettings" + }, + { + "pageId": "safeoutputs", + "questionSets": [ + { + "index": 1, + "questionSetId": "safeoutputs-outputsdisseminationplans" + } + ], + "panelId": "safeoutputs-outputsdisseminationplans", + "navHeader": "Outputs dissemination plans", + "panelHeader": "Please include any plans for dissemination and publication of the data and results arising from your proposal. Please also specify any controls in place to minimise risks associated with publication. Dissemination can take place in a variety of ways and through many mechanisms, including through electronic media, print media or word of mouth.", + "questionPanelHeaderText": "TODO: We need a description for this panel" + }, + { + "questionSets": [ + { + "index": 1, + "questionSetId": "safeoutputs-retention" + } + ], + "pageId": "safeoutputs", + "questionPanelHeaderText": "TODO: We need a description for this panel", + "panelHeader": "This section details how the project will treat data being processed after it has been used for the purpose of the proposal outlined, including governance in place to determine how long it will be retained, and controls to manage its subsequent disposal if required. Please reference any relevant policies and procedures which are in place to govern retention and disposal of data as outlined in the proposal.", + "panelId": "safeoutputs-retention", + "navHeader": "Retention" + }, + { + "questionSets": [ + { + "questionSetId": "safeoutputs-archiving", + "index": 1 + } + ], + "pageId": "safeoutputs", + "panelHeader": "This section details how the project will treat data being processed after it has been used for the purpose of the proposal outlined, including governance in place to determine how long it will be retained, and controls to manage its subsequent disposal if required. Please reference any relevant policies and procedures which are in place to govern retention and disposal of data as outlined in the proposal.", + "questionPanelHeaderText": "TODO: We need a description for this panel", + "navHeader": "Archiving", + "panelId": "safeoutputs-archiving" + }, + { + "panelHeader": "Some custodians will only process Data Access Requests which include contact details for the invoice contact and the Data Sharing Agreement contact. If these questions are visible, it means that you have selected datasets from custodians who require this information. These contacts will only be approached if your application is approved.", + "questionPanelHeaderText": "TODO: We need a description for this panel", + "navHeader": "Invoice contact", + "panelId": "additionalinformationfiles-invoicecontact", + "questionSets": [ + { + "index": 1, + "questionSetId": "additionalinformationfiles-invoicecontact" + } + ], + "pageId": "additionalinformationfiles" + }, + { + "questionPanelHeaderText": "TODO: We need a description for this panel", + "panelHeader": "Some custodians will only process Data Access Requests which include contact details for the invoice contact and the Data Sharing Agreement contact. If these questions are visible, it means that you have selected datasets from custodians who require this information. These contacts will only be approached if your application is approved.", + "navHeader": "Data Sharing Agreement signatory", + "panelId": "additionalinformationfiles-datasharingagreementsignatory", + "questionSets": [ + { + "questionSetId": "additionalinformationfiles-datasharingagreementsignatory", + "index": 1 + } + ], + "pageId": "additionalinformationfiles" + } + ], + "questionSets": [ + { + "questionSetId": "safepeople-primaryapplicant", + "questionSetHeader": "Primary applicant", + "questions": [ + { + "questionId": "safepeopleprimaryapplicantfullname", + "defaultQuestion": 1, + "lockedQuestion": 1, + "input": { + "required": true, + "type": "textInput" + }, + "validations": [ + { + "params": [ + 1 + ], + "type": "isLength", + "message": "Please enter a value" + } + ], + "guidance": "Please insert your full name.", + "question": "Full name" + }, + { + "question": "Job title", + "guidance": "Job title is the name of the position the applicant holds within their organisation.", + "lockedQuestion": 1, + "input": { + "required": true, + "type": "textInput" + }, + "validations": [ + { + "type": "isLength", + "params": [ + 1 + ], + "message": "Please enter a value" + } + ], + "defaultQuestion": 1, + "questionId": "safepeopleprimaryapplicantjobtitle" + }, + { + "input": { + "type": "textInput" + }, + "lockedQuestion": 0, + "guidance": "Please include a contact telephone number that the applicant can be contacted on.", + "question": "Telephone", + "questionId": "safepeopleprimaryapplicanttelephone", + "defaultQuestion": 1 + }, + { + "questionId": "safepeopleprimaryapplicantorcid", + "defaultQuestion": 1, + "lockedQuestion": 0, + "input": { + "type": "textInput" + }, + "guidance": "ORCID provides a persistent digital identifier (an ORCID iD) that you own and control, and that distinguishes you from every other researcher. You can create an ORCID profile at https://orcid.org/. If you have an ORCID iD please include it here. ", + "question": "ORCID" + }, + { + "lockedQuestion": 1, + "input": { + "required": true, + "type": "textInput" + }, + "validations": [ + { + "message": "Please enter a value", + "type": "isLength", + "params": [ + 1 + ] + }, + { + "type": "isEmail" + } + ], + "guidance": "Please include an email address that the applicant can receive communications through.", + "question": "Email", + "questionId": "safepeopleprimaryapplicantemail", + "defaultQuestion": 1 + }, + { + "defaultQuestion": 1, + "questionId": "safepeopleprimaryapplicantaccessdata", + "question": "Will you access the data requested?", + "guidance": "Please confirm whether the applicant will be accessing the data that is being requested.", + "lockedQuestion": 1, + "input": { + "options": [ + { + "value": "Yes", + "text": "Yes" + }, + { + "value": "No", + "text": "No" + } + ], + "label": "Will you access the data requested?", + "type": "radioOptionsInput" + } + }, + { + "defaultQuestion": 1, + "questionId": "safepeopleprimaryapplicantaccreditedresearcher", + "guidance": "Depending on the type of data you are requesting, you might be required to become an accredited researcher. Most access to data in the Secure Research Service (SRS) will be by researchers accredited under the Digital Economy Act 2017 (DEA). \n\nThe UK Statistics Authority has published further information on the criteria to be met in a Research Code of Practice and Accreditation criteria. Researchers can apply for accreditation through the Research Accreditation Service (RAS).\n\nFull accredited researcher status is valid for five years. Provisional accredited researcher status is valid for one year.\n\nMore information here: https://www.gov.uk/government/publications/digital-economy-act-2017-part-5-codes-of-practice/research-code-of-practice-and-accreditation-criteria#section-b-accreditation-of-researchers-and-peer-reviewers\n\nPlease note if you only need to review cleared outputs from the research, you do NOT need to be accredited for this purpose.", + "question": "Are you an accredited researcher under the Digital Economy Act 2017?", + "lockedQuestion": 0, + "input": { + "options": [ + { + "text": "Yes", + "value": "Yes", + "conditionalQuestions": [ + { "input": { - "options": [ - { - "conditionalQuestions": [ - { - "question": "If yes, please provide details", - "questionId": "safepeopleotherindividualsaccreditedresearcherdetails", - "input": { "type": "textareaInput" } - } - ], - "value": "Yes", - "text": "Yes" - }, - { "value": "No", "text": "No" } - ], - "type": "radioOptionsInput", - "label": "Is this person an accredited researcher under the Digital Economy Act 2017?" + "type": "textareaInput" }, - "question": "Is this person an accredited researcher under the Digital Economy Act 2017?", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "input": { - "label": "Has this person undertaken professional training or education on the topic of Information Governance?", - "type": "radioOptionsInput", - "options": [ - { - "text": "Yes", - "value": "Yes", - "conditionalQuestions": [ - { - "input": { "type": "textareaInput" }, - "questionId": "safepeopleotherindividualstraininginformationgovernancerecent", - "question": "Please provide full details regarding the most recent training" - } - ] - }, - { - "conditionalQuestions": [ - { - "questionId": "safepeopleotherindividualstraininginformationgovernanceintention", - "input": { "type": "textareaInput" }, - "question": "Please provide any details of plans to attend training, if applicable" - } - ], - "value": "No", - "text": "No" - } - ] + "question": "If yes, please provide your accredited researcher number.", + "questionId": "safepeopleprimaryapplicantaccreditedresearchernumber" + } + ] + }, + { + "conditionalQuestions": [ + { + "questionId": "safepeopleprimaryapplicantaccreditedresearcherintention", + "input": { + "type": "textareaInput" }, - "questionId": "safepeopleotherindividualstraininginformationgovernance", - "question": "Has this person undertaken professional training or education on the topic of Information Governance?", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "question": "Please provide evidence of this person's expertise and experience relevant to delivering the project", - "input": { "type": "textareaInput" }, - "questionId": "safepeopleotherindividualsexperience", - "lockedQuestion": 1, - "defaultQuestion": 0 - } - ] + "question": "If no, please specify if you are planning to become an accredited researcher." + } + ], + "value": "No", + "text": "No" + } + ], + "type": "radioOptionsInput", + "label": "Are you an accredited researcher under the Digital Economy Act 2017?" + } }, { - "questionSetId": "add-safepeople-otherindividuals", - "questions": [ - { + "defaultQuestion": 1, + "questionId": "safepeopleprimaryapplicanttraininginformationgovernance", + "guidance": "Evidence of Information Governance training is an important aspect of most applications, giving assurance that individuals are aware of the privacy, confidentiality, data protection and Caldicott implications of working with personal data. \n\nPlease ensure you have checked with the data custodian if training is required for your application.\n", + "question": "Have you undertaken professional training or education on the topic of Information Governance?", + "lockedQuestion": 0, + "input": { + "options": [ + { + "conditionalQuestions": [ + { "input": { - "class": "btn btn-primary addButton", - "type": "buttonInput", - "action": "addRepeatableSection", - "text": "Add another individual?", - "panelId": "safepeople-otherindividuals" + "type": "textareaInput" }, - "questionId": "add-safepeople-otherindividuals", - "lockedQuestion": 1, - "defaultQuestion": 0 - } - ] + "guidance": "Evidence of Information Governance training is an important aspect of most applications, giving assurance that individuals are aware of the privacy, confidentiality, data protection and Caldicott implications of working with personal data. \n\nPlease ensure you have checked with the data custodian if training is required for your application.\n", + "question": "Please provide full details regarding the most recent training", + "questionId": "safepeopleprimaryapplicanttraininginformationgovernancerecent" + } + ], + "value": "Yes", + "text": "Yes" + }, + { + "value": "No", + "conditionalQuestions": [ + { + "questionId": "safepeopleprimaryapplicanttraininginformationgovernanceintention", + "input": { + "type": "textareaInput" + }, + "guidance": "Evidence of Information Governance training is an important aspect of most applications, giving assurance that individuals are aware of the privacy, confidentiality, data protection and Caldicott implications of working with personal data. \n\nPlease ensure you have checked with the data custodian if training is required for your application.\n", + "question": "Please provide any details of plans to attend training, if applicable" + } + ], + "text": "No" + } + ], + "type": "radioOptionsInput", + "label": "Have you undertaken professional training or education on the topic of Information Governance?" + } }, { - "questionSetHeader": "About this application", - "questionSetId": "safeproject-aboutthisapplication", - "questions": [ - { - "question": "This application is...", - "guidance": "The application could be a new application, an extension, a renewal or amendment. For extensions or amendments, you must highlight the specific information within this form that has been updated, provide an original application number and approval date, any subsequent amendment approval dates and a summary of changes and rationale for the change to your original application and any updated approvals signatures in order for the request to be processed.", - "questionId": "safeprojectaboutthisapplicationtype", - "lockedQuestion": 1, - "defaultQuestion": 0, - "input": { - "options": [ - { "text": "A new application", "value": "A new application" }, - { - "conditionalQuestions": [ - { - "questionId": "safeprojectaboutthisapplicationtypeamendmentdetails", - "input": { "type": "textareaInput" }, - "question": "Reference or details of previous application" - } - ], - "text": "An amendment to an existing application", - "value": "An amendment to an existing application" - }, - { - "conditionalQuestions": [ - { - "question": "Reference or details of previous application", - "questionId": "safeprojectaboutthisapplicationtypeextensiondetails", - "input": { "type": "textareaInput" } - } - ], - "value": "An extension of an existing approval", - "text": "An extension of an existing approval" - }, - { - "conditionalQuestions": [ - { - "question": "Reference or details of previous application", - "questionId": "safeprojectaboutthisapplicationtyperenewaldetails", - "input": { "type": "textareaInput" } - } - ], - "text": "A renewal of an existing approval", - "value": "A renewal of an existing approval" - }, - { - "text": "Related to a previous application (approved or not)", - "value": "Related to a previous application (approved or not)", - "conditionalQuestions": [ - { - "question": "Reference or details of previous application", - "questionId": "safeprojectaboutthisapplicationtyperelatedpreviousdetails", - "input": { "type": "textareaInput" } - } - ] - } - ], - "label": "This application is...", - "type": "radioOptionsInput" - } - } - ] + "lockedQuestion": 1, + "input": { + "type": "textInput", + "required": true + }, + "validations": [ + { + "message": "Please enter a value", + "type": "isLength", + "params": [ + 1 + ] + } + ], + "question": "Your organisation name", + "guidance": "Please give the full name of the organisation on whose behalf you are making the application or within which you work in your professional capacity as an applicant. This should include a parent organisation, and sub-division or department if appropriate (for example University of Edinburgh, Department of Informatics).", + "questionId": "safepeopleprimaryapplicantorganisationname", + "defaultQuestion": 1 }, { - "questions": [ - { - "guidance": "The title should identify the main area of your research so that another researcher could understand if it might be relevant to their area of study. \n \nThe titles of all Accredited Research projects are published on the UK Statistics Authority website as part of the public record of DEA Accredited Researchers.", - "validations": [{ "type": "isLength", "params": [{ "$numberDouble": "3.0" }, { "$numberDouble": "300.0" }] }], - "input": { "type": "textInput", "required": true }, - "questionId": "safeprojectprojectdetailstitle", - "question": "Title of project", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "question": "What is the type of project?", - "guidance": "A research project is a discrete scientific endeavor to answer a research question or a set of research questions. \n\nA clinic audit project is designed and conducted to produce information to inform delivery of best care. It aims to find out if healthcare is being provided in line with standards to inform care providers and patients about where a service is doing well, and where there could be improvements.\n\nA service evaluation project is designed and conducted solely to define or judge current care. It seeks to assess current service to assess how well a service is achieving its intended aims.", - "questionId": "safeprojectprojectdetailstype", - "lockedQuestion": 1, - "defaultQuestion": 0, - "validations": [{ "params": [{ "$numberDouble": "1.0" }], "type": "isLength", "message": "Please select an option" }], - "input": { - "options": [ - { "value": "Research", "text": "Research" }, - { "value": "Clinic audit", "text": "Clinic audit" }, - { "value": "Service evaluation", "text": "Service evaluation" }, - { - "conditionalQuestions": [{ "question": "If other, please specify", "input": { "type": "textInput" }, "questionId": "" }], - "value": "Other", - "text": "Other" - } - ], - "type": "radioOptionsInput", - "required": true, - "label": "What is the type of project?" + "defaultQuestion": 1, + "questionId": "safepeopleprimaryapplicantorganisationdatasecurityprotectionkit", + "guidance": "The Data Security and Protection Toolkit (DSPT) is an online self-assessment tool that allows organisations to measure their performance against the National Data Guardian’s 10 data security standards.\n\nAll organisations that have access to NHS patient data and systems must use the DSPT to provide assurance that they are practising good data security and that personal information is handled correctly.\n\nThe DSPT is an annual assessment.\n\nYou can find out the status of your organisation here https://www.dsptoolkit.nhs.uk/OrganisationSearch", + "question": "Does your organisation have a current Data Security and Protection Toolkit (DSPT) published assessment?", + "lockedQuestion": 0, + "input": { + "options": [ + { + "value": "Yes", + "conditionalQuestions": [ + { + "questionId": "safepeopleprimaryapplicantorganisationdatasecurityprotectionkitstatus", + "question": "If yes, please provide the current status", + "input": { + "type": "textInput" } - }, - { - "questionId": "safeprojectprojectdetailsneworexisting", - "lockedQuestion": 1, - "defaultQuestion": 0, - "input": { - "label": "Is this a new study or supporting an existing study?", - "type": "radioOptionsInput", - "options": [ - { "value": "New study", "text": "New study" }, - { - "text": "Existing study", - "value": "Existing study", - "conditionalQuestions": [ - { - "question": "Evidence of existing outputs", - "label": "Evidence of existing outputs", - "input": { - "options": [ - { - "value": "I have enclosed evidence of existing outputs", - "text": "I have enclosed evidence of existing outputs" - } - ], - "type": "checkboxOptionsInput" - }, - "questionId": "safeprojectprojectdetailsneworexistingexistingoutputevidence" - } - ] - } - ] + }, + { + "questionId": "safepeopleprimaryapplicantorganisationdatasecurityprotectionkitdatepublished", + "validations": [ + { + "type": "isCustomDate" + } + ], + "input": { + "type": "datePickerCustom" }, - "question": "Is this a new study or supporting an existing study?" - }, - { - "guidance": "Please provide a summary of the study in language suitable for non-experts in the field and ensure that all abbreviations in technical terminology are explained.\n \nThe summary must make clear what the specific purpose is, who will be using the data (organisations rather than individual names), what will happen to the data, whether the expected outputs are in record level form, what is known to date about your chosen project including any preliminary/related analysis and background literature reviews. Please include any potential disclosure risks and how these will be addressed.", - "validations": [{ "type": "isLength", "params": [{ "$numberDouble": "10.0" }, { "$numberDouble": "2000.0" }] }], - "input": { "required": true, "type": "textareaInput" }, - "questionId": "safeprojectprojectdetailslaysummary", - "question": "Please provide a lay summary of the project (300 words)", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "validations": [{ "type": "isCustomDate" }], - "input": { "type": "datePickerCustom" }, - "questionId": "safeproject-projectdetails-startdate", - "question": "What is the anticipated start date of the project?", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "question": "Please provide anticipated end date of the project?", - "validations": [{ "type": "isCustomDate" }], - "input": { "type": "datePickerCustom" }, - "questionId": "safeproject-projectdetails-enddate", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "question": "What are the project aims, objectives and rationale?", - "validations": [{ "params": [{ "$numberDouble": "1.0" }], "type": "isLength", "message": "Please enter a value" }], - "input": { "type": "textareaInput", "required": true }, - "questionId": "safeprojectprojectdetailsaimsobjectivesrationale", - "guidance": "Please include the background to the project by describing why you are conducting the study, the specific aims and the hypotheses that you hope to test. Summarise how the data requested are required to help address these aims. Please include whether the project has used peer review and if applicable the nature of that review. ", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "input": { "type": "textareaInput", "required": true }, - "validations": [{ "type": "isLength", "message": "Please enter a value", "params": [{ "$numberDouble": "1.0" }] }], - "questionId": "safeprojectprojectdetailsdatausageforobjectives", - "guidance": "Provide full details of your research methodology. This must include justification of sample size, analyses proposed, statistical methods, additional data sources such as linked data and any plans for collaborative work. \n\nThis information will be key to assessing whether your proposal will be feasible, deliver clear public good and be an appropriate use of data. \n\nEnsure you: \n\nSpecify the method(s) of analysis you plan to use (such as regression);\n\nAs far as possible, try to articulate the outcome or dependent variable(s). \n\nIndicate the starting point for the modelling process - acknowledging that the model may evolve.\n\nExplain (where relevant) how any potential selection/causal bias will be addressed (e.g. by including a control group with information on how this control group will be created); \n\nProvide methodology references, if a non-standard methodology is proposed;\n\nInclude information about any contribution to the field of research methodology that you believe may result from your research;\n\nInclude an explanation of how your methodological approach will answer the research question(s) set out in the project when employing methods not covered by any of the above (e.g. correlation or basic descriptive analysis will only be used, noting that such analysis might be more applicable for exploratory research).", - "question": "How will the data requested be used to achieve the project objectives?", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "question": "How will your project benefit the public and what is the anticipated impact?", - "guidance": "Use this section to give the background and justification of your proposal, to demonstrate how your project will benefit the public, as well as show your understanding of the Information Governance issues specific and inherent to your project. Please make it clear how the data requested will contribute. \n\nPlease also show that you have considered how to balance the privacy risks and public benefits when designing the study. The requirement for the datasets requested should be fully justified in the light of the aims and objectives of the proposal.", - "input": { "required": true, "type": "textareaInput" }, - "validations": [{ "params": [{ "$numberDouble": "1.0" }], "type": "isLength", "message": "Please enter a value" }], - "questionId": "safeprojectprojectdetailspublicbenefitimpact", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "questionId": "safeprojectprojectdetailspublicpatientinvolvementengagement", - "input": { "type": "textareaInput" }, - "guidance": "Provide full details of proposed public engagement plans for patient and/or user group involvement. If you have no plans, please elaborate why there will not be public engagement.", - "question": "Can you provide an outline of the public and patient involvement and engagement (PPIE*) strategies of the study or a brief explanation of why they are not planned?", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "question": "Do you anticipate any risk to individual privacy, and if so what steps have you made in your proposal to mitigate these?", - "input": { "type": "textareaInput" }, - "questionId": "safeprojectprojectdetailsindividualprivacyriskmitigation", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "input": { "type": "textareaInput" }, - "questionId": "safeprojectprojectdetailsgroupindividualdisavantageavoidance", - "question": "In considering your proposal, do you believe it could disadvantage any group or individual? Explain what steps you have taken to avoid this.", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "question": "Please provide up to 6 keywords which best summarise your proposed research project.", - "input": { "type": "textareaInput" }, - "questionId": "safeprojectprojectdetailsresearchprojectsummarykeywords", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "question": "Will the research project enhance future benefit from our research database?", - "input": { "type": "textareaInput" }, - "questionId": "safeprojectprojectdetailsresearchprojectfuturedatabasebenefit", - "lockedQuestion": 1, - "defaultQuestion": 0 - } + "question": "If yes, please provide the date published" + } + ], + "text": "Yes" + }, + { + "value": "No", + "text": "No" + } ], - "questionSetId": "safeproject-projectdetails", - "questionSetHeader": "Project details" - }, - { - "questions": [ - { - "question": "Does your project have a funder?", - "questionId": "safeprojectfunderinformationprojecthasfunder", - "lockedQuestion": 1, - "defaultQuestion": 0, - "validations": [{ "params": [{ "$numberDouble": "1.0" }], "message": "Please select an option", "type": "isLength" }], - "input": { - "label": "Does your project have a funder?", - "required": true, - "type": "radioOptionsInput", - "options": [ - { - "text": "Yes", - "value": "Yes", - "conditionalQuestions": [ - { - "question": "Please provide the organisation name", - "input": { "type": "textInput" }, - "questionId": "safeprojectfunderinformationprojecthasfundername" - }, - { - "questionId": "add-safeproject-funderinformation", - "input": { - "action": "addRepeatableQuestions", - "questionIds": ["safeprojectfunderinformationprojecthasfundername"], - "text": "Add another organisation?", - "separatorText": "Organisation Details", - "class": "btn btn-primary addButton", - "type": "buttonInput" - } - } - ] - }, - { - "text": "No", - "value": "No", - "conditionalQuestions": [ - { - "input": { "type": "textareaInput" }, - "questionId": "safeprojectfunderinformationprojecthasnofunderfundingsource", - "question": "If no, please provide details of how you intend to fund the study" - }, - { - "label": "Please provide evidence of independent peer review", - "input": { - "type": "checkboxOptionsInput", - "options": [ - { - "value": "I confirm I have provided evidence of independent peer review.", - "text": "I confirm I have provided evidence of independent peer review." - } - ] - }, - "questionId": "safeprojectfunderinformationprojecthasnofunderindependentpeerreviewevidence", - "question": "Please provide evidence of independent peer review" - } - ] - } - ] + "label": "Does your organisation have a current Data Security and Protection Toolkit (DSPT) published assessment?", + "type": "radioOptionsInput" + } + }, + { + "questionId": "safepeopleprimaryapplicantorganisationdatacontroller", + "defaultQuestion": 1, + "input": { + "options": [ + { + "value": "Yes", + "conditionalQuestions": [ + { + "questionId": "safepeopleprimaryapplicantorganisationicoregisterednumber", + "question": "ICO registration number", + "input": { + "type": "textInput" } - } - ], - "questionSetHeader": "Funder information", - "questionSetId": "safeproject-funderinformation" - }, - { - "questions": [ - { - "question": "Does your project have a sponsor?", - "questionId": "safeprojectsponsorinformationprojecthassponsor", - "lockedQuestion": 1, - "defaultQuestion": 0, - "validations": [{ "params": [{ "$numberDouble": "1.0" }], "type": "isLength", "message": "Please select an option" }], - "input": { - "type": "radioOptionsInput", - "required": true, - "label": "Does your project have a sponsor?", - "options": [ - { - "conditionalQuestions": [ - { - "questionId": "safeprojectsponsorinformationprojecthassponsorapplicant", - "input": { "type": "textInput" }, - "question": "Associated applicant" - }, - { - "question": "Organisation name", - "input": { "type": "textInput" }, - "questionId": "safeprojectsponsorinformationprojecthassponsororganisationname" - }, - { - "question": "Registered address (line 1)", - "questionId": "safeprojectsponsorinformationprojecthassponsororganisationaddressline1", - "input": { "type": "textInput" } - }, - { - "question": "Registered address (line 2)", - "questionId": "safeprojectsponsorinformationprojecthassponsororganisationaddressline2", - "input": { "type": "textInput" } - }, - { - "input": { "type": "textInput" }, - "questionId": "safeprojectsponsorinformationprojecthassponsororganisationcity", - "question": "City" - }, - { - "question": "Postcode", - "questionId": "safeprojectsponsorinformationprojecthassponsororganisationpostcode", - "input": { "type": "textInput" } - }, - { - "questionId": "safeprojectsponsorinformationprojecthassponsororganisationcountry", - "input": { "type": "textInput" }, - "question": "Country" - }, - { - "question": "Sector", - "questionId": "safeprojectsponsorinformationprojecthassponsororganisationsector", - "input": { "type": "textInput" }, - "guidance": "Please provide details of the sponsor's sector e.g. NHS, Academia, Charity, Industry." - }, - { - "question": "Size", - "questionId": "safeprojectsponsorinformationprojecthassponsororganisationsize", - "input": { "type": "textInput" } - }, - { - "questionId": "safeprojectsponsorinformationprojecthassponsororganisationadditionaldetails", - "input": { "type": "textInput" }, - "question": "Additional details" - }, - { - "question": "Contact full name", - "questionId": "safeprojectsponsorinformationprojecthassponsorcontactfullname", - "input": { "type": "textInput" } - }, - { - "question": "Contact email address", - "input": { "type": "textInput" }, - "questionId": "safeprojectsponsorinformationprojecthassponsorcontactemail" - }, - { - "question": "Contact telephone", - "input": { "type": "textInput" }, - "questionId": "safeprojectsponsorinformationprojecthassponsorcontacttelephone" - }, - { - "questionId": "add-safeproject-sponsorinformation", - "input": { - "action": "addRepeatableQuestions", - "text": "Add another organisation?", - "questionIds": [ - "safeprojectsponsorinformationprojecthassponsorapplicant", - "safeprojectsponsorinformationprojecthassponsororganisationname", - "safeprojectsponsorinformationprojecthassponsororganisationaddressline1", - "safeprojectsponsorinformationprojecthassponsororganisationaddressline2", - "safeprojectsponsorinformationprojecthassponsororganisationcity", - "safeprojectsponsorinformationprojecthassponsororganisationpostcode", - "safeprojectsponsorinformationprojecthassponsororganisationcountry", - "safeprojectsponsorinformationprojecthassponsororganisationsector", - "safeprojectsponsorinformationprojecthassponsororganisationsize", - "safeprojectsponsorinformationprojecthassponsororganisationadditionaldetails", - "safeprojectsponsorinformationprojecthassponsorcontactfullname", - "safeprojectsponsorinformationprojecthassponsorcontactemail", - "safeprojectsponsorinformationprojecthassponsorcontacttelephone" - ], - "separatorText": "Organisation Details", - "class": "btn btn-primary addButton", - "type": "buttonInput" - } - } - ], - "text": "Yes", - "value": "Yes" - }, - { "value": "No", "text": "No" } - ] + }, + { + "questionId": "safepeopleprimaryapplicantorganisationaddressline1", + "guidance": "Please include the organisation's business address.", + "question": "Registered address (line 1)", + "input": { + "type": "textInput" } - } - ], - "questionSetHeader": "Sponsor information", - "questionSetId": "safeproject-sponsorinformation" - }, - { - "questions": [ - { - "question": "Is there a commercial interest in this project?", - "questionId": "safeprojectdeclarationofinteresthascommercialinterest", - "validations": [{ "params": [{ "$numberDouble": "1.0" }], "type": "isLength", "message": "Please select an option" }], - "lockedQuestion": 1, - "defaultQuestion": 0, - "input": { - "label": "Is there a commercial interest in this project?", - "required": true, - "type": "radioOptionsInput", - "options": [ - { - "value": "Yes", - "text": "Yes", - "conditionalQuestions": [ - { - "question": "Organisation name", - "input": { "type": "textInput" }, - "questionId": "safeprojectdeclarationofinteresthascommercialinterestorganisationname" - }, - { - "question": "Registered address (line 1)", - "input": { "type": "textInput" }, - "questionId": "safeprojectdeclarationofinteresthascommercialinterestorganisationaddressline1" - }, - { - "input": { "type": "textInput" }, - "questionId": "safeprojectdeclarationofinteresthascommercialinterestorganisationaddressline2", - "question": "Registered address (line 2)" - }, - { - "question": "Postcode", - "questionId": "safeprojectdeclarationofinteresthascommercialinterestorganisationpostcode", - "input": { "type": "textInput" } - }, - { - "question": "City", - "input": { "type": "textInput" }, - "questionId": "safeprojectdeclarationofinteresthascommercialinterestorganisationcity" - }, - { - "questionId": "safeprojectdeclarationofinteresthascommercialinterestorganisationcountry", - "input": { "type": "textInput" }, - "question": "Country" - }, - { - "question": "Describe the nature of interest", - "questionId": "safeprojectdeclarationofinteresthascommercialinterestinterestnature", - "input": { "type": "textareaInput" } - }, - { - "label": "Public interest", - "questionId": "safeprojectdeclarationofinteresthascommercialinterestconfirmpublicinterest", - "input": { - "options": [ - { - "value": "I confirm that any commercial interest is public interest related.", - "text": "I confirm that any commercial interest is public interest related." - } - ], - "type": "checkboxOptionsInput" - }, - "question": "Public interest" - }, - { - "input": { - "questionIds": [ - "safeprojectdeclarationofinteresthascommercialinterestorganisationname", - "safeprojectdeclarationofinteresthascommercialinterestorganisationaddressline1", - "safeprojectdeclarationofinteresthascommercialinterestorganisationaddressline2", - "safeprojectdeclarationofinteresthascommercialinterestorganisationpostcode", - "safeprojectdeclarationofinteresthascommercialinterestorganisationcity", - "safeprojectdeclarationofinteresthascommercialinterestorganisationcountry", - "safeprojectdeclarationofinteresthascommercialinterestinterestnature", - "safeprojectdeclarationofinteresthascommercialinterestconfirmpublicinterest" - ], - "text": "Add another organisation?", - "action": "addRepeatableQuestions", - "type": "buttonInput", - "class": "btn btn-primary addButton", - "separatorText": "Organisation Details" - }, - "questionId": "add-safeproject-declarationofinterest" - } - ] - }, - { "value": "No", "text": "No" } - ] + }, + { + "input": { + "type": "textInput" + }, + "question": "Registered address (line 2)", + "guidance": "Please include the organisation's business address.", + "questionId": "safepeopleprimaryapplicantorganisationaddressline2" + }, + { + "guidance": "Please specify the city where the organisation is located", + "question": "City", + "input": { + "type": "textInput" + }, + "questionId": "safepeopleprimaryapplicantorganisationcity" + }, + { + "questionId": "safepeopleprimaryapplicantorganisationpostcode", + "input": { + "type": "textInput" + }, + "guidance": "Please include the organisation's business address postcode", + "question": "Postcode" + }, + { + "questionId": "safepeopleprimaryapplicantorganisationcountry", + "input": { + "type": "textInput" + }, + "question": "Country", + "guidance": "Please specify the country where the organisation is located." + }, + { + "questionId": "safepeopleprimaryapplicantorganisationtype", + "label": "Organisation type", + "guidance": "Please select type of organisation.", + "question": "Organisation type", + "input": { + "type": "checkboxOptionsInput", + "options": [ + { + "text": "Academic institution", + "value": "Academic institution" + }, + { + "value": "National body", + "text": "National body" + }, + { + "value": "Healthcare provider", + "text": "Healthcare provider" + }, + { + "value": "Healthcare comissioner", + "text": "Healthcare comissioner" + }, + { + "text": "Commercial body", + "value": "Commercial body" + }, + { + "text": "Local Authority", + "value": "Local Authority" + }, + { + "value": "Other", + "text": "Other" + } + ] } - } + } + ], + "text": "Yes" + }, + { + "text": "No", + "value": "No" + }, + { + "value": "Unsure", + "text": "Unsure" + } ], - "questionSetHeader": "Declaration of interest", - "questionSetId": "safeproject-declarationofinterest" - }, - { - "questionSetHeader": "Intellectual property", - "questionSetId": "safeproject-intellectualproperty", - "questions": [ - { - "input": { "type": "textareaInput" }, - "questionId": "safeprojectintellectualpropertydevelopmentnewproductprocess", - "question": "Please indicate if the research could lead to the development of a new product/process or the generation of intellectual property.", - "lockedQuestion": 1, - "defaultQuestion": 0 - } + "type": "radioOptionsInput", + "label": "Will your organisation act as data controller?" + }, + "lockedQuestion": 0, + "guidance": "Please specify if your organisation will act as a data controller. If your organisation is not the sole data controller, please provide details of other data controllers.", + "question": "Will your organisation act as data controller?" + }, + { + "question": "CV", + "guidance": "Documents can be uploaded in the Additional Files section of this form.", + "lockedQuestion": 0, + "input": { + "label": "CV", + "type": "checkboxOptionsInput", + "options": [ + { + "value": "I have uploaded a CV for this person", + "text": "I have uploaded a CV for this person" + } ] + }, + "defaultQuestion": 1, + "questionId": "safepeopleprimaryapplicantuploadedcv" }, { - "questionSetId": "safedata-datafields", - "questionSetHeader": "Data fields", - "questions": [ - { - "questionId": "safedatadatafieldsdatarequiredjustification", - "input": { "type": "textareaInput" }, - "question": "Please indicate the data necessary to conduct the study, the data fields required and the justifications for each field.", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "questionId": "safedatadatafieldsfileuploaded", - "input": { - "options": [ - { - "value": "I confirm that I have enclosed a list of datasets, fields and variables required for the study as well as justification for each field.", - "text": "I confirm that I have enclosed a list of datasets, fields and variables required for the study as well as justification for each field." - } - ], - "label": "Data fields indicated via file upload", - "type": "checkboxOptionsInput" - }, - "question": "Data fields indicated via file upload", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "guidance": "A description of precisely the criteria which define the patients to be included and to be excluded from the data extract you are requesting should be provided. \n\nThis should include precise date parameters for the start and end of the range requested (dd/mm/yy) and explain which dated project field will be used to define the requested cohort (e.g. date of admission or date of operation).", - "questionId": "safedatadatafieldsinclusionexclusioncriteria", - "validations": [{ "type": "isLength", "message": "Please enter a value", "params": [{ "$numberDouble": "1.0" }] }], - "input": { "type": "textareaInput", "required": true }, - "question": "Inclusion and exclusion criteria (including date parameters)", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "question": "Will you require periodic refreshes of the data?", - "questionId": "safedatadatafieldsdatarefreshrequired", - "validations": [{ "message": "Please select an option", "type": "isLength", "params": [{ "$numberDouble": "1.0" }] }], - "input": { - "label": "Will you require periodic refreshes of the data?", - "type": "radioOptionsInput", - "required": true, - "options": [ - { - "conditionalQuestions": [ - { - "guidance": "Please indicate how often data refreshes will be needed.", - "questionId": "safedatadatafieldsdatarefreshrequiredperiodicity", - "input": { - "label": "How often will the data refreshes be needed?", - "type": "radioOptionsInput", - "options": [ - { "text": "Every month", "value": "Every month" }, - { "text": "Every 3 months", "value": "Every 3 months" }, - { "text": "Every 6 months", "value": "Every 6 months" }, - { "text": "Every 12 months", "value": "Every 12 months" }, - { - "text": "Other", - "value": "Other", - "conditionalQuestions": [ - { - "questionId": "safedatadatafieldsdatarefreshrequiredperiodicityotherdetails", - "input": { "type": "textInput" }, - "question": "If other, please specify" - } - ] - } - ] - }, - "question": "How often will the data refreshes be needed?" - } - ], - "value": "Yes", - "text": "Yes" - }, - { "value": "No", "text": "No" } - ] + "questionId": "safepeopleprimaryapplicantexperience", + "defaultQuestion": 1, + "input": { + "type": "textareaInput" + }, + "lockedQuestion": 0, + "question": "Please provide evidence of the primary applicant's expertise and experience relevant to delivering the project", + "guidance": "You must be able to demonstrate the team are qualified / experienced enough to work on the project. Applicants should provide qualifications as bona fide researcher(s) experienced in the use of large research datasets and provide evidence of their experience in their research field. " + } + ] + }, + { + "questionSetId": "safepeople-otherindividuals", + "questionSetHeader": "Other individuals", + "questions": [ + { + "questionId": "safepeopleotherindividualsfullname", + "defaultQuestion": 1, + "input": { + "type": "textInput" + }, + "lockedQuestion": 1, + "question": "Full name", + "guidance": "Full name is the individual's first and last name" + }, + { + "defaultQuestion": 1, + "questionId": "safepeopleotherindividualsjobtitle", + "guidance": "Job Title is the name of the position the individual holds within their organisation.", + "question": "Job title", + "input": { + "type": "textInput" + }, + "lockedQuestion": 1 + }, + { + "defaultQuestion": 1, + "questionId": "safepeopleotherindividualsorcid", + "guidance": "ORCID provides a persistent digital identifier (an ORCID iD) that you own and control, and that distinguishes you from every other researcher. You can create an ORCID profile at https://orcid.org/. If your collaborator has an ORCID iD please include it here.", + "question": "ORCID", + "lockedQuestion": 0, + "input": { + "type": "textInput" + } + }, + { + "questionId": "safepeopleotherindividualsorganisation", + "defaultQuestion": 1, + "input": { + "type": "textInput" + }, + "lockedQuestion": 0, + "guidance": "Please include the individual's organisation.", + "question": "Organisation" + }, + { + "questionId": "safepeopleotherindividualsrole", + "defaultQuestion": 1, + "input": { + "type": "checkboxOptionsInput", + "label": "Role", + "options": [ + { + "value": "Principal investigator", + "text": "Principal investigator" + }, + { + "text": "Collaborator", + "value": "Collaborator" + }, + { + "text": "Team member", + "conditionalQuestions": [ + { + "input": { + "type": "textareaInput" }, - "guidance": "Please indicate if data refreshes will be required.", - "lockedQuestion": 1, - "defaultQuestion": 0 - } + "question": "If other, please specify", + "questionId": "safepeopleotherindividualsroleotherdetails" + } + ], + "value": "Team member" + }, + { + "text": "Other", + "value": "Other" + } ] + }, + "lockedQuestion": 0, + "guidance": "A role is a function that the applicant plays. It might include role types and accreditation for those that are accessing the secure data and those that are not but would see cleared outputs from the project. \n (i.e. project lead, deputy lead, accrediter, researcher, peer reviewer)\n", + "question": "Role" }, { - "questions": [ - { + "guidance": "Please confirm whether this person will be accessing the resources being requested.", + "question": "Will this person access the data requested?", + "lockedQuestion": 1, + "input": { + "options": [ + { + "value": "Yes", + "text": "Yes", + "conditionalQuestions": [ + { + "questionId": "safepeopleotherindividualsaccreditedresearcherdetails", + "question": "If yes, please provide details", "input": { - "label": "Do you intend for the datasets requested to be linked with any additional datasets, other than the datasets listed in this application?", - "type": "radioOptionsInput", - "required": true, - "options": [ - { - "text": "Yes", - "value": "Yes", - "conditionalQuestions": [ - { - "input": { "type": "textareaInput" }, - "questionId": "safedataotherdatasetslinkadditionaldatasetslinkagedetails", - "question": "Specify all datasets, organisations which will perform the linkage and how the linkage will take place." - } - ] - }, - { "value": "No", "text": "No" } - ] + "type": "textareaInput" + } + } + ] + }, + { + "value": "No", + "text": "No" + } + ], + "type": "radioOptionsInput", + "label": "Will this person access the data requested?" + }, + "defaultQuestion": 1, + "questionId": "safepeopleotherindividualsaccessdata" + }, + { + "guidance": "Please confirm whether this person is an accredited researcher under the Digital Economy Act 2017 (https://www.legislation.gov.uk/ukpga/2017/30/contents/enacted).", + "question": "Is this person an accredited researcher under the Digital Economy Act 2017?", + "lockedQuestion": 0, + "input": { + "options": [ + { + "text": "Yes", + "value": "Yes", + "conditionalQuestions": [ + { + "questionId": "safepeopleotherindividualstraininginformationgovernancerecent", + "input": { + "type": "textareaInput" }, - "validations": [{ "type": "isLength", "message": "Please select an option", "params": [{ "$numberDouble": "1.0" }] }], - "questionId": "safedataotherdatasetslinkadditionaldatasets", - "question": "Do you intend for the datasets requested to be linked with any additional datasets, other than the datasets listed in this application?", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "questionId": "safedataotherdatasetsrisksmitigations", - "input": { "type": "textareaInput" }, - "question": "Please summarise the risks/mitigations considered.", - "lockedQuestion": 1, - "defaultQuestion": 0 - } + "question": "Please provide full details regarding the most recent training" + } + ] + }, + { + "text": "No", + "value": "No" + } ], - "questionSetId": "safedata-otherdatasetsintentiontolinkdata", - "questionSetHeader": "Other datasets - Intention to link data" + "label": "Is this person an accredited researcher under the Digital Economy Act 2017?", + "type": "radioOptionsInput" + }, + "defaultQuestion": 1, + "questionId": "safepeopleotherindividualsaccreditedresearcher" }, { - "questions": [ - { - "guidance": "The lawful basis for processing are set out in Article 6 of the GDPR. At least one legal basis must apply whenever you process personal data. Please select appropriate Article 6 lawful basis. Processing shall be lawful only if and to the extent that at least one of the following applies.", - "validations": [{ "params": [{ "$numberDouble": "1.0" }], "type": "isLength", "message": "Please select an option" }], + "questionId": "safepeopleotherindividualstraininginformationgovernance", + "defaultQuestion": 1, + "lockedQuestion": 0, + "input": { + "options": [ + { + "text": "Yes", + "value": "Yes", + "conditionalQuestions": [ + { + "questionId": "safepeopleotherindividualstraininginformationgovernanceintention", + "question": "Please provide any details of plans to attend training, if applicable", "input": { - "required": true, - "type": "radioOptionsInput", - "label": "Article 6 lawful basis", - "options": [ - { "text": "Not applicable", "value": "Not applicable" }, - { - "value": "(a) the data subject has given consent to the processing of his or her personal data for one or more specific purposes;", - "text": "(a) the data subject has given consent to the processing of his or her personal data for one or more specific purposes;" - }, - { - "value": "(b) processing is necessary for the performance of a contract to which the data subject is party or in order to take steps at the request of the data subject prior to entering into a contract;", - "text": "(b) processing is necessary for the performance of a contract to which the data subject is party or in order to take steps at the request of the data subject prior to entering into a contract;" - }, - { - "value": "(c) processing is necessary for compliance with a legal obligation to which the controller is subject;", - "text": "(c) processing is necessary for compliance with a legal obligation to which the controller is subject;" - }, - { - "value": "(d) processing is necessary in order to protect the vital interests of the data subject or of another natural person;", - "text": "(d) processing is necessary in order to protect the vital interests of the data subject or of another natural person;" - }, - { - "value": "(e) processing is necessary for the performance of a task carried out in the public interest or in the exercise of official authority vested in the controller;", - "text": "(e) processing is necessary for the performance of a task carried out in the public interest or in the exercise of official authority vested in the controller;" - }, - { - "value": "(f) processing is necessary for the purposes of the legitimate interests pursued by the controller or by a third party, except where such interests are overridden by the interests or fundamental rights and freedoms of the data subject which require protection of personal data, in particular where the data subject is a child.", - "text": "(f) processing is necessary for the purposes of the legitimate interests pursued by the controller or by a third party, except where such interests are overridden by the interests or fundamental rights and freedoms of the data subject which require protection of personal data, in particular where the data subject is a child." - } - ] + "type": "textareaInput" + } + } + ] + }, + { + "value": "No", + "text": "No" + } + ], + "label": "Has this person undertaken professional training or education on the topic of Information Governance?", + "type": "radioOptionsInput" + }, + "question": "Has this person undertaken professional training or education on the topic of Information Governance?", + "guidance": "Evidence of Information Governance training is an important aspect of most applications, giving assurance that individuals are aware of the privacy, confidentiality, data protection and Caldicott implications of working with personal data. \n\nPlease ensure you have checked with the data custodian what training is required for your application." + }, + { + "input": { + "label": "CV", + "type": "checkboxOptionsInput", + "options": [ + { + "text": "I have uploaded a CV for this person", + "value": "I have uploaded a CV for this person" + } + ] + }, + "lockedQuestion": 0, + "question": "CV", + "guidance": "Documents can be uploaded in the Additional Files section of this form.", + "questionId": "safepeopleotherindividualsuploadedcv", + "defaultQuestion": 1 + }, + { + "defaultQuestion": 1, + "questionId": "safepeopleotherindividualsexperience", + "guidance": "You must be able to demonstrate the team are qualified / experienced enough to work on the project. Applicants should provide qualifications as bona fide researcher(s) experienced in the use of large research datasets and provide evidence of their experience in their research field. ", + "question": "Please provide evidence of this person's expertise and experience relevant to delivering the project", + "lockedQuestion": 0, + "input": { + "type": "textareaInput" + } + } + ] + }, + { + "questions": [ + { + "lockedQuestion": 0, + "input": { + "panelId": "safepeople-otherindividuals", + "class": "btn btn-primary addButton", + "type": "buttonInput", + "text": "Add another individual?", + "action": "addRepeatableSection" + }, + "questionId": "add-safepeople-otherindividuals", + "defaultQuestion": 1 + } + ], + "questionSetId": "add-safepeople-otherindividuals" + }, + { + "questions": [ + { + "input": { + "options": [ + { + "value": "A new application", + "text": "A new application" + }, + { + "text": "An amendment to an existing application", + "conditionalQuestions": [ + { + "input": { + "type": "textareaInput" }, - "questionId": "safedatalawfulbasisgdprarticle6basis", - "question": "Article 6 lawful basis", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "guidance": "Please provide justification for selected Article 6 lawful basis.", - "validations": [{ "params": [{ "$numberDouble": "1.0" }], "message": "Please enter a value", "type": "isLength" }], - "input": { "type": "textareaInput", "required": true }, - "questionId": "safedatalawfulbasisgdprarticle6basisjustification", - "question": "Article 6 legal basis justification", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "guidance": "Please select appropriate Article 9 conditions. \n \nProcessing of personal data revealing racial or ethnic origin, political opinions, religious or philosophical beliefs, or trade union membership, and the processing of genetic data, biometric data for the purpose of uniquely identifying a natural person, data concerning health or data concerning a natural person's sex life or sexual orientation shall be prohibited. This does not apply if one of the following applies.", - "validations": [{ "params": [{ "$numberDouble": "1.0" }], "type": "isLength", "message": "Please select an option" }], - "questionId": "safedatalawfulbasisgdprarticle9conditions", - "input": { - "label": "Article 9 conditions", - "type": "radioOptionsInput", - "required": true, - "options": [ - { "text": "Not applicable", "value": "Not applicable" }, - { - "value": "(a) the data subject has given explicit consent to the processing of those personal data for one or more specified purposes, except where Union or Member State law provide that the prohibition referred to in paragraph 1 may not be lifted by the data subject;", - "text": "(a) the data subject has given explicit consent to the processing of those personal data for one or more specified purposes, except where Union or Member State law provide that the prohibition referred to in paragraph 1 may not be lifted by the data subject;" - }, - { - "value": "(b) processing is necessary for the purposes of carrying out the obligations and exercising specific rights of the controller or of the data subject in the field of employment and social security and social protection law in so far as it is authorised by Union or Member State law or a collective agreement pursuant to Member State law providing for appropriate safeguards for the fundamental rights and the interests of the data subject;", - "text": "(b) processing is necessary for the purposes of carrying out the obligations and exercising specific rights of the controller or of the data subject in the field of employment and social security and social protection law in so far as it is authorised by Union or Member State law or a collective agreement pursuant to Member State law providing for appropriate safeguards for the fundamental rights and the interests of the data subject;" - }, - { - "text": "(c) processing is necessary to protect the vital interests of the data subject or of another natural person where the data subject is physically or legally incapable of giving consent;", - "value": "(c) processing is necessary to protect the vital interests of the data subject or of another natural person where the data subject is physically or legally incapable of giving consent;" - }, - { - "text": "(d) processing is carried out in the course of its legitimate activities with appropriate safeguards by a foundation, association or any other not-for-profit body with a political, philosophical, religious or trade union aim and on condition that the processing relates solely to the members or to former members of the body or to persons who have regular contact with it in connection with its purposes and that the personal data are not disclosed outside that body without the consent of the data subjects;", - "value": "(d) processing is carried out in the course of its legitimate activities with appropriate safeguards by a foundation, association or any other not-for-profit body with a political, philosophical, religious or trade union aim and on condition that the processing relates solely to the members or to former members of the body or to persons who have regular contact with it in connection with its purposes and that the personal data are not disclosed outside that body without the consent of the data subjects;" - }, - { - "text": "(e) processing relates to personal data which are manifestly made public by the data subject;", - "value": "(e) processing relates to personal data which are manifestly made public by the data subject;" - }, - { - "text": "(f) processing is necessary for the establishment, exercise or defence of legal claims or whenever courts are acting in their judicial capacity;", - "value": "(f) processing is necessary for the establishment, exercise or defence of legal claims or whenever courts are acting in their judicial capacity;" - }, - { - "text": "(g) processing is necessary for reasons of substantial public interest, on the basis of Union or Member State law which shall be proportionate to the aim pursued, respect the essence of the right to data protection and provide for suitable and specific measures to safeguard the fundamental rights and the interests of the data subject;", - "value": "(g) processing is necessary for reasons of substantial public interest, on the basis of Union or Member State law which shall be proportionate to the aim pursued, respect the essence of the right to data protection and provide for suitable and specific measures to safeguard the fundamental rights and the interests of the data subject;" - }, - { - "text": "(h) processing is necessary for the purposes of preventive or occupational medicine, for the assessment of the working capacity of the employee, medical diagnosis, the provision of health or social care or treatment or the management of health or social care systems and services on the basis of Union or Member State law or pursuant to contract with a health professional and subject to the conditions and safeguards referred to in paragraph 3;", - "value": "(h) processing is necessary for the purposes of preventive or occupational medicine, for the assessment of the working capacity of the employee, medical diagnosis, the provision of health or social care or treatment or the management of health or social care systems and services on the basis of Union or Member State law or pursuant to contract with a health professional and subject to the conditions and safeguards referred to in paragraph 3;" - }, - { - "value": "(i) processing is necessary for reasons of public interest in the area of public health, such as protecting against serious cross-border threats to health or ensuring high standards of quality and safety of health care and of medicinal products or medical devices, on the basis of Union or Member State law which provides for suitable and specific measures to safeguard the rights and freedoms of the data subject, in particular professional secrecy;", - "text": "(i) processing is necessary for reasons of public interest in the area of public health, such as protecting against serious cross-border threats to health or ensuring high standards of quality and safety of health care and of medicinal products or medical devices, on the basis of Union or Member State law which provides for suitable and specific measures to safeguard the rights and freedoms of the data subject, in particular professional secrecy;" - }, + "question": "Reference or details of previous application", + "guidance": "Please provide the UK Health Research Authority Research Ethics Service reference. If not a research study please provide references or details of previous application. ", + "questionId": "safeprojectaboutthisapplicationtypeamendmentdetails" + } + ], + "value": "An amendment to an existing application" + }, + { + "text": "An extension of an existing approval", + "value": "An extension of an existing approval", + "conditionalQuestions": [ + { + "questionId": "safeprojectaboutthisapplicationtypeextensiondetails", + "question": "Reference or details of previous application", + "guidance": "Please provide the UK Health Research Authority Research Ethics Service reference. If not a research study please provide references or details of previous application. ", + "input": { + "type": "textareaInput" + } + } + ] + }, + { + "text": "A renewal of an existing approval", + "value": "A renewal of an existing approval", + "conditionalQuestions": [ + { + "input": { + "type": "textareaInput" + }, + "guidance": "Please provide the UK Health Research Authority Research Ethics Service reference. If not a research study please provide references or details of previous application. ", + "question": "Reference or details of previous application", + "questionId": "safeprojectaboutthisapplicationtyperenewaldetails" + } + ] + }, + { + "value": "Related to a previous application (approved or not)", + "conditionalQuestions": [ + { + "questionId": "safeprojectaboutthisapplicationtyperelatedpreviousdetails", + "question": "Reference or details of previous application", + "guidance": "Please provide the UK Health Research Authority Research Ethics Service reference. If not a research study please provide references or details of previous application. ", + "input": { + "type": "textareaInput" + } + } + ], + "text": "Related to a previous application (approved or not)" + } + ], + "label": "This application is...", + "type": "radioOptionsInput" + }, + "lockedQuestion": 1, + "guidance": "The application could be a new application, an extension, a renewal or amendment. For extensions or amendments, you must highlight the specific information within this form that has been updated, provide an original application number and approval date, any subsequent amendment approval dates and a summary of changes and rationale for the change to your original application and updated approvals signatures in order for the request to be processed.", + "question": "This application is...", + "questionId": "safeprojectaboutthisapplicationtype", + "defaultQuestion": 1 + } + ], + "questionSetId": "safeproject-aboutthisapplication", + "questionSetHeader": "About this application" + }, + { + "questions": [ + { + "defaultQuestion": 1, + "guidance": "The title should identify the main area of your research so that another researcher could understand if it might be relevant to their area of study. \n", + "lockedQuestion": 1, + "validations": [ + { + "type": "isLength", + "params": [ + 3, + 300 + ] + } + ], + "questionId": "safeprojectprojectdetailstitle", + "question": "Title of project", + "input": { + "type": "textInput", + "required": true + } + }, + { + "input": { + "label": "What is the type of project?", + "type": "radioOptionsInput", + "required": true, + "options": [ + { + "value": "Research", + "text": "Research" + }, + { + "text": "Clinic audit", + "value": "Clinic audit" + }, + { + "value": "Service evaluation", + "text": "Service evaluation" + }, + { + "value": "Other", + "conditionalQuestions": [ + { + "questionId": "safeprojectprojectdetailstypeotherdetails", + "question": "If other, please specify", + "input": { + "type": "textInput" + } + } + ], + "text": "Other" + } + ] + }, + "validations": [ + { + "type": "isLength", + "params": [ + 1 + ], + "message": "Please select an option" + } + ], + "lockedQuestion": 1, + "guidance": "A research project is a discrete scientific endeavour to answer a research question or a set of research questions. \n\nA clinic audit project is designed and conducted to produce information to inform delivery of best care. It aims to find out if healthcare is being provided in line with standards to inform care providers and patients about where a service is doing well, and where there could be improvements.\n\nA service evaluation project is designed and conducted solely to define or judge current care. It seeks to assess current service to assess how well a service is achieving its intended aims.", + "question": "What is the type of project?", + "questionId": "safeprojectprojectdetailstype", + "defaultQuestion": 1 + }, + { + "lockedQuestion": 0, + "input": { + "label": "Is this a new study or supporting an existing project?", + "type": "radioOptionsInput", + "options": [ + { + "text": "New project", + "value": "New project" + }, + { + "conditionalQuestions": [ + { + "question": "Evidence of existing outputs", + "input": { + "options": [ + { + "value": "I have enclosed evidence of existing outputs", + "text": "I have enclosed evidence of existing outputs" + } + ], + "type": "checkboxOptionsInput" + }, + "questionId": "safeprojectprojectdetailsneworexistingexistingoutputevidence", + "label": "Evidence of existing outputs" + } + ], + "value": "Existing project", + "text": "Existing project" + } + ] + }, + "question": "Is this a new study or supporting an existing project?", + "questionId": "safeprojectprojectdetailsneworexisting", + "defaultQuestion": 1, + "guidance": "" + }, + { + "question": "Has the hypothesis being investigated been commissioned by the NHS?", + "lockedQuestion": 0, + "input": { + "label": "Has the hypothesis being investigated been commissioned by the NHS?", + "type": "radioOptionsInput", + "options": [ + { + "text": "Yes", + "conditionalQuestions": [ + { + "question": "If yes, please provide details of the commission and any peer review to date. (100 words)", + "validations": [ + { + "params": [ + 10, + 700 + ], + "type": "isLength" + } + ], + "input": { + "type": "textareaInput" + }, + "questionId": "safeprojectprojectdetailshypothesiscomissionednhsdetails" + } + ], + "value": "Yes" + }, + { + "text": "No", + "value": "No" + } + ] + }, + "defaultQuestion": 1, + "questionId": "safeprojectprojectdetailshypothesiscomissionednhs", + "guidance": "" + }, + { + "defaultQuestion": 1, + "guidance": "Please provide a summary of the project in language suitable for non-experts in the field and ensure that all abbreviations in technical terminology are explained. Do not include any confidential or sensitive information in this section as this section may be used to publicise the project if the application is successful.\n\nThe summary must make clear what the specific purpose is, who will be using the data (organisations rather than individual names), what will happen to the data, whether the expected outputs are in record level form, what is known to date about your chosen project including any preliminary/related analysis and background literature reviews. Please include any potential disclosure risks and how these will be addressed.", + "lockedQuestion": 1, + "validations": [ + { + "type": "isLength", + "params": [ + 10, + 2000 + ] + } + ], + "questionId": "safeprojectprojectdetailslaysummary", + "question": "Please provide a lay summary of the project (300 words)", + "input": { + "type": "textareaInput", + "required": true + } + }, + { + "questionId": "safeproject-projectdetails-startdate", + "defaultQuestion": 1, + "input": { + "type": "datePickerCustom" + }, + "validations": [ + { + "type": "isCustomDate" + } + ], + "lockedQuestion": 0, + "question": "What is the anticipated start date of the project?", + "guidance": "" + }, + { + "question": "Please provide anticipated end date of the project?", + "lockedQuestion": 0, + "input": { + "type": "datePickerCustom" + }, + "validations": [ + { + "type": "isCustomDate" + } + ], + "defaultQuestion": 1, + "questionId": "safeproject-projectdetails-enddate", + "guidance": "" + }, + { + "input": { + "type": "textareaInput", + "required": true + }, + "validations": [ + { + "message": "Please enter a value", + "type": "isLength", + "params": [ + 1 + ] + } + ], + "lockedQuestion": 1, + "guidance": "Please include background to the project, including why the project is being undertaken and the specific aims and the hypotheses being tested. Summarise how the data requested are required to help address these aims. Please include whether any aspect of the project has been peer reviewed and if applicable, the nature of that review. ", + "question": "What are the project aims, objectives and rationale?", + "questionId": "safeprojectprojectdetailsaimsobjectivesrationale", + "defaultQuestion": 1 + }, + { + "questionId": "safeprojectprojectdetailsdatausageforobjectives", + "defaultQuestion": 1, + "lockedQuestion": 1, + "validations": [ + { + "message": "Please enter a value", + "params": [ + 1 + ], + "type": "isLength" + } + ], + "input": { + "required": true, + "type": "textareaInput" + }, + "guidance": "Provide full details of your research methodology. This must include justification of sample size, analyses proposed, statistical methods, additional data sources such as linked data and any plans for collaborative work. \n\nThis information will be key to assessing whether your proposal will be feasible, deliver clear public good and be an appropriate use of data. \n\nEnsure you: \n\nSpecify the method(s) of analysis you plan to use (such as regression);\n\nAs far as possible, try to articulate the outcome or dependent variable(s). \n\nIndicate the starting point for the modelling process - acknowledging that the model may evolve.\n\nExplain (where relevant) how any potential selection/causal bias will be addressed (e.g. by including a control group with information on how this control group will be created); \n\nProvide methodology references, if a non-standard methodology is proposed;\n\nInclude information about any contribution to the field of research methodology that you believe may result from your research;\n\nInclude an explanation of how your methodological approach will answer the research question(s) set out in the project when employing methods not covered by any of the above (e.g. correlation or basic descriptive analysis will only be used, noting that such analysis might be more applicable for exploratory research).", + "question": "How will the data requested be used to achieve the project objectives?" + }, + { + "questionId": "safeprojectprojectdetailspublicbenefitimpacttype", + "defaultQuestion": 1, + "lockedQuestion": 1, + "input": { + "options": [ + { + "value": "Further understanding of the health and care needs of populations", + "text": "Further understanding of the health and care needs of populations" + }, + { + "text": "Lead to the identification and progress of treatments and therapies to improve health", + "value": "Lead to the identification and progress of treatments and therapies to improve health" + }, + { + "text": "Further understanding of regional and national trends in health and social care needs", + "value": "Further understanding of regional and national trends in health and social care needs" + }, + { + "text": "Inform planning health services and programmes", + "value": "Inform planning health services and programmes" + }, + { + "text": "Inform decisions on how to effectively allocate and evaluate funding according to health needs?", + "value": "Inform decisions on how to effectively allocate and evaluate funding according to health needs?" + }, + { + "text": "Further knowledge creation or support exploratory research and the innovations and developments that might result from that exploratory work.", + "value": "Further knowledge creation or support exploratory research and the innovations and developments that might result from that exploratory work." + }, + { + "value": "Other", + "text": "Other" + } + ], + "type": "checkboxOptionsInput", + "label": "How will you demonstrate that use of the data requested will deliver public benefit? Please select all that apply." + }, + "question": "How will you demonstrate that use of the data requested will deliver public benefit? Please select all that apply.", + "guidance": "The concept of public benefit is broad and flexible, and could include direct, indirect and long-term benefits. However, the benefit needs to be identifiable regardless of whether it can be quantified or measured. Please select at least one of the options provided to indicate how you would determine whether the use of requested data is for public benefit.\n\n---\n\n\n**This guidance is aligned with: ** \n\n\n![Test image](https://storage.googleapis.com/hdruk-gateway_non-prod-cms/web-assets/NDG-logo-small.png)" + }, + { + "guidance": "Use this section to give the background and justification of your proposal, to demonstrate how your project will benefit the public, as well as show your understanding of the Information Governance issues specific and inherent to your project. Please make it clear how the data requested will contribute. \n\nPlease also show that you have considered how to balance the privacy risks and public benefits when designing the study. The requirement for the datasets requested should be fully justified in the light of the aims and objectives of the proposal.\n", + "question": "Please provide details to justify your selection above.", + "input": { + "type": "textareaInput" + }, + "lockedQuestion": 0, + "defaultQuestion": 1, + "questionId": "safeprojectprojectdetailspublicbenefitimpact" + }, + { + "input": { + "type": "textareaInput" + }, + "lockedQuestion": 0, + "question": "Provide an outline of the public and patient involvement and engagement (PPIE*) strategy for the study, OR a brief explanation as to why this is not required.", + "guidance": "Provide full details of proposed public engagement plans for patient and/or user group involvement. If you have no public engagement plans, please explain why this is the case.", + "questionId": "safeprojectprojectdetailspublicpatientinvolvementengagement", + "defaultQuestion": 1 + }, + { + "defaultQuestion": 1, + "questionId": "safeprojectprojectdetailsindividualprivacyriskmitigation", + "question": "Do you anticipate any risk to individuals, and if so what steps have you made in your proposal to mitigate these?", + "guidance": "A data use purpose cannot be considered as beneficial if the harm resulting from the use of the data outweighs the public benefit. Please demonstrate that you have considered how to balance the risks and public benefits when designing the study.\n\nPlease consider:\n\n- Could individual patient privacy be compromised?\n- Could patient or service user safety be harmed? \n- If data was to be used for this purpose, could it make some patients or service users less likely to seek care or be less frank in discussion with health and care professionals? \n- Could the purpose lead to the creation or exacerbation of inequalities or unlawful discrimination against particular communities? \n- Could the use of inaccurate or inadequate health and social care data lead to unrepresentative findings? \n- Could the purpose undermine the sustainability of publicly funded health or adult social care services? \n\n---\n\n\n**This guidance is aligned with: ** \n\n\n![Test image](https://storage.googleapis.com/hdruk-gateway_non-prod-cms/web-assets/NDG-logo-small.png)", + "input": { + "type": "textareaInput" + }, + "lockedQuestion": 1 + }, + { + "lockedQuestion": 0, + "input": { + "type": "textareaInput" + }, + "question": "In considering your proposal, do you believe it could disadvantage any group or individual? Explain what steps you have taken to avoid this.", + "questionId": "safeprojectprojectdetailsgroupindividualdisavantageavoidance", + "defaultQuestion": 1, + "guidance": "" + }, + { + "input": { + "type": "textareaInput" + }, + "lockedQuestion": 0, + "question": "Please provide up to 6 keywords which best summarise your proposed research project.", + "questionId": "safeprojectprojectdetailsresearchprojectsummarykeywords", + "defaultQuestion": 1, + "guidance": "" + }, + { + "lockedQuestion": 0, + "input": { + "label": "Please indicate whether the proposed project will enhance future benefits of our dataset, and describe any expected benefits", + "type": "radioOptionsInput", + "options": [ + { + "text": "Yes", + "value": "Yes", + "conditionalQuestions": [ + { + "questionId": "safeprojectprojectdetailsresearchprojectfuturedatabasebenefit", + "question": "If yes, please provide details", + "input": { + "type": "textareaInput" + } + } + ] + }, + { + "text": "No", + "value": "No" + } + ] + }, + "question": "Please indicate whether the proposed project will enhance future benefits of our dataset, and describe any expected benefits", + "questionId": "safeprojectprojectdetailsresearchprojectfuturedatabasebenefityesorno", + "defaultQuestion": 1, + "guidance": "" + } + ], + "questionSetHeader": "Project details", + "questionSetId": "safeproject-projectdetails" + }, + { + "questionSetHeader": "Funder information", + "questionSetId": "safeproject-funderinformation", + "questions": [ + { + "lockedQuestion": 1, + "input": { + "options": [ + { + "text": "Yes", + "value": "Yes", + "conditionalQuestions": [ + { + "questionId": "safeprojectfunderinformationprojecthasfundername", + "input": { + "type": "textInput" + }, + "guidance": "Please confirm funder organisation name.", + "question": "Please provide the organisation name" + }, + { + "questionId": "add-safeproject-funderinformation", + "input": { + "text": "Add another organisation?", + "action": "addRepeatableQuestions", + "class": "btn btn-primary addButton", + "separatorText": "Organisation Details", + "type": "buttonInput", + "questionIds": [ + "safeprojectfunderinformationprojecthasfundername" + ] + } + } + ] + }, + { + "value": "No", + "conditionalQuestions": [ + { + "questionId": "safeprojectfunderinformationprojecthasnofunderfundingsource", + "input": { + "type": "textareaInput" + }, + "question": "If no, please provide details of how you intend to fund the study" + }, + { + "question": "Please provide evidence of independent peer review", + "guidance": "Documents can be uploaded in the Additional Files section of this form.", + "input": { + "options": [ + { + "text": "I confirm I have provided evidence of independent peer review.", + "value": "I confirm I have provided evidence of independent peer review." + } + ], + "type": "checkboxOptionsInput" + }, + "label": "Please provide evidence of independent peer review", + "questionId": "safeprojectfunderinformationprojecthasnofunderindependentpeerreviewevidence" + } + ], + "text": "No" + } + ], + "required": true, + "type": "radioOptionsInput", + "label": "Does your project have a funder?" + }, + "validations": [ + { + "type": "isLength", + "params": [ + 1 + ], + "message": "Please select an option" + } + ], + "question": "Does your project have a funder?", + "guidance": "Please confirm if your project has a funder.", + "questionId": "safeprojectfunderinformationprojecthasfunder", + "defaultQuestion": 1 + } + ] + }, + { + "questionSetId": "safeproject-sponsorinformation", + "questionSetHeader": "Sponsor information", + "questions": [ + { + "guidance": "Please confirm if your project has a sponsor.", + "question": "Does your project have a sponsor?", + "input": { + "required": true, + "options": [ + { + "conditionalQuestions": [ + { + "question": "Associated applicant", + "input": { + "type": "textInput" + }, + "questionId": "safeprojectsponsorinformationprojecthassponsorapplicant" + }, + { + "questionId": "safeprojectsponsorinformationprojecthassponsororganisationname", + "question": "Organisation name", + "guidance": "Please provide legal name; to appear on legal documents.", + "input": { + "type": "textInput" + } + }, + { + "questionId": "safeprojectsponsorinformationprojecthassponsororganisationaddressline1", + "input": { + "type": "textInput" + }, + "guidance": "Please confirm sponsor organisation address.", + "question": "Registered address (line 1)" + }, + { + "questionId": "safeprojectsponsorinformationprojecthassponsororganisationaddressline2", + "input": { + "type": "textInput" + }, + "guidance": "Please confirm sponsor organisation address.", + "question": "Registered address (line 2)" + }, + { + "questionId": "safeprojectsponsorinformationprojecthassponsororganisationcity", + "input": { + "type": "textInput" + }, + "question": "City", + "guidance": "Please confirm sponsor organisation city." + }, + { + "questionId": "safeprojectsponsorinformationprojecthassponsororganisationpostcode", + "question": "Postcode", + "guidance": "Please confirm sponsor organisation postcode.", + "input": { + "type": "textInput" + } + }, + { + "question": "Country", + "guidance": "Please confirm sponsor organisation's country.", + "input": { + "type": "textInput" + }, + "questionId": "safeprojectsponsorinformationprojecthassponsororganisationcountry" + }, + { + "question": "Sector", + "guidance": "Please provide details of the sponsor's sector e.g. NHS, Academia, Charity, Industry.", + "input": { + "type": "textInput" + }, + "questionId": "safeprojectsponsorinformationprojecthassponsororganisationsector" + }, + { + "questionId": "safeprojectsponsorinformationprojecthassponsororganisationsize", + "guidance": "Please specify the size of the organisation (small, medium, large).", + "question": "Size", + "input": { + "type": "textInput" + } + }, + { + "input": { + "type": "textInput" + }, + "guidance": "Please provide additional details, if applicable.", + "question": "Additional details", + "questionId": "safeprojectsponsorinformationprojecthassponsororganisationadditionaldetails" + }, + { + "questionId": "safeprojectsponsorinformationprojecthassponsorcontactfullname", + "question": "Contact full name", + "input": { + "type": "textInput" + } + }, + { + "questionId": "safeprojectsponsorinformationprojecthassponsorcontactemail", + "question": "Contact email address", + "guidance": "Please provide a contact email address for the sponsor organisation", + "input": { + "type": "textInput" + } + }, + { + "input": { + "type": "textInput" + }, + "question": "Contact telephone", + "questionId": "safeprojectsponsorinformationprojecthassponsorcontacttelephone" + }, + { + "questionId": "add-safeproject-sponsorinformation", + "input": { + "class": "btn btn-primary addButton", + "action": "addRepeatableQuestions", + "text": "Add another organisation?", + "separatorText": "Organisation Details", + "questionIds": [ + "safeprojectsponsorinformationprojecthassponsorapplicant", + "safeprojectsponsorinformationprojecthassponsororganisationname", + "safeprojectsponsorinformationprojecthassponsororganisationaddressline1", + "safeprojectsponsorinformationprojecthassponsororganisationaddressline2", + "safeprojectsponsorinformationprojecthassponsororganisationcity", + "safeprojectsponsorinformationprojecthassponsororganisationpostcode", + "safeprojectsponsorinformationprojecthassponsororganisationcountry", + "safeprojectsponsorinformationprojecthassponsororganisationsector", + "safeprojectsponsorinformationprojecthassponsororganisationsize", + "safeprojectsponsorinformationprojecthassponsororganisationadditionaldetails", + "safeprojectsponsorinformationprojecthassponsorcontactfullname", + "safeprojectsponsorinformationprojecthassponsorcontactemail", + "safeprojectsponsorinformationprojecthassponsorcontacttelephone" + ], + "type": "buttonInput" + } + } + ], + "value": "Yes", + "text": "Yes" + }, + { + "value": "No", + "text": "No" + } + ], + "type": "radioOptionsInput", + "label": "Does your project have a sponsor?" + }, + "validations": [ + { + "message": "Please select an option", + "type": "isLength", + "params": [ + 1 + ] + } + ], + "lockedQuestion": 1, + "defaultQuestion": 1, + "questionId": "safeprojectsponsorinformationprojecthassponsor" + } + ] + }, + { + "questions": [ + { + "questionId": "safeprojectdeclarationofinteresthascommercialinterest", + "defaultQuestion": 1, + "input": { + "type": "radioOptionsInput", + "label": "Is there a commercial interest in this project?", + "options": [ + { + "text": "Yes", + "value": "Yes", + "conditionalQuestions": [ + { + "questionId": "safeprojectdeclarationofinteresthascommercialinterestorganisationname", + "question": "Organisation name", + "guidance": "Please confirm organisation name.", + "input": { + "type": "textInput" + } + }, + { + "questionId": "safeprojectdeclarationofinteresthascommercialinterestorganisationaddressline1", + "input": { + "type": "textInput" + }, + "question": "Registered address (line 1)", + "guidance": "Please confirm organisation address." + }, + { + "questionId": "safeprojectdeclarationofinteresthascommercialinterestorganisationaddressline2", + "question": "Registered address (line 2)", + "input": { + "type": "textInput" + } + }, + { + "questionId": "safeprojectdeclarationofinteresthascommercialinterestorganisationpostcode", + "input": { + "type": "textInput" + }, + "guidance": "Please confirm organisation postcode.", + "question": "Postcode" + }, + { + "questionId": "safeprojectdeclarationofinteresthascommercialinterestorganisationcity", + "input": { + "type": "textInput" + }, + "question": "City", + "guidance": "Please confirm organisation city." + }, + { + "input": { + "type": "textInput" + }, + "guidance": "Please confirm organisation country.", + "question": "Country", + "questionId": "safeprojectdeclarationofinteresthascommercialinterestorganisationcountry" + }, + { + "questionId": "safeprojectdeclarationofinteresthascommercialinterestinterestnature", + "input": { + "type": "textareaInput" + }, + "question": "Describe the nature of interest" + }, + { + "label": "Public interest", + "questionId": "safeprojectdeclarationofinteresthascommercialinterestconfirmpublicinterest", + "question": "Public interest", + "input": { + "options": [ + { + "value": "I confirm that any commercial interest is public interest related.", + "text": "I confirm that any commercial interest is public interest related." + } + ], + "type": "checkboxOptionsInput" + } + }, + { + "questionId": "add-safeproject-declarationofinterest", + "input": { + "class": "btn btn-primary addButton", + "text": "Add another organisation?", + "action": "addRepeatableQuestions", + "questionIds": [ + "safeprojectdeclarationofinteresthascommercialinterestorganisationname", + "safeprojectdeclarationofinteresthascommercialinterestorganisationaddressline1", + "safeprojectdeclarationofinteresthascommercialinterestorganisationaddressline2", + "safeprojectdeclarationofinteresthascommercialinterestorganisationpostcode", + "safeprojectdeclarationofinteresthascommercialinterestorganisationcity", + "safeprojectdeclarationofinteresthascommercialinterestorganisationcountry", + "safeprojectdeclarationofinteresthascommercialinterestinterestnature", + "safeprojectdeclarationofinteresthascommercialinterestconfirmpublicinterest" + ], + "type": "buttonInput", + "separatorText": "Organisation Details" + } + } + ] + }, + { + "value": "No", + "text": "No" + } + ], + "required": true + }, + "validations": [ + { + "message": "Please select an option", + "type": "isLength", + "params": [ + 1 + ] + } + ], + "lockedQuestion": 1, + "guidance": "Please indicate if there is any commercial aspect or dimension to the project or its outcomes.", + "question": "Is there a commercial interest in this project?" + } + ], + "questionSetHeader": "Declaration of interest", + "questionSetId": "safeproject-declarationofinterest" + }, + { + "questions": [ + { + "guidance": "Intellectual Property is the tangible output of any intellectual activity that is new or previously undescribed. It has an owner; it can be bought, sold or licensed and must be adequately protected. It can include inventions, industrial processes, software, data, written work, designs and images. \nAny research which could potentially lead to intellectual property rights for you or your employer should be discussed with your employer and your R&D office as early as possible in the planning of the research.", + "question": "Please indicate if the research could lead to the development of a new product/process or the generation of intellectual property.", + "input": { + "type": "textareaInput" + }, + "lockedQuestion": 0, + "defaultQuestion": 1, + "questionId": "safeprojectintellectualpropertydevelopmentnewproductprocess" + } + ], + "questionSetHeader": "Intellectual property", + "questionSetId": "safeproject-intellectualproperty" + }, + { + "questions": [ + { + "lockedQuestion": 1, + "validations": [ + { + "type": "isLength", + "params": [ + 1 + ], + "message": "Please enter a value" + } + ], + "input": { + "required": true, + "type": "textareaInput" + }, + "question": "Please indicate the data necessary to conduct the study, the data fields required and the justifications for each field.", + "guidance": "Please list and make clear the details on the information from each dataset that you would like to have access to.\n\nYou can either upload a file including all data fields, variables and justification for each field/variable or use the free text box. Documents can be uploaded in the Additional Files section of this form.\n\nData requested can only be provided for processing data for specific purpose so you should ensure you explain why each dataset is required to meet your project objectives. Please ensure you have discussed your requirements with the data custodian.\n\nPlease justify why you need each requested dataset to ensure that the appropriateness, proportionality and risk associated can be carefully considered.\nIf you are requesting identifiable or potentially identifiable variables, please justify why you need each variable.\n\nPlease also include year/release of the datasets you propose to access.", + "questionId": "safedatadatafieldsdatarequiredjustification", + "defaultQuestion": 1 + }, + { + "input": { + "type": "checkboxOptionsInput", + "label": "Data fields indicated via file upload", + "options": [ + { + "text": "I confirm that I have enclosed a list of datasets, fields and variables required for the study as well as justification for each field.", + "value": "I confirm that I have enclosed a list of datasets, fields and variables required for the study as well as justification for each field." + } + ] + }, + "lockedQuestion": 0, + "guidance": "Documents can be uploaded in the Additional Files section of this form.", + "question": "Data fields indicated via file upload", + "questionId": "safedatadatafieldsfileuploaded", + "defaultQuestion": 1 + }, + { + "question": "Inclusion and exclusion criteria (including date parameters)", + "guidance": "A description of precisely the criteria which define the patients to be included and to be excluded from the data extract you are requesting should be provided. \n\nThis should include precise date parameters for the start and end of the range requested (dd/mm/yy) and explain which dated project field will be used to define the requested cohort (e.g. date of admission or date of operation).\n", + "input": { + "type": "textareaInput" + }, + "lockedQuestion": 0, + "defaultQuestion": 1, + "questionId": "safedatadatafieldsinclusionexclusioncriteria" + }, + { + "questionId": "safedatadatafieldsdatarefreshrequired", + "defaultQuestion": 1, + "input": { + "options": [ + { + "value": "Yes", + "conditionalQuestions": [ + { + "questionId": "safedatadatafieldsdatarefreshrequiredperiodicity", + "question": "How often will the data refreshes be needed?", + "guidance": "Please indicate how often data refreshes will be needed. ", + "input": { + "type": "radioOptionsInput", + "label": "How often will the data refreshes be needed?", + "options": [ + { + "text": "Every month", + "value": "Every month" + }, + { + "value": "Every 3 months", + "text": "Every 3 months" + }, + { + "value": "Every 6 months", + "text": "Every 6 months" + }, + { + "text": "Every 12 months", + "value": "Every 12 months" + }, + { + "text": "Other", + "value": "Other", + "conditionalQuestions": [ { - "value": "(j) processing is necessary for archiving purposes in the public interest, scientific or historical research purposes or statistical purposes in accordance with Article 89(1) based on Union or Member State law which shall be proportionate to the aim pursued, respect the essence of the right to data protection and provide for suitable and specific measures to safeguard the fundamental rights and the interests of the data subject.", - "text": "(j) processing is necessary for archiving purposes in the public interest, scientific or historical research purposes or statistical purposes in accordance with Article 89(1) based on Union or Member State law which shall be proportionate to the aim pursued, respect the essence of the right to data protection and provide for suitable and specific measures to safeguard the fundamental rights and the interests of the data subject." + "input": { + "type": "textInput" + }, + "question": "If other, please specify", + "questionId": "safedatadatafieldsdatarefreshrequiredperiodicityotherdetails" } - ] + ] + } + ] + } + } + ], + "text": "Yes" + }, + { + "text": "No", + "value": "No" + } + ], + "type": "radioOptionsInput", + "label": "Will you require periodic refreshes of the data?" + }, + "lockedQuestion": 0, + "question": "Will you require periodic refreshes of the data?", + "guidance": "Please indicate if data refreshers will be required." + }, + { + "questionId": "safedatadatafieldsgeographicalcoverage", + "defaultQuestion": 1, + "lockedQuestion": 0, + "input": { + "type": "checkboxOptionsInput", + "label": "Geographical coverage of datasets requested", + "options": [ + { + "text": "England", + "value": "England" + }, + { + "value": "Wales", + "text": "Wales" + }, + { + "text": "Scotland", + "value": "Scotland" + }, + { + "value": "Northern Ireland", + "text": "Northern Ireland" + }, + { + "value": "Other", + "conditionalQuestions": [ + { + "question": "If other, please specify", + "input": { + "type": "textInput" }, - "question": "Article 9 conditions", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "question": "Article 9 legal basis justification", - "guidance": "Please provide justification for selected Article 9 conditions.", - "questionId": "safedatalawfulbasisgdprarticle9basisjustification", - "validations": [{ "message": "Please enter a value", "type": "isLength", "params": [{ "$numberDouble": "1.0" }] }], - "input": { "type": "textareaInput", "required": true }, - "lockedQuestion": 1, - "defaultQuestion": 0 - } + "questionId": "safedatadatafieldsgeographicalcoverageotherdetails" + } + ], + "text": "Other" + } + ] + }, + "guidance": "Please indicate geographical coverage of the datasets requested. ", + "question": "Geographical coverage of datasets requested" + }, + { + "defaultQuestion": 1, + "questionId": "safedatadatafieldsindividualidentifiers", + "guidance": "Please indicate whether you will be requiring data that contains individual identifiers.\n\nPersonal data means any information relating to an identified or identifiable natural person (‘data subject’); an identifiable natural person is one who can be identified, directly or indirectly, in particular by reference to an identifier such as a name, an identification number, location data, an online identifier or to one or more factors specific to the physical, physiological, genetic, mental, economic, cultural or social identity of that natural person. ", + "question": "Are you requesting data that contains individual identifiers?", + "lockedQuestion": 0, + "input": { + "options": [ + { + "text": "Not applicable", + "value": "Not applicable" + }, + { + "text": "Yes", + "value": "Yes" + }, + { + "value": "No", + "conditionalQuestions": [ + { + "questionId": "safedatadatafieldsindividualidentifiersanonymousdata", + "input": { + "options": [ + { + "value": "Not applicable", + "text": "Not applicable" + }, + { + "value": "Yes", + "text": "Yes" + }, + { + "text": "No", + "value": "No" + } + ], + "type": "radioOptionsInput", + "label": "Are you requesting anonymous data?" + }, + "question": "Are you requesting anonymous data?", + "guidance": "Please indicate whether you will be requiring anonymous data.\n\nAnonymised data is information which does not relate to an identified or identifiable natural person or to personal data rendered anonymous in such a manner that the data subject is not or no longer identifiable. \nIndividual patient level data may also very occasionally be categorised as anonymous. \nJust removing personal identifiers does not constitute anonymisation, as there may still be combinations of variables that might allow anyone to directly or indirectly identify individuals. True anonymisation is irreversible and hard to achieve.\n" + }, + { + "questionId": "safedatadatafieldsindividualidentifiersdeidentifieddata", + "question": "Are you requesting de-identified data?", + "guidance": "Please indicate whether you will be requiring de-identified data. \n\nNote that pseudonymised data does not change the status of the data as personal data. Personal data which have undergone pseudonymisation, which could be attributed to a natural person by the use of additional information should be considered to be information on an identifiable natural person.\n\nIf any pseudonymous data or data being described by the applicant as 'anonymous' will be shared with third parties, the fields to be shared should be clarified.\n", + "input": { + "options": [ + { + "value": "Not applicable", + "text": "Not applicable" + }, + { + "text": "Yes", + "value": "Yes" + }, + { + "text": "No", + "value": "No" + } + ], + "type": "radioOptionsInput", + "label": "Are you requesting de-identified data?" + } + } + ], + "text": "No" + } ], - "questionSetHeader": "Lawful basis", - "questionSetId": "safedata-lawfulbasis" - }, - { - "questionSetHeader": "Confidentiality avenue", - "questionSetId": "safedata-confidentialityavenue", - "questions": [ - { - "validations": [{ "message": "Please select an option", "type": "isLength", "params": [{ "$numberDouble": "1.0" }] }], - "questionId": "safedataconfidentialityavenuelegalbasisconfidentialinformation", - "input": { - "type": "radioOptionsInput", - "required": true, - "label": "Please provide the legal basis to process confidential information", - "options": [ - { "text": "Not applicable", "value": "Not applicable" }, - { - "conditionalQuestions": [ - { - "input": { - "type": "checkboxOptionsInput", - "options": [ - { - "value": "I have enclosed a blank copy of the patient consent form(s) and all related information sheets relevant to the time period in the data requested", - "text": "I have enclosed a blank copy of the patient consent form(s) and all related information sheets relevant to the time period in the data requested" - } - ] - }, - "questionId": "safedataconfidentialityavenueinformedconsentevidence", - "label": "Informed consent evidence", - "question": "Informed consent evidence" - } - ], - "text": "Informed consent", - "value": "Informed consent" - }, - { - "value": "Section 251 support", - "text": "Section 251 support", - "conditionalQuestions": [ - { - "input": { - "type": "checkboxOptionsInput", - "options": [ - { - "text": "I have enclosed a copy of the S251 approved amendments and any renewal letters", - "value": "I have enclosed a copy of the S251 approved amendments and any renewal letters" - } - ] - }, - "questionId": "safedataconfidentialityavenuesection251exemptionevidence", - "label": "Section 251 exemption evidence", - "question": "Section 251 exemption evidence" - }, - { - "question": "CAG reference", - "questionId": "safedataconfidentialityavenuesection251cagreference", - "input": { "type": "textInput" } - }, - { - "question": "The section 251 approval enables the applicant to", - "questionId": "safedataconfidentialityavenuesection251approvaldetails", - "input": { - "options": [ - { "text": "Hold/receive personal data", "value": "Hold/receive personal data" }, - { "text": "Transfer/access personal data", "value": "Transfer/access personal data" }, - { "value": "Operate on and link personal data", "text": "Operate on and link personal data" }, - { - "conditionalQuestions": [ - { - "question": "If other, please specify", - "input": { "type": "textInput" }, - "questionId": "safedataconfidentialityavenuesection251approvaldetailsotherdetails" - } - ], - "value": "Other", - "text": "Other" - } - ], - "type": "checkboxOptionsInput" - }, - "label": "The section 251 approval enables the applicant to" - } - ] - }, + "label": "Are you requesting data that contains individual identifiers?", + "type": "radioOptionsInput" + } + }, + { + "questionId": "safedatadatafieldsaggregatedorrecordlevel", + "defaultQuestion": 1, + "input": { + "type": "radioOptionsInput", + "label": "Do you require aggregated or record level data?", + "options": [ + { + "value": "Yes", + "text": "Yes" + }, + { + "value": "No", + "text": "No" + } + ] + }, + "lockedQuestion": 0, + "question": "Do you require aggregated or record level data?", + "guidance": "Record level data typically relates to a single individual. There may be one or many records per individual. Such data would usually carry a risk of re-identification, and use of such data would be subject to strict controls.\n\nAggregate data would typically be 'counts' of an event - for example how many people had a particular operation over a specific time period. Aggregate data is not always anonymous data, and therefore may also be subject to specific controls.\n" + } + ], + "questionSetId": "safedata-datafields", + "questionSetHeader": "Data fields" + }, + { + "questions": [ + { + "defaultQuestion": 1, + "questionId": "safedatadatafieldsdatacustodianconductanalysis", + "guidance": "Please indicate if you wish to commission the data custodian to conduct the analysis for you, minimising your exposure to the data.", + "question": "Do you wish to commission the data custodian to conduct the analysis for you, minimising your exposure to the data?", + "input": { + "label": "Do you wish to commission the data custodian to conduct the analysis for you, minimising your exposure to the data?", + "type": "radioOptionsInput", + "options": [ + { + "text": "Yes", + "value": "Yes" + }, + { + "value": "No", + "text": "No" + } + ] + }, + "lockedQuestion": 0 + } + ], + "questionSetId": "safedata-analysis", + "questionSetHeader": "Analysis" + }, + { + "questionSetHeader": "Samples required", + "questionSetId": "safedata-samplesrequired", + "questions": [ + { + "question": "Do you wish to request access to any additional resources (samples or tissues)?", + "input": { + "type": "radioOptionsInput", + "label": "Do you wish to request access to any additional resources (samples or tissues)?", + "options": [ + { + "value": "Yes", + "text": "Yes", + "conditionalQuestions": [ + { + "question": "Specify all datasets, organisations which will perform the linkage and how the linkage will take place.", + "guidance": "Please specify your requirements for the additional resources you are requesting.\n\nSamples from healthy or diseased donors? If diseased, please specify which disease.\n\nWhat material types do you require?\ne.g. whole blood, plasma, tissue, etc.\n\nWhat do you intend to do with the sample?\ne.g. cell culture, genetic analysis, histology etc.\n(This will inform which storage conditions you require.)\n\nHow many samples do you need over what timeframe?\n\nHow many samples can you receive at one time?\n\nWhat sized sample or volume do you require?\n\nWhat are your exclusion criteria?\ne.g. no HIV, no cancer, above 18, male, female\n\nWhat associated clinical information do you need?", + "input": { + "type": "textareaInput" + }, + "questionId": "safedatadatafieldsadditionalresourcesdetails" + } + ] + }, + { + "text": "No", + "value": "No" + } + ] + }, + "lockedQuestion": 0, + "defaultQuestion": 1, + "questionId": "safedatadatafieldsadditionalresources", + "guidance": "" + } + ] + }, + { + "questionSetId": "safedata-otherdatasetsintentiontolinkdata", + "questionSetHeader": "Other datasets - Intention to link data", + "questions": [ + { + "input": { + "type": "radioOptionsInput", + "label": "Do you intend for the datasets requested to be linked with any additional datasets, other than the datasets listed in this application?", + "required": true, + "options": [ + { + "text": "Yes", + "conditionalQuestions": [ + { + "question": "Specify all datasets, organisations which will perform the linkage and how the linkage will take place.", + "guidance": "Please include details of the organisations undertaking the process of linkage.", + "input": { + "type": "textareaInput" + }, + "questionId": "safedataotherdatasetslinkadditionaldatasetslinkagedetails" + } + ], + "value": "Yes" + }, + { + "value": "No", + "text": "No" + } + ] + }, + "validations": [ + { + "message": "Please select an option", + "type": "isLength", + "params": [ + 1 + ] + } + ], + "lockedQuestion": 1, + "question": "Do you intend for the datasets requested to be linked with any additional datasets, other than the datasets listed in this application?", + "guidance": "Please specify if you intend for the datasets to be linked with any additional datasets. Please also provide relevant information on the organisations undertaking linkages and provide a data flow diagram where applicable. Documents can be uploaded in the Additional Files section of this form.", + "questionId": "safedataotherdatasetslinkadditionaldatasets", + "defaultQuestion": 1 + }, + { + "input": { + "type": "textareaInput" + }, + "lockedQuestion": 1, + "question": "Please summarise the risks/mitigations considered.", + "questionId": "safedataotherdatasetsrisksmitigations", + "defaultQuestion": 1, + "guidance": "" + } + ] + }, + { + "questions": [ + { + "input": { + "type": "textareaInput" + }, + "lockedQuestion": 0, + "guidance": "Please specify what type of statistical analyses you are planning.", + "question": "What forms of statistical analysis are planned?", + "questionId": "safedatastatisticalanalysisformsplanned", + "defaultQuestion": 0 + }, + { + "input": { + "type": "textareaInput" + }, + "lockedQuestion": 0, + "guidance": "Please explain how you intend to present this in the final output.", + "question": "How is it intended that this will be presented in the final output?", + "questionId": "safedatastatisticalanalysisfinaloutput", + "defaultQuestion": 0 + }, + { + "lockedQuestion": 0, + "input": { + "type": "textareaInput" + }, + "guidance": "For example, an age range of 90-100 in a rare disease may result in a cell value of 1.", + "question": "What is the smallest cell value that is likely to be generated by this analysis and how will this be managed to avoid disclosure?", + "questionId": "safedatastatisticalanalysissmallestcellvalue", + "defaultQuestion": 0 + }, + { + "questionId": "safedatastatisticalanalysisconfounding", + "defaultQuestion": 0, + "input": { + "type": "textareaInput" + }, + "lockedQuestion": 0, + "question": "What are your plans for addressing confounding?", + "guidance": "" + }, + { + "questionId": "safedatastatisticalanalysismissingdata", + "defaultQuestion": 0, + "input": { + "type": "textareaInput" + }, + "lockedQuestion": 0, + "question": "What are your plans for addressing missing data?", + "guidance": "" + }, + { + "question": "Please present your feasibility calculation", + "input": { + "type": "textareaInput" + }, + "lockedQuestion": 0, + "defaultQuestion": 0, + "questionId": "safedatastatisticalanalysisfeasibility", + "guidance": "" + }, + { + "questionId": "safedatastatisticalanalysisstatisticalpower", + "defaultQuestion": 0, + "lockedQuestion": 0, + "input": { + "label": "Has the size of the study been informed by a formal statistical power calculation?", + "type": "radioOptionsInput", + "options": [ + { + "text": "Yes", + "value": "Yes" + }, + { + "value": "No", + "text": "No" + } + ] + }, + "question": "Has the size of the study been informed by a formal statistical power calculation?", + "guidance": "" + }, + { + "questionId": "safedatastatisticalanalysisstatistician", + "defaultQuestion": 0, + "input": { + "label": "Has a statistician given an opinion about the statistical aspects of the research?", + "type": "radioOptionsInput", + "options": [ + { + "value": "Yes", + "conditionalQuestions": [ + { + "questionId": "safedatastatisticalanalysisstatisticianyes", + "input": { + "type": "textareaInput" + }, + "question": "If yes, please give a brief summary of advice offered", + "guidance": "If available, please attach a copy of the comments as an additional file. Documents can be uploaded in the Additional Files section of this form." + } + ], + "text": "Yes" + }, + { + "value": "No", + "text": "No" + } + ] + }, + "lockedQuestion": 0, + "question": "Has a statistician given an opinion about the statistical aspects of the research?", + "guidance": "" + }, + { + "questionId": "safedatastatisticalanalysisalgorithmtraining", + "defaultQuestion": 0, + "input": { + "options": [ + { + "value": "Yes", + "text": "Yes" + }, + { + "text": "No", + "value": "No" + } + ], + "label": "Will the data requested be used for algorithm generation and training?", + "type": "radioOptionsInput" + }, + "lockedQuestion": 0, + "question": "Will the data requested be used for algorithm generation and training?", + "guidance": "These questions are to help us understand the different uses to which the data is being put to." + }, + { + "guidance": "These questions are to help us understand the different uses to which the data is being put to.", + "question": "Will the data requested be used for internal validation?", + "lockedQuestion": 0, + "input": { + "type": "radioOptionsInput", + "label": "Will the data requested be used for internal validation?", + "options": [ + { + "text": "Yes", + "value": "Yes" + }, + { + "text": "No", + "value": "No" + } + ] + }, + "defaultQuestion": 0, + "questionId": "safedatastatisticalanalysisinternalvalidation" + }, + { + "guidance": "These questions are to help us understand the different uses to which the data is being put to.", + "question": "Will the data requested be used for external validation?", + "lockedQuestion": 0, + "input": { + "type": "radioOptionsInput", + "label": "Will the data requested be used for external validation?", + "options": [ + { + "text": "Yes", + "value": "Yes" + }, + { + "text": "No", + "value": "No" + }, + { + "conditionalQuestions": [ + { + "questionId": "safedatastatisticalanalysisexternalvalidationotherdetails", + "question": "If other, please specify", + "input": { + "type": "textareaInput" + } + } + ], + "value": "Other", + "text": "Other" + } + ] + }, + "defaultQuestion": 0, + "questionId": "safedatastatisticalanalysisexternalvalidation" + }, + { + "input": { + "type": "radioOptionsInput", + "label": "Will the data be subject to any machine learning (ML) techniques?", + "options": [ + { + "value": "Yes", + "conditionalQuestions": [ + { + "input": { + "type": "textareaInput" + }, + "question": "If yes, please specify the type of machine learning technique", + "questionId": "safedatastatisticalanalysismachinelearningtechniquesdetails" + } + ], + "text": "Yes" + }, + { + "value": "No", + "text": "No" + } + ] + }, + "lockedQuestion": 0, + "question": "Will the data be subject to any machine learning (ML) techniques?", + "guidance": "These questions are to help us understand the different uses to which the data is being put to.", + "questionId": "safedatastatisticalanalysismachinelearningtechniques", + "defaultQuestion": 0 + } + ], + "questionSetHeader": "Statistical analysis", + "questionSetId": "safedata-statisticalanalysis" + }, + { + "questionSetHeader": "Lawful basis", + "questionSetId": "safedata-lawfulbasis", + "questions": [ + { + "questionId": "safedatalawfulbasisgdprarticle6basis", + "defaultQuestion": 1, + "lockedQuestion": 0, + "input": { + "options": [ + { + "text": "Not applicable", + "value": "Not applicable" + }, + { + "value": "(a) the data subject has given consent to the processing of his or her personal data for one or more specific purposes;", + "text": "(a) the data subject has given consent to the processing of his or her personal data for one or more specific purposes;" + }, + { + "text": "(b) processing is necessary for the performance of a contract to which the data subject is party or in order to take steps at the request of the data subject prior to entering into a contract;", + "value": "(b) processing is necessary for the performance of a contract to which the data subject is party or in order to take steps at the request of the data subject prior to entering into a contract;" + }, + { + "value": "(c) processing is necessary for compliance with a legal obligation to which the controller is subject;", + "text": "(c) processing is necessary for compliance with a legal obligation to which the controller is subject;" + }, + { + "text": "(d) processing is necessary in order to protect the vital interests of the data subject or of another natural person;", + "value": "(d) processing is necessary in order to protect the vital interests of the data subject or of another natural person;" + }, + { + "value": "(e) processing is necessary for the performance of a task carried out in the public interest or in the exercise of official authority vested in the controller;", + "text": "(e) processing is necessary for the performance of a task carried out in the public interest or in the exercise of official authority vested in the controller;" + }, + { + "value": "(f) processing is necessary for the purposes of the legitimate interests pursued by the controller or by a third party, except where such interests are overridden by the interests or fundamental rights and freedoms of the data subject which require protection of personal data, in particular where the data subject is a child.", + "text": "(f) processing is necessary for the purposes of the legitimate interests pursued by the controller or by a third party, except where such interests are overridden by the interests or fundamental rights and freedoms of the data subject which require protection of personal data, in particular where the data subject is a child." + } + ], + "label": "Article 6 lawful basis", + "type": "radioOptionsInput" + }, + "guidance": "The lawful bases for processing are set out in Article 6 of the GDPR (https://gdpr-info.eu/art-6-gdpr/). At least one legal basis must apply whenever you process personal data. Please select the appropriate Article 6 lawful basis. Processing shall be lawful only if, and to the extent, that at least one of the following applies.", + "question": "Article 6 lawful basis" + }, + { + "lockedQuestion": 0, + "input": { + "type": "textareaInput" + }, + "guidance": "Please provide justification for selected Article 6 lawful basis.", + "question": "Article 6 legal basis justification", + "questionId": "safedatalawfulbasisgdprarticle6basisjustification", + "defaultQuestion": 1 + }, + { + "questionId": "safedatalawfulbasisgdprarticle9conditions", + "defaultQuestion": 1, + "lockedQuestion": 0, + "input": { + "label": "Article 9 conditions", + "type": "radioOptionsInput", + "options": [ + { + "value": "Not applicable", + "text": "Not applicable" + }, + { + "text": "(a) the data subject has given explicit consent to the processing of those personal data for one or more specified purposes, except where Union or Member State law provide that the prohibition referred to in paragraph 1 may not be lifted by the data subject;", + "value": "(a) the data subject has given explicit consent to the processing of those personal data for one or more specified purposes, except where Union or Member State law provide that the prohibition referred to in paragraph 1 may not be lifted by the data subject;" + }, + { + "text": "(b) processing is necessary for the purposes of carrying out the obligations and exercising specific rights of the controller or of the data subject in the field of employment and social security and social protection law in so far as it is authorised by Union or Member State law or a collective agreement pursuant to Member State law providing for appropriate safeguards for the fundamental rights and the interests of the data subject;", + "value": "(b) processing is necessary for the purposes of carrying out the obligations and exercising specific rights of the controller or of the data subject in the field of employment and social security and social protection law in so far as it is authorised by Union or Member State law or a collective agreement pursuant to Member State law providing for appropriate safeguards for the fundamental rights and the interests of the data subject;" + }, + { + "text": "(c) processing is necessary to protect the vital interests of the data subject or of another natural person where the data subject is physically or legally incapable of giving consent;", + "value": "(c) processing is necessary to protect the vital interests of the data subject or of another natural person where the data subject is physically or legally incapable of giving consent;" + }, + { + "value": "(d) processing is carried out in the course of its legitimate activities with appropriate safeguards by a foundation, association or any other not-for-profit body with a political, philosophical, religious or trade union aim and on condition that the processing relates solely to the members or to former members of the body or to persons who have regular contact with it in connection with its purposes and that the personal data are not disclosed outside that body without the consent of the data subjects;", + "text": "(d) processing is carried out in the course of its legitimate activities with appropriate safeguards by a foundation, association or any other not-for-profit body with a political, philosophical, religious or trade union aim and on condition that the processing relates solely to the members or to former members of the body or to persons who have regular contact with it in connection with its purposes and that the personal data are not disclosed outside that body without the consent of the data subjects;" + }, + { + "value": "(e) processing relates to personal data which are manifestly made public by the data subject;", + "text": "(e) processing relates to personal data which are manifestly made public by the data subject;" + }, + { + "text": "(f) processing is necessary for the establishment, exercise or defence of legal claims or whenever courts are acting in their judicial capacity;", + "value": "(f) processing is necessary for the establishment, exercise or defence of legal claims or whenever courts are acting in their judicial capacity;" + }, + { + "text": "(g) processing is necessary for reasons of substantial public interest, on the basis of Union or Member State law which shall be proportionate to the aim pursued, respect the essence of the right to data protection and provide for suitable and specific measures to safeguard the fundamental rights and the interests of the data subject;", + "value": "(g) processing is necessary for reasons of substantial public interest, on the basis of Union or Member State law which shall be proportionate to the aim pursued, respect the essence of the right to data protection and provide for suitable and specific measures to safeguard the fundamental rights and the interests of the data subject;" + }, + { + "text": "(h) processing is necessary for the purposes of preventive or occupational medicine, for the assessment of the working capacity of the employee, medical diagnosis, the provision of health or social care or treatment or the management of health or social care systems and services on the basis of Union or Member State law or pursuant to contract with a health professional and subject to the conditions and safeguards referred to in paragraph 3;", + "value": "(h) processing is necessary for the purposes of preventive or occupational medicine, for the assessment of the working capacity of the employee, medical diagnosis, the provision of health or social care or treatment or the management of health or social care systems and services on the basis of Union or Member State law or pursuant to contract with a health professional and subject to the conditions and safeguards referred to in paragraph 3;" + }, + { + "text": "(i) processing is necessary for reasons of public interest in the area of public health, such as protecting against serious cross-border threats to health or ensuring high standards of quality and safety of health care and of medicinal products or medical devices, on the basis of Union or Member State law which provides for suitable and specific measures to safeguard the rights and freedoms of the data subject, in particular professional secrecy;", + "value": "(i) processing is necessary for reasons of public interest in the area of public health, such as protecting against serious cross-border threats to health or ensuring high standards of quality and safety of health care and of medicinal products or medical devices, on the basis of Union or Member State law which provides for suitable and specific measures to safeguard the rights and freedoms of the data subject, in particular professional secrecy;" + }, + { + "value": "(j) processing is necessary for archiving purposes in the public interest, scientific or historical research purposes or statistical purposes in accordance with Article 89(1) based on Union or Member State law which shall be proportionate to the aim pursued, respect the essence of the right to data protection and provide for suitable and specific measures to safeguard the fundamental rights and the interests of the data subject.", + "text": "(j) processing is necessary for archiving purposes in the public interest, scientific or historical research purposes or statistical purposes in accordance with Article 89(1) based on Union or Member State law which shall be proportionate to the aim pursued, respect the essence of the right to data protection and provide for suitable and specific measures to safeguard the fundamental rights and the interests of the data subject." + } + ] + }, + "guidance": "Please select appropriate Article 9 conditions. \n \nProcessing of personal data revealing racial or ethnic origin, political opinions, religious or philosophical beliefs, or trade union membership, and the processing of genetic data, biometric data for the purpose of uniquely identifying a natural person, data concerning health or data concerning a natural person's sex life or sexual orientation shall be prohibited. This does not apply if one of the following applies.\n", + "question": "Article 9 conditions" + }, + { + "defaultQuestion": 1, + "questionId": "safedatalawfulbasisgdprarticle9basisjustification", + "question": "Article 9 legal basis justification", + "guidance": "Please provide justification for selected Article 9 conditions.", + "input": { + "type": "textareaInput" + }, + "lockedQuestion": 0 + } + ] + }, + { + "questionSetId": "safedata-confidentialityavenue", + "questionSetHeader": "Confidentiality avenue", + "questions": [ + { + "input": { + "type": "radioOptionsInput", + "label": "Please provide the legal basis to process confidential information", + "options": [ + { + "value": "Not applicable", + "text": "Not applicable" + }, + { + "value": "Informed consent", + "conditionalQuestions": [ + { + "question": "Informed consent evidence", + "guidance": "Please ensure a copy of the consent form(s) and patient information sheet have been provided. Documents can be uploaded in the Additional Files section of this form.", + "input": { + "options": [ + { + "value": "I have enclosed a blank copy of the patient consent form(s) and all related information sheets relevant to the time period in the data requested", + "text": "I have enclosed a blank copy of the patient consent form(s) and all related information sheets relevant to the time period in the data requested" + } + ], + "type": "checkboxOptionsInput" + }, + "questionId": "safedataconfidentialityavenueinformedconsentevidence", + "label": "Informed consent evidence" + } + ], + "text": "Informed consent" + }, + { + "text": "Section 251 support", + "conditionalQuestions": [ + { + "label": "Section 251 exemption evidence", + "questionId": "safedataconfidentialityavenuesection251exemptionevidence", + "question": "Section 251 exemption evidence", + "guidance": "Please ensure a copy of the Section 251 exemption has been provided. Documents can be uploaded in the Additional Files section of this form.", + "input": { + "type": "checkboxOptionsInput", + "options": [ + { + "value": "I have enclosed a copy of the S251 approved amendments and any renewal letters", + "text": "I have enclosed a copy of the S251 approved amendments and any renewal letters" + } + ] + } + }, + { + "questionId": "safedataconfidentialityavenuesection251cagreference", + "question": "CAG reference", + "input": { + "type": "textInput" + } + }, + { + "guidance": "Please indicate what the Section 251 exemption permits you to do as part of your project.", + "question": "The section 251 approval enables the applicant to", + "input": { + "options": [ + { + "value": "Hold/receive personal data", + "text": "Hold/receive personal data" + }, + { + "text": "Transfer/access personal data", + "value": "Transfer/access personal data" + }, + { + "text": "Operate on and link personal data", + "value": "Operate on and link personal data" + }, + { + "value": "Other", + "conditionalQuestions": [ { - "text": "Other", - "value": "Other", - "conditionalQuestions": [ - { - "question": "If other, please specify", - "questionId": "safedataconfidentialityavenuelegalbasisconfidentialinformationotherdetails", - "input": { "type": "textInput" } - } - ] + "question": "If other, please specify", + "input": { + "type": "textInput" + }, + "questionId": "safedataconfidentialityavenuesection251approvaldetailsotherdetails" } - ] + ], + "text": "Other" + } + ], + "type": "checkboxOptionsInput" }, - "question": "Please provide the legal basis to process confidential information", - "lockedQuestion": 1, - "defaultQuestion": 0 - } + "label": "The section 251 approval enables the applicant to", + "questionId": "safedataconfidentialityavenuesection251approvaldetails" + } + ], + "value": "Section 251 support" + }, + { + "text": "Other", + "value": "Other", + "conditionalQuestions": [ + { + "questionId": "safedataconfidentialityavenuelegalbasisconfidentialinformationotherdetails", + "input": { + "type": "textInput" + }, + "question": "If other, please specify" + } + ] + } ] + }, + "lockedQuestion": 1, + "question": "Please provide the legal basis to process confidential information", + "guidance": "Please confirm if consent is in place or underway for all disclosures of confidential information, if you have Section 251 exemption, or any other legal basis that you require for the project.\n\nFor England and Wales, please specify if Section 251 exemption is currently being sought and if so, please provide a Confidentiality Advisory group reference code.\n\nIn Scotland applications are required for the consented and unconsented use of data.\n", + "questionId": "safedataconfidentialityavenuelegalbasisconfidentialinformation", + "defaultQuestion": 1 + } + ] + }, + { + "questionSetHeader": "Ethical approval", + "questions": [ + { + "input": { + "options": [ + { + "text": "Yes", + "value": "Yes" + }, + { + "text": "No", + "value": "No" + } + ], + "label": "Do you seek for your project to be approved under the generic favourable ethical opinion of the INSIGHT Research Database (Ref: 20/WS/0087)?", + "required": true, + "type": "radioOptionsInput", + "guidance": "" + }, + "defaultQuestion": 1, + "questionId": "safedataethicsapprovalinsightresearch", + "lockedQuestion": 1, + "question": "Do you seek for your project to be approved under the generic favourable ethical opinion of the INSIGHT Research Database (Ref: 20/WS/0087)?", + "validations": [ + { + "params": [ + 1 + ], + "message": "Please select an option", + "type": "isLength" + } + ], + "guidance": "" }, { - "questions": [ - { - "question": "Do you seek for your project to be approved under the generic favourable ethical opinion of the INSIGHT Research Database (Ref: 20/WS/0087)?", + "input": { + "options": [ + { + "text": "Yes", + "value": "Yes", + "conditionalQuestions": [ + { + "question": "Approval - REC committee name", + "questionId": "safedataethicsapprovalapprovalobtainedreccommitteename", + "guidance": "Please provide REC or other committee details.", "input": { - "options": [ - { "value": "Yes", "text": "Yes" }, - { "value": "No", "text": "No" } - ], - "type": "radioOptionsInput", - "label": "Do you seek for your project to be approved under the generic favourable ethical opinion of the INSIGHT Research Database (Ref: 20/WS/0087)?" + "type": "textInput" + } + }, + { + "input": { + "type": "textInput" + }, + "questionId": "safedataethicsapprovalapprovalobtainedrecreferencenumber", + "question": "Approval - REC reference number" + }, + { + "question": "Approval - Other committee", + "questionId": "safedataethicsapprovalapprovalobtainedothercommittee", + "input": { + "type": "textInput" + } + }, + { + "input": { + "options": [ + { + "text": "I have enclosed a copy of the final REC approval letter and letters documenting any REC approved amendments", + "value": "I have enclosed a copy of the final REC approval letter and letters documenting any REC approved amendments" + } + ], + "type": "checkboxOptionsInput" + }, + "guidance": "Please confirm a copy of the REC referenced above has been enclosed. Documents can be uploaded in the Additional Files section of this form.", + "label": "Evidence of REC approval", + "questionId": "safedataethicsapprovalapprovalobtainedevidenceenclosed", + "question": "Evidence of REC approval" + } + ] + }, + { + "text": "No", + "value": "No", + "conditionalQuestions": [ + { + "input": { + "type": "textInput" + }, + "guidance": "If not, please provide details.", + "questionId": "safedataethicsapprovalapprovalobtainednotobtaineddetails", + "question": "If not, please provide more details" + } + ] + }, + { + "value": "Approval pending", + "text": "Approval pending", + "conditionalQuestions": [ + { + "input": { + "type": "textInput" }, - "questionId": "safedataethicsapprovalinsightresearch", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "validations": [{ "type": "isLength", "message": "Please select an option", "params": [{ "$numberDouble": "1.0" }] }], - "questionId": "safedataethicsapprovalapprovalobtained", - "input": { - "options": [ + "guidance": "If approval is pending, please provide details.", + "questionId": "safedataethicsapprovalapprovalobtainedpendingdetails", + "question": "If approval is pending, please provide more details" + } + ] + }, + { + "text": "Not required", + "value": "Not required", + "conditionalQuestions": [ + { + "input": { + "type": "textInput" + }, + "guidance": "If not, please provide details.", + "questionId": "safedataethicsapprovalapprovalobtainednotrequireddetails", + "question": "If not, please provide more details" + } + ] + } + ], + "label": "Has ethical approval been obtained?", + "required": true, + "type": "radioOptionsInput" + }, + "defaultQuestion": 1, + "questionId": "safedataethicsapprovalapprovalobtained", + "guidance": "Please confirm if research ethics approval has been obtained. Request for research purposes must include enclose evidence of ethics approval or evidence that this is not required.", + "lockedQuestion": 1, + "question": "Has ethical approval been obtained?", + "validations": [ + { + "params": [ + 1 + ], + "message": "Please select an option", + "type": "isLength" + } + ] + } + ], + "questionSetId": "safedata-ethicalapproval" + }, + { + "questionSetHeader": "Storage and processing", + "questionSetId": "safesettings-storageandprocessing", + "questions": [ + { + "questionId": "safedatastorageandprocessingaccessmethod", + "defaultQuestion": 1, + "input": { + "options": [ + { + "text": "Via a Trusted Research Environment", + "value": "Via a Trusted Research Environment", + "conditionalQuestions": [ + { + "questionId": "safedatastorageandprocessingaccessmethodtrustedresearchenvironment", + "question": "In which Trusted Research Environment will the data be accessed?", + "input": { + "type": "radioOptionsInput", + "label": "In which Trusted Research Environment will the data be accessed?", + "options": [ + { + "text": "Secure e-Research Platform (SeRP)", + "value": "Secure e-Research Platform (SeRP)" + }, + { + "text": "NI Honest Broker Service (NI HBS)", + "value": "NI Honest Broker Service (NI HBS)" + }, + { + "value": "Scottish National Safe Haven (SNSH)", + "text": "Scottish National Safe Haven (SNSH)" + }, + { + "text": "NHS Digital", + "conditionalQuestions": [ { - "conditionalQuestions": [ - { - "guidance": "Please provide REC or other committee details.", - "input": { "type": "textInput" }, - "questionId": "safedataethicsapprovalapprovalobtainedreccommitteename", - "question": "Approval - REC committee name" - }, - { - "questionId": "safedataethicsapprovalapprovalobtainedrecreferencenumber", - "input": { "type": "textInput" }, - "question": "Approval - REC reference number" - }, - { - "question": "Approval - Other committee", - "questionId": "safedataethicsapprovalapprovalobtainedothercommittee", - "input": { "type": "textInput" } - }, - { - "label": "Evidence of REC approval", - "guidance": "Please confirm a copy of the REC referenced above has been enclosed.", - "input": { - "options": [ - { - "text": "I have enclosed a copy of the final REC approval letter and letters documenting any REC approved amendments", - "value": "I have enclosed a copy of the final REC approval letter and letters documenting any REC approved amendments" - } - ], - "type": "checkboxOptionsInput" - }, - "questionId": "safedataethicsapprovalapprovalobtainedevidenceenclosed", - "question": "Evidence of REC approval" - } - ], - "value": "Yes", - "text": "Yes" - }, + "questionId": "safedatastorageandprocessingaccessmethodtrustedresearchenvironmentdspdetails", + "validations": [ + { + "message": "Please enter a value", + "type": "isLength", + "params": [ + 1 + ] + } + ], + "input": { + "type": "textInput", + "required": true + }, + "question": "Does the applicant organisation have a DSP Toolkit? If so, please provide details including code, score and version completed." + } + ], + "value": "NHS Digital" + }, + { + "text": "SAIL Databank", + "value": "SAIL Databank" + }, + { + "text": "ONS Secure Research Service (SRS)", + "value": "ONS Secure Research Service (SRS)" + }, + { + "text": "Other", + "value": "Other", + "conditionalQuestions": [ { - "text": "No", - "value": "No", - "conditionalQuestions": [ - { - "questionId": "safedataethicsapprovalapprovalobtainednotobtaineddetails", - "input": { "type": "textInput" }, - "question": "If not, please provide more details" - } - ] + "question": "If other, please specify", + "input": { + "type": "textInput" + }, + "questionId": "safedatastorageandprocessingaccessmethodtrustedresearchenvironmentotherdetails" + } + ] + } + ] + } + } + ] + }, + { + "conditionalQuestions": [ + { + "input": { + "type": "textInput" + }, + "question": "Registered name of organisation", + "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationname" + }, + { + "question": "Registered number", + "input": { + "type": "textInput" + }, + "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationregisterednumber" + }, + { + "input": { + "type": "checkboxOptionsInput", + "options": [ + { + "value": "Storage", + "text": "Storage" + }, + { + "text": "Processing", + "value": "Processing" + } + ] + }, + "question": "Will this organisation be storing or processing the data?", + "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationstoringorprocessing", + "label": "Will this organisation be storing or processing the data?" + }, + { + "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationsecurityassurance", + "label": "What type of security assurance does this organisation have in place?", + "input": { + "options": [ + { + "text": "Data security and Protection Toolkit (DSP Toolkit)", + "value": "Data security and Protection Toolkit (DSP Toolkit)", + "conditionalQuestions": [ + { + "question": "DSP Toolkit organisation code", + "guidance": "As a data controller, the applicant's organisation should be registered with the Information Commissioner's Office (ICO). Please provide Security and Protection Toolkit (DSP Toolkit) details.", + "input": { + "type": "textInput" + }, + "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationsecurityassurancedsporganisationcode" }, { - "text": "Approval pending", - "value": "Approval pending", - "conditionalQuestions": [ - { - "question": "If approval is pending, please provide more details", - "input": { "type": "textInput" }, - "questionId": "safedataethicsapprovalapprovalobtainedpendingdetails", - "guidance": "If approval is pending, please provide details." - } - ] + "question": "DSP Toolkit score", + "input": { + "type": "textInput" + }, + "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationsecurityassurancedsptoolkitscore" }, { - "value": "Not required", - "text": "Not required", - "conditionalQuestions": [ - { - "question": "If not required, please provide details", - "guidance": "If ethics approval is not required, please explain why this is the case.", - "questionId": "safedataethicsapprovalapprovalobtainednotrequireddetails", - "input": { "type": "textInput" } - } - ] + "question": "DSP Toolkit version completed", + "input": { + "type": "textInput" + }, + "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationsecurityassurancedspversioncompleted" } - ], - "label": "Has ethical approval been obtained?", - "type": "radioOptionsInput", - "required": true - }, - "guidance": "Please confirm if ethics approval has been obtained. Request for research purposes must include evidence of ethics approval or evidence that this is not required.", - "question": "Has ethical approval been obtained?", - "lockedQuestion": 1, - "defaultQuestion": 0 - } - ], - "questionSetHeader": "Ethical approval", - "questionSetId": "safedata-ethicalapproval" - }, - { - "questions": [ - { - "guidance": "Please specify if the data will be accessed within a Trusted Research Environment. ", - "input": { - "options": [ + ] + }, + { + "text": "ISO 27001", + "value": "ISO 27001", + "conditionalQuestions": [ { - "conditionalQuestions": [ - { - "guidance": "If you have selected 'Other', please specify the Trusted Research Environment.", - "input": { - "type": "radioOptionsInput", - "label": "In which Trusted Research Environment will the data be accessed?", - "options": [ - { "value": "Secure e-Research Platform (SeRP)", "text": "Secure e-Research Platform (SeRP)" }, - { "value": "NI Honest Broker Service (NI HBS)", "text": "NI Honest Broker Service (NI HBS)" }, - { "text": "Scottish National Safe Haven (SNSH)", "value": "Scottish National Safe Haven (SNSH)" }, - { - "text": "NHS Digital", - "value": "NHS Digital", - "conditionalQuestions": [ - { - "questionId": "safedatastorageandprocessingaccessmethodtrustedresearchenvironmentdspdetails", - "input": { "type": "textInput" }, - "question": "Does the applicant organisation have a DSP Toolkit? If so, please provide details including code, score and version completed." - } - ] - }, - { "text": "SAIL Databank", "value": "SAIL Databank" }, - { "value": "ONS Secure Research Service (SRS)", "text": "ONS Secure Research Service (SRS)" }, - { - "value": "Other", - "text": "Other", - "conditionalQuestions": [ - { - "question": "If other, please specify", - "questionId": "safedatastorageandprocessingaccessmethodtrustedresearchenvironmentotherdetails", - "input": { "type": "textInput" } - } - ] - } - ] - }, - "questionId": "safedatastorageandprocessingaccessmethodtrustedresearchenvironment", - "question": "In which Trusted Research Environment will the data be accessed?" - } + "guidance": "Please confirm that you have enclosed a copy of your ISO 27001 certificate. Documents can be uploaded in the Additional Files section of this form.", + "question": "Evidence of ISO 27001", + "input": { + "options": [ + { + "value": "I have enclosed a copy of my certificate", + "text": "I have enclosed a copy of my certificate" + } ], - "text": "Via a Trusted Research Environment", - "value": "Via a Trusted Research Environment" - }, + "type": "checkboxOptionsInput" + }, + "label": "Evidence of ISO 27001", + "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationsecurityassuranceiso27001evidence" + } + ] + }, + { + "conditionalQuestions": [ { - "conditionalQuestions": [ - { - "question": "Registered name of organisation", - "input": { "type": "textInput" }, - "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationname", - "guidance": "Please provide ICO registration details." - }, - { - "question": "Registered number", - "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationregisterednumber", - "input": { "type": "textInput" } - }, - { - "question": "Will this organisation be storing or processing the data?", - "label": "Will this organisation be storing or processing the data?", - "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationstoringorprocessing", - "input": { - "options": [ - { "value": "Storage", "text": "Storage" }, - { "text": "Processing", "value": "Processing" } - ], - "type": "checkboxOptionsInput" - } - }, - { - "label": "What type of security assurance does this organisation have in place?", - "guidance": "Adequate security assurance must be provided for all processing locations. Each organisation processing data that is not fully anonymous as part of this project must demonstrate that they have appropriate security arrangements are in place. Please confirm whether the applicant organisation has a compliant Data Security and Protection Toolkit.", - "input": { - "type": "checkboxOptionsInput", - "options": [ - { - "text": "Data security and Protection Toolkit (DSP Toolkit)", - "value": "Data security and Protection Toolkit (DSP Toolkit)", - "conditionalQuestions": [ - { - "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationsecurityassurancedsporganisationcode", - "input": { "type": "textInput" }, - "guidance": "As a data controller, the applicant's organisation should be registered with the Information Commissioner's Office (ICO). Please provide Security and Protection Toolkit (DSP Toolkit) details.", - "question": "DSP Toolkit organisation code" - }, - { - "question": "DSP Toolkit score", - "input": { "type": "textInput" }, - "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationsecurityassurancedsptoolkitscore" - }, - { - "question": "DSP Toolkit version completed", - "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationsecurityassurancedspversioncompleted", - "input": { "type": "textInput" } - } - ] - }, - { - "text": "ISO 27001", - "value": "ISO 27001", - "conditionalQuestions": [ - { - "label": "Evidence of ISO 27001", - "input": { - "options": [ - { - "text": "I have enclosed a copy of my certificate", - "value": "I have enclosed a copy of my certificate" - } - ], - "type": "checkboxOptionsInput" - }, - "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationsecurityassuranceiso27001evidence", - "question": "Evidence of ISO 27001" - } - ] - }, - { - "conditionalQuestions": [ - { - "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationsecurityassuranceslspevidence", - "input": { - "type": "checkboxOptionsInput", - "options": [ - { - "value": "I have enclosed a completed system level security policy for ODR review", - "text": "I have enclosed a completed system level security policy for ODR review" - } - ] - }, - "label": "Evidence of SLSP", - "question": "Evidence of SLSP" - } - ], - "text": "SLSP", - "value": "SLSP" - }, - { - "text": "Other", - "value": "Other", - "conditionalQuestions": [ - { - "question": "If other, please specify", - "guidance": "If you have selected 'Other', please specify the type of security assurance the organisation has put in place.", - "input": { "type": "textInput" }, - "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationsecurityassuranceotherdetails" - } - ] - } - ] - }, - "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationsecurityassurance", - "question": "What type of security assurance does this organisation have in place?" - }, - { - "questionId": "add-safesettings-storageandprocessing", - "input": { - "separatorText": "Organisation Details", - "type": "buttonInput", - "class": "btn btn-primary addButton", - "action": "addRepeatableQuestions", - "questionIds": [ - "safedatastorageandprocessingaccessmethodphysicallocationorganisationname", - "safedatastorageandprocessingaccessmethodphysicallocationorganisationregisterednumber", - "safedatastorageandprocessingaccessmethodphysicallocationorganisationstoringorprocessing", - "safedatastorageandprocessingaccessmethodphysicallocationorganisationsecurityassurance" - ], - "text": "Add another organisation?" - } - } - ], - "value": "Via transfer to a physical location (Provide details of the processing/storage organisations below)", - "text": "Via transfer to a physical location (Provide details of the processing/storage organisations below)" + "label": "Evidence of SLSP", + "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationsecurityassuranceslspevidence", + "input": { + "type": "checkboxOptionsInput", + "options": [ + { + "value": "I have enclosed a completed system level security policy for ODR review", + "text": "I have enclosed a completed system level security policy for ODR review" + } + ] + }, + "question": "Evidence of SLSP" } - ], - "label": "How will the data be accessed?", - "type": "checkboxOptionsInput" + ], + "value": "SLSP", + "text": "SLSP" + }, + { + "text": "Other", + "value": "Other", + "conditionalQuestions": [ + { + "questionId": "safedatastorageandprocessingaccessmethodphysicallocationorganisationsecurityassuranceotherdetails", + "question": "If other, please specify", + "input": { + "type": "textInput" + } + } + ], + "guidance": "If you have selected 'Other', please specify the type of security assurance the organisation has put in place." + } + ], + "type": "checkboxOptionsInput" }, - "questionId": "safedatastorageandprocessingaccessmethod", - "question": "How will the data be accessed?", - "lockedQuestion": 1, - "defaultQuestion": 0 - } + "guidance": "Adequate security assurance must be provided for all processing locations. Each organisation processing data that is not fully anonymous as part of this project must demonstrate that they have appropriate security arrangements are in place. Please confirm whether the applicant organisation has a compliant Data Security and Protection Toolkit.", + "question": "What type of security assurance does this organisation have in place?" + }, + { + "questionId": "safedatastorageandprocessingaccessmethodphysicallocationreasonfornotchoosingtre", + "question": "If you do not wish to access via a Trusted Research Environment, please provide the reason.", + "input": { + "type": "textareaInput" + } + }, + { + "questionId": "add-safesettings-storageandprocessing", + "input": { + "type": "buttonInput", + "questionIds": [ + "safedatastorageandprocessingaccessmethodphysicallocationorganisationname", + "safedatastorageandprocessingaccessmethodphysicallocationorganisationregisterednumber", + "safedatastorageandprocessingaccessmethodphysicallocationorganisationstoringorprocessing", + "safedatastorageandprocessingaccessmethodphysicallocationorganisationsecurityassurance", + "safedatastorageandprocessingaccessmethodphysicallocationreasonfornotchoosingtre" + ], + "separatorText": "Organisation Details", + "text": "Add another organisation?", + "action": "addRepeatableQuestions", + "class": "btn btn-primary addButton" + } + } + ], + "value": "Via transfer to a physical location (Provide details of the processing/storage organisations below)", + "text": "Via transfer to a physical location (Provide details of the processing/storage organisations below)" + } ], - "questionSetId": "safesettings-storageandprocessing", - "questionSetHeader": "Storage and processing" - }, + "type": "checkboxOptionsInput", + "label": "How will the data be accessed?" + }, + "lockedQuestion": 1, + "question": "How will the data be accessed?", + "guidance": "Please specify if the data will be accessed within a Trusted Research Environment. " + } + ] + }, + { + "questionSetId": "safesettings-dataflow", + "questionSetHeader": "Dataflow", + "questions": [ { - "questions": [ - { - "validations": [{ "params": [{ "$numberDouble": "1.0" }], "message": "Please select an option", "type": "isLength" }], - "input": { - "options": [ - { - "value": "Yes", - "text": "Yes", - "conditionalQuestions": [ - { - "question": "If yes, please provide more details", - "input": { "type": "textareaInput" }, - "questionId": "safedatadataflowdatatransferedoutsideukdetails" - } - ] - }, - { "value": "No", "text": "No" } + "validations": [ + { + "params": [ + 1 + ], + "type": "isLength", + "message": "Please select an option" + }, + { + "message": "Please enter a value", + "params": [ + 1 + ], + "type": "isLength" + }, + { + "message": "Please enter a value", + "params": [ + 1 + ], + "type": "isLength" + } + ], + "input": { + "type": "radioOptionsInput", + "label": "Will the data be transferred outside of the United Kingdom?", + "options": [ + { + "conditionalQuestions": [ + { + "validations": [ + { + "type": "isLength", + "params": [ + 1 ], - "label": "Will the data be transferred outside of the United Kingdom?", - "type": "radioOptionsInput", - "required": true - }, - "questionId": "safedatadataflowdatatransferedoutsideuk", - "question": "Will the data be transferred outside of the United Kingdom?", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "questionId": "safedatadataflowregionsdataprocessed", - "input": { - "type": "checkboxOptionsInput", - "label": "Please specify the regions where data will be processed.", - "options": [ - { "text": "England/Wales", "value": "England/Wales" }, - { "value": "United Kingdom", "text": "United Kingdom" }, - { "value": "European Economic Area", "text": "European Economic Area" }, - { "value": "Other", "text": "Other" } - ] - }, - "question": "Please specify the regions where data will be processed.", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "input": { "type": "textareaInput" }, - "questionId": "safedatadataflowdetailedinformation", - "question": "Please provide detailed information on data flows", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "questionId": "safedatadataflowdiagramenclosed", - "input": { - "options": [{ "value": "I have enclosed a copy of the dataflow", "text": "I have enclosed a copy of the dataflow" }], - "label": "Please include a data flow diagram for the requested data and any additional datasets intended to be linked.", - "type": "checkboxOptionsInput" + "message": "Please enter a value" + } + ], + "input": { + "required": true, + "type": "textareaInput" }, - "question": "Please include a data flow diagram for the requested data and any additional datasets intended to be linked.", - "lockedQuestion": 1, - "defaultQuestion": 0 - } + "question": "If yes, please provide more details", + "questionId": "safedatadataflowdatatransferedoutsideukdetails" + } + ], + "value": "Yes", + "text": "Yes" + }, + { + "text": "No", + "value": "No" + } ], - "questionSetHeader": "Dataflow", - "questionSetId": "safesettings-dataflow" - }, - { - "questions": [ - { - "question": "How will proposal findings be disseminated, to what audience and in what format?", - "questionId": "safeoutputsoutputsdisseminationplansproposalfindings", - "validations": [{ "params": [{ "$numberDouble": "1.0" }], "message": "Please enter a value", "type": "isLength" }], - "input": { "required": true, "type": "textareaInput" }, - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "validations": [{ "params": [{ "$numberDouble": "1.0" }], "message": "Please enter a value", "type": "isLength" }], - "input": { "type": "textareaInput", "required": true }, - "questionId": "safeoutputsoutputsdisseminationplansmilestones", - "question": "Please include any milestones for outputs dissemination.", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "validations": [{ "params": [{ "$numberDouble": "1.0" }], "type": "isLength", "message": "Please enter a value" }], - "input": { "type": "textareaInput", "required": true }, - "questionId": "safeoutputsoutputsdisseminationplansdisclosurecontrolpolicy", - "question": "What steps will be taken to ensure that individuals cannot be identified? Please describe what disclosure control policy will be applied.", - "lockedQuestion": 1, - "defaultQuestion": 0 - } - ], - "questionSetId": "safeoutputs-outputsdisseminationplans", - "questionSetHeader": "Outputs dissemination plans" - }, - { - "questionSetHeader": "Retention", - "questionSetId": "safeoutputs-retention", - "questions": [ - { - "question": "Please state the date until which you will retain the data", - "validations": [{ "params": [{ "$numberDouble": "1.0" }], "type": "isLength", "message": "Please enter a value" }], - "questionId": "safeoutputs-dataretention-retaindatadate", - "input": { "required": true, "type": "datePickerCustom" }, - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "input": { "type": "textareaInput" }, - "questionId": "safeoutputsdataretentionretaindatadatereason", - "question": "Please indicate the reason for this date", - "lockedQuestion": 1, - "defaultQuestion": 0 - }, - { - "input": { "type": "textareaInput" }, - "questionId": "safeoutputsdataretentionretaindataextensionpermissions", - "question": "Please provide details of any permissions that will need to apply for an extension during this period in order to retain a legal basis to hold the data (e.g. section 251)", - "lockedQuestion": 1, - "defaultQuestion": 0 - } + "required": true + }, + "lockedQuestion": 1, + "question": "Will the data be transferred outside of the United Kingdom?", + "questionId": "safedatadataflowdatatransferedoutsideuk", + "defaultQuestion": 1, + "guidance": "" + }, + { + "defaultQuestion": 1, + "questionId": "safedatadataflowregionsdataprocessed", + "question": "Please specify the regions where data will be processed.", + "guidance": "Please indicate if data will be transferred outside of the European Economic Area, it must be stated where to and details given of how that will be in compliance with the Data Protection Act 2018.\n\n If data are to be stored or processed outside of England/Wales, it may be that you will need to provide further assurance to support your application\n", + "lockedQuestion": 0, + "input": { + "type": "checkboxOptionsInput", + "label": "Please specify the regions where data will be processed.", + "options": [ + { + "value": "England/Wales", + "text": "England/Wales" + }, + { + "value": "United Kingdom", + "text": "United Kingdom" + }, + { + "value": "European Economic Area", + "text": "European Economic Area" + }, + { + "text": "Other", + "value": "Other" + } ] + } + }, + { + "questionId": "safedatadataflowdetailedinformation", + "defaultQuestion": 1, + "lockedQuestion": 0, + "input": { + "type": "textareaInput" + }, + "question": "Please provide detailed information on data flows", + "guidance": "" + }, + { + "lockedQuestion": 0, + "input": { + "type": "checkboxOptionsInput", + "label": "Please include a data flow diagram for the requested data and any additional datasets intended to be linked.", + "options": [ + { + "text": "I have enclosed a copy of the dataflow", + "value": "I have enclosed a copy of the dataflow" + } + ] + }, + "question": "Please include a data flow diagram for the requested data and any additional datasets intended to be linked.", + "guidance": "A data flow diagram is helpful in showing planned data flows of how data will move through the project, whether the data are identifiable or pseudonymised, who has access to, who is responsible for the data at any point, the permissions/consent in place and how it will be kept secure at every stage.\n \n The data flow should describe which organisation (if more than one) will be receiving the data and in what form (anonymised/limited access de-identified/personal). Your data flow should include:\n \n* All locations where the data will be housed/stored\n \n* All transfers of data that will take place between organisations (and premises if an organisation has more than one remises where the data will be housed/stored)\n \n* The format of the data as part of each transfer (anonymised/limited access de-identified/personal)\n \n* If applicable, where the data will undergo any linkages to other data sets\n\n Please attach your data flow diagram to this application as an additional file. Please display only the data requested and any linked datasets, and not the entire project data flow. Documents can be uploaded in the Additional Files section of this form.\n", + "questionId": "safedatadataflowdiagramenclosed", + "defaultQuestion": 1 + } + ] + }, + { + "questionSetHeader": "Outputs dissemination plans", + "questionSetId": "safeoutputs-outputsdisseminationplans", + "questions": [ + { + "defaultQuestion": 1, + "questionId": "safeoutputsoutputsdisseminationplansproposalfindings", + "question": "How will proposal findings be disseminated, to what audience and in what format?", + "lockedQuestion": 1, + "input": { + "type": "textareaInput", + "required": true + }, + "validations": [ + { + "type": "isLength", + "params": [ + 1 + ], + "message": "Please enter a value" + } + ], + "guidance": "" + }, + { + "question": "Please include any milestones for outputs dissemination.", + "input": { + "type": "textareaInput", + "required": true + }, + "validations": [ + { + "type": "isLength", + "params": [ + 1 + ], + "message": "Please enter a value" + } + ], + "lockedQuestion": 1, + "defaultQuestion": 1, + "questionId": "safeoutputsoutputsdisseminationplansmilestones", + "guidance": "" + }, + { + "defaultQuestion": 1, + "questionId": "safeoutputsoutputsdisseminationplansdisclosurecontrolpolicy", + "question": "What steps will be taken to ensure that individuals cannot be identified? Please describe what disclosure control policy will be applied.", + "lockedQuestion": 1, + "validations": [ + { + "type": "isLength", + "params": [ + 1 + ], + "message": "Please enter a value" + } + ], + "input": { + "required": true, + "type": "textareaInput" + }, + "guidance": "" + }, + { + "questionId": "safeoutputsoutputsdisseminationplansoutputmanipulation", + "defaultQuestion": 1, + "input": { + "type": "textareaInput" + }, + "lockedQuestion": 0, + "question": "Could the outputs of the use of this data be manipulated to serve purposes that are not in the public interest?", + "guidance": "A data use purpose cannot be beneficial where the harm which would result from its output outweighs the public benefit.\n\nThe benefit aspect requires that the purpose must be beneficial and any risks that result from the purpose must not outweigh any benefits. The public aspect requires that the purpose should benefit the public, or a sufficient section of the public, and any private or commercial benefit should be proportionately balanced with the benefits to the public. Any private benefit should be incidental to the public benefit. Please indicate if outputs of the use of this data could serve for commercial interests or other purposes that are not in the public interest.\n\nPlease note that solely commercial benefits will not satisfy the public aspect of the public benefit requirement.\n\n---\n\n\n**This guidance is aligned with: ** \n\n\n![Test image](https://storage.googleapis.com/hdruk-gateway_non-prod-cms/web-assets/NDG-logo-small.png)" } - ] + ] + }, + { + "questionSetId": "safeoutputs-retention", + "questionSetHeader": "Retention", + "questions": [ + { + "question": "Please state the date until which you will retain the data", + "guidance": "Please state how long you intend to retain the data relating to your proposal.", + "lockedQuestion": 0, + "validations": [ + { + "type": "isLength", + "params": [ + 1 + ], + "message": "Please enter a value" + } + ], + "input": { + "required": true, + "type": "datePickerCustom" + }, + "defaultQuestion": 1, + "questionId": "safeoutputs-dataretention-retaindatadate" + }, + { + "question": "Please indicate the reason for this date", + "lockedQuestion": 0, + "input": { + "type": "textareaInput" + }, + "defaultQuestion": 1, + "questionId": "safeoutputsdataretentionretaindatadatereason", + "guidance": "" + }, + { + "lockedQuestion": 0, + "input": { + "type": "textareaInput" + }, + "question": "Please provide details of any permissions that will need to apply for an extension during this period in order to retain a legal basis to hold the data (e.g. section 251)", + "questionId": "safeoutputsdataretentionretaindataextensionpermissions", + "defaultQuestion": 1, + "guidance": "" + }, + { + "question": "Please confirm you will only use the data provided for the purpose specified in the Data Sharing Agreement", + "input": { + "options": [ + { + "value": "I confirm", + "text": "I confirm" + } + ], + "label": "Please confirm you will only use the data provided for the purpose specified in the Data Sharing Agreement", + "type": "checkboxOptionsInput" + }, + "lockedQuestion": 0, + "defaultQuestion": 1, + "questionId": "safeoutputsdataretentionconfirmpurpose", + "guidance": "" + } + ] + }, + { + "questionSetHeader": "Archiving", + "questionSetId": "safeoutputs-archiving", + "questions": [ + { + "guidance": "Please provide details of how the data/files will be disposed of at the end of the period specified above. You might refer to any relevant disposal or destruction policies held by your organisation, by summarising the relevant section from the policy or including a URL and indicating which section is relevant.", + "question": "What method of destruction will be used when this period has expired?", + "lockedQuestion": 0, + "validations": [ + { + "message": "Please enter a value", + "params": [ + 1 + ], + "type": "isLength" + } + ], + "input": { + "required": true, + "type": "textareaInput" + }, + "defaultQuestion": 1, + "questionId": "safeoutputsdataretentiondestructionmethod" + }, + { + "questionId": "safeoutputsdataretentiondestructionevidence", + "defaultQuestion": 1, + "input": { + "type": "textareaInput" + }, + "lockedQuestion": 0, + "guidance": "Please confirm what evidence will be obtained following that destruction, if appropriate.", + "question": "What evidence will be provided that destruction has occurred and when?" + } + ] + }, + { + "questions": [ + { + "question": "Full name", + "guidance": "Please provide the name of the person to whom we should send the invoice.", + "input": { + "type": "textInput", + "required": true + }, + "validations": [ + { + "message": "Please enter a value", + "params": [ + 1 + ], + "type": "isLength" + } + ], + "lockedQuestion": 0, + "defaultQuestion": 1, + "questionId": "additionalinformationinvoicecontactfullname" + }, + { + "question": "Job title", + "guidance": "Please provide the job title for the person to whom we should send the invoice.", + "lockedQuestion": 0, + "validations": [ + { + "type": "isLength", + "params": [ + 1 + ], + "message": "Please enter a value" + } + ], + "input": { + "type": "textInput", + "required": true + }, + "defaultQuestion": 1, + "questionId": "additionalinformationinvoicecontactjobtitle" + }, + { + "defaultQuestion": 1, + "questionId": "additionalinformationinvoicecontactaddressline1", + "guidance": "Please provide the business address for the person to whom we should send the invoice.", + "question": "Registered address (line 1)", + "input": { + "required": true, + "type": "textInput" + }, + "validations": [ + { + "message": "Please enter a value", + "params": [ + 1 + ], + "type": "isLength" + } + ], + "lockedQuestion": 0 + }, + { + "input": { + "type": "textInput" + }, + "lockedQuestion": 0, + "question": "Registered address (line 2)", + "guidance": "Please include the organisation's business address.", + "questionId": "additionalinformationinvoicecontactaddressline2", + "defaultQuestion": 1 + }, + { + "questionId": "additionalinformationinvoicecontactcity", + "defaultQuestion": 1, + "lockedQuestion": 0, + "validations": [ + { + "message": "Please enter a value", + "params": [ + 1 + ], + "type": "isLength" + } + ], + "input": { + "type": "textInput", + "required": true + }, + "question": "City", + "guidance": "Please specify the city where the organisation is located" + }, + { + "guidance": "Please include the organisation's business address postcode", + "question": "Postcode", + "lockedQuestion": 0, + "input": { + "type": "textInput", + "required": true + }, + "validations": [ + { + "message": "Please enter a value", + "params": [ + 1 + ], + "type": "isLength" + } + ], + "defaultQuestion": 1, + "questionId": "additionalinformationinvoicecontactpostcode" + }, + { + "defaultQuestion": 1, + "questionId": "additionalinformationinvoicecontactcountry", + "guidance": "Please specify the country where the organisation is located.", + "question": "Country", + "input": { + "type": "textInput", + "required": true + }, + "validations": [ + { + "params": [ + 1 + ], + "type": "isLength", + "message": "Please enter a value" + } + ], + "lockedQuestion": 0 + }, + { + "questionId": "additionalinformationinvoicecontacttelephone", + "defaultQuestion": 1, + "input": { + "type": "textInput" + }, + "lockedQuestion": 0, + "guidance": "Please provide the telephone number for the person to whom we should send the invoice.", + "question": "Telephone" + }, + { + "guidance": "Please provide an email address for the person to whom we should send the invoice.", + "question": "Email", + "lockedQuestion": 0, + "validations": [ + { + "params": [ + 1 + ], + "type": "isLength", + "message": "Please enter a value" + }, + { + "type": "isEmail" + } + ], + "input": { + "required": true, + "type": "textInput" + }, + "defaultQuestion": 1, + "questionId": "additionalinformationinvoicecontactemail" + } + ], + "questionSetHeader": "Invoice contact", + "questionSetId": "additionalinformationfiles-invoicecontact" + }, + { + "questions": [ + { + "defaultQuestion": 1, + "questionId": "additionalinformationdsasignatoryfullname", + "guidance": "Please provide the name of the person who can sign the Data Sharing Agreement on behalf of your organisation.", + "question": "Full name", + "lockedQuestion": 0, + "validations": [ + { + "type": "isLength", + "params": [ + 1 + ], + "message": "Please enter a value" + } + ], + "input": { + "type": "textInput", + "required": true + } + }, + { + "guidance": "Please provide the job title for the person who can sign the Data Sharing Agreement on behalf of your organisation.", + "question": "Job title", + "lockedQuestion": 0, + "input": { + "type": "textInput", + "required": true + }, + "validations": [ + { + "params": [ + 1 + ], + "type": "isLength", + "message": "Please enter a value" + } + ], + "defaultQuestion": 1, + "questionId": "additionalinformationdsasignatoryjobtitle" + }, + { + "input": { + "required": true, + "type": "textInput" + }, + "validations": [ + { + "message": "Please enter a value", + "type": "isLength", + "params": [ + 1 + ] + } + ], + "lockedQuestion": 0, + "question": "Registered address (line 1)", + "guidance": "Please provide the business address for the person who can sign the Data Sharing Agreement on behalf of your organisation.", + "questionId": "additionalinformationdsasignatoryaddressline1", + "defaultQuestion": 1 + }, + { + "questionId": "additionalinformationdsasignatoryaddressline2", + "defaultQuestion": 1, + "lockedQuestion": 0, + "input": { + "type": "textInput" + }, + "question": "Registered address (line 2)", + "guidance": "Please include the organisation's business address." + }, + { + "input": { + "required": true, + "type": "textInput" + }, + "validations": [ + { + "params": [ + 1 + ], + "type": "isLength", + "message": "Please enter a value" + } + ], + "lockedQuestion": 0, + "guidance": "Please specify the city where the organisation is located", + "question": "City", + "questionId": "additionalinformationdsasignatorycity", + "defaultQuestion": 1 + }, + { + "lockedQuestion": 0, + "validations": [ + { + "params": [ + 1 + ], + "type": "isLength", + "message": "Please enter a value" + } + ], + "input": { + "required": true, + "type": "textInput" + }, + "question": "Postcode", + "guidance": "Please include the organisation's business address postcode", + "questionId": "additionalinformationdsasignatorypostcode", + "defaultQuestion": 1 + }, + { + "questionId": "additionalinformationdsasignatorycountry", + "defaultQuestion": 1, + "validations": [ + { + "message": "Please enter a value", + "type": "isLength", + "params": [ + 1 + ] + } + ], + "input": { + "required": true, + "type": "textInput" + }, + "lockedQuestion": 0, + "question": "Country", + "guidance": "Please specify the country where the organisation is located." + }, + { + "question": "Telephone", + "guidance": "Please provide the telephone number for the person who can sign the Data Sharing Agreement on behalf of your organisation.", + "lockedQuestion": 0, + "input": { + "type": "textInput" + }, + "defaultQuestion": 1, + "questionId": "additionalinformationdsasignatorytelephone" + }, + { + "validations": [ + { + "type": "isLength", + "params": [ + 1 + ], + "message": "Please enter a value" + }, + { + "type": "isEmail" + } + ], + "input": { + "required": true, + "type": "textInput" + }, + "lockedQuestion": 0, + "question": "Email", + "guidance": "Please provide an email address for the person who can sign the Data Sharing Agreement on behalf of your organisation.", + "questionId": "additionalinformationdsasignatoryemail", + "defaultQuestion": 1 + } + ], + "questionSetId": "additionalinformationfiles-datasharingagreementsignatory", + "questionSetHeader": "Data Sharing Agreement signatory" + } + ] + }, + "languageCode": "en", + "updatedAt": { + "$date": { + "$numberLong": "1636469643586" + } } -} -git pus \ No newline at end of file + } \ No newline at end of file diff --git a/src/resources/questionbank/__mocks__/questionbank.js b/src/resources/questionbank/__mocks__/questionbank.js index 354f0941..e9c48506 100644 --- a/src/resources/questionbank/__mocks__/questionbank.js +++ b/src/resources/questionbank/__mocks__/questionbank.js @@ -15,7 +15,7 @@ export const globalDocument = { masterSchema: { questionSets: [ { - questionSetId: 'primaryapplicant', + questionSetId: 'safepeople-primaryapplicant', questionSetHeader: 'Primary applicant', questions: [ { diff --git a/src/resources/questionbank/__tests__/questionbank.service.test.js b/src/resources/questionbank/__tests__/questionbank.service.test.js index d3e7c0aa..155debe3 100644 --- a/src/resources/questionbank/__tests__/questionbank.service.test.js +++ b/src/resources/questionbank/__tests__/questionbank.service.test.js @@ -26,64 +26,191 @@ describe('Question Bank Service', function () { dataRequestRepositoryStubCreate.restore(); }); - it('No data request schema exists', async function () { - dataRequestRepositoryStubGet = sinon.stub(dataRequestRepository, 'getApplicationFormSchemas').returns([]); - dataRequestRepositoryStubCreate = sinon - .stub(dataRequestRepository, 'createApplicationFormSchema') - .returns(noSchemaExists.expectedSchema); - - const result = await questionBankService.getQuestionBankInfo(questionBank.publisherDocument._id); - - expect(result.questionStatus).toEqual(noSchemaExists.expectedSchema.questionStatus); - expect(result.guidance).toEqual(noSchemaExists.expectedSchema.guidance); - expect(result.countOfChanges).toEqual(noSchemaExists.expectedSchema.countOfChanges); - expect(result.masterSchema).toEqual(questionBank.globalDocument.masterSchema); + describe('getQuestionBankInfo', () => { + it('No data request schema exists', async function () { + dataRequestRepositoryStubGet = sinon.stub(dataRequestRepository, 'getApplicationFormSchemas').returns([]); + dataRequestRepositoryStubCreate = sinon + .stub(dataRequestRepository, 'createApplicationFormSchema') + .returns(noSchemaExists.expectedSchema); + + const result = await questionBankService.getQuestionBankInfo(questionBank.publisherDocument._id); + + expect(result.questionStatus).toEqual(noSchemaExists.expectedSchema.questionStatus); + expect(result.guidance).toEqual(noSchemaExists.expectedSchema.guidance); + expect(result.countOfChanges).toEqual(noSchemaExists.expectedSchema.countOfChanges); + expect(result.masterSchema).toEqual(questionBank.globalDocument.masterSchema); + }); + + it('Draft data request schema exists created through the customize form', async function () { + dataRequestRepositoryStubGet = sinon + .stub(dataRequestRepository, 'getApplicationFormSchemas') + .returns([draftSchemaNotCreatedThroughForm.dataRequestSchema]); + + const result = await questionBankService.getQuestionBankInfo(questionBank.publisherDocument._id); + + expect(result.questionStatus).toEqual(draftSchemaNotCreatedThroughForm.dataRequestSchema.questionStatus); + expect(result.guidance).toEqual(draftSchemaNotCreatedThroughForm.dataRequestSchema.guidance); + expect(result.countOfChanges).toEqual(draftSchemaNotCreatedThroughForm.dataRequestSchema.countOfChanges); + expect(result.masterSchema).toEqual(questionBank.globalDocument.masterSchema); + }); + + it('Active data request schema exists created through the customize form', async function () { + dataRequestRepositoryStubGet = sinon + .stub(dataRequestRepository, 'getApplicationFormSchemas') + .returns([activeSchemaCreatedThroughForm.dataRequestSchema]); + + dataRequestRepositoryStubCreate = sinon + .stub(dataRequestRepository, 'createApplicationFormSchema') + .returns(activeSchemaCreatedThroughForm.expectedSchema); + + const result = await questionBankService.getQuestionBankInfo(questionBank.publisherDocument._id); + + expect(result.masterSchema).toEqual(questionBank.globalDocument.masterSchema); + expect(result.guidance).toEqual(activeSchemaCreatedThroughForm.expectedSchema.guidance); + expect(result.questionStatus).toEqual(activeSchemaCreatedThroughForm.expectedSchema.questionStatus); + expect(result.countOfChanges).toEqual(activeSchemaCreatedThroughForm.expectedSchema.countOfChanges); + }); + + it('Active data request schema exists not created through the customize form', async function () { + dataRequestRepositoryStubGet = sinon + .stub(dataRequestRepository, 'getApplicationFormSchemas') + .returns([activeSchemaNotCreatedThroughForm.dataRequestSchema]); + + dataRequestRepositoryStubCreate = sinon + .stub(dataRequestRepository, 'createApplicationFormSchema') + .returns(activeSchemaNotCreatedThroughForm.expectedSchema); + + const result = await questionBankService.getQuestionBankInfo(questionBank.publisherDocument._id); + + expect(result.questionStatus).toEqual(activeSchemaNotCreatedThroughForm.expectedSchema.questionStatus); + expect(result.guidance).toEqual(activeSchemaNotCreatedThroughForm.expectedSchema.guidance); + expect(result.countOfChanges).toEqual(activeSchemaNotCreatedThroughForm.expectedSchema.countOfChanges); + expect(result.masterSchema).toEqual(questionBank.globalDocument.masterSchema); + }); }); - it('Draft data request schema exists created through the customize form', async function () { - dataRequestRepositoryStubGet = sinon - .stub(dataRequestRepository, 'getApplicationFormSchemas') - .returns([draftSchemaNotCreatedThroughForm.dataRequestSchema]); - - const result = await questionBankService.getQuestionBankInfo(questionBank.publisherDocument._id); - - expect(result.questionStatus).toEqual(draftSchemaNotCreatedThroughForm.dataRequestSchema.questionStatus); - expect(result.guidance).toEqual(draftSchemaNotCreatedThroughForm.dataRequestSchema.guidance); - expect(result.countOfChanges).toEqual(draftSchemaNotCreatedThroughForm.dataRequestSchema.countOfChanges); - expect(result.masterSchema).toEqual(questionBank.globalDocument.masterSchema); - }); - - it('Active data request schema exists created through the customize form', async function () { - dataRequestRepositoryStubGet = sinon - .stub(dataRequestRepository, 'getApplicationFormSchemas') - .returns([activeSchemaCreatedThroughForm.dataRequestSchema]); - - dataRequestRepositoryStubCreate = sinon - .stub(dataRequestRepository, 'createApplicationFormSchema') - .returns(activeSchemaCreatedThroughForm.expectedSchema); - - const result = await questionBankService.getQuestionBankInfo(questionBank.publisherDocument._id); - - expect(result.masterSchema).toEqual(questionBank.globalDocument.masterSchema); - expect(result.guidance).toEqual(activeSchemaCreatedThroughForm.expectedSchema.guidance); - expect(result.questionStatus).toEqual(activeSchemaCreatedThroughForm.expectedSchema.questionStatus); - expect(result.countOfChanges).toEqual(activeSchemaCreatedThroughForm.expectedSchema.countOfChanges); - }); - - it('Active data request schema exists not created through the customize form', async function () { - dataRequestRepositoryStubGet = sinon - .stub(dataRequestRepository, 'getApplicationFormSchemas') - .returns([activeSchemaNotCreatedThroughForm.dataRequestSchema]); - - dataRequestRepositoryStubCreate = sinon - .stub(dataRequestRepository, 'createApplicationFormSchema') - .returns(activeSchemaNotCreatedThroughForm.expectedSchema); - - const result = await questionBankService.getQuestionBankInfo(questionBank.publisherDocument._id); - - expect(result.questionStatus).toEqual(activeSchemaNotCreatedThroughForm.expectedSchema.questionStatus); - expect(result.guidance).toEqual(activeSchemaNotCreatedThroughForm.expectedSchema.guidance); - expect(result.countOfChanges).toEqual(activeSchemaNotCreatedThroughForm.expectedSchema.countOfChanges); - expect(result.masterSchema).toEqual(questionBank.globalDocument.masterSchema); + describe('revertChanges', () => { + let publisherStub; + + const updateSchemaStub = sinon.stub(dataRequestRepository, 'updateApplicationFormSchemaById'); + + afterEach(function () { + publisherStub.restore(); + }); + + it('should throw an error if no data request schemas are found for a given publisher', async () => { + publisherStub = sinon.stub(publisherService, 'getPublisher').resolves(); + sinon.stub(dataRequestRepository, 'getApplicationFormSchemas').resolves([]); + + try { + await questionBankService.revertChanges('testId'); + } catch (err) { + expect(err.message).toEqual('This publisher has no data request schemas'); + } + }); + + it('should reset the entire form if no questionSetIds param passed', async () => { + publisherStub = sinon.stub(publisherService, 'getPublisher').resolves(); + dataRequestRepositoryStubGet = sinon.stub(dataRequestRepository, 'getApplicationFormSchemas').returns([ + { + _id: '5f3f98068af2ef61552e1d01', + guidance: { + safepeopleprimaryapplicantfullname: 'What is your full name?', + }, + questionStatus: { + safepeopleprimaryapplicantfullname: 0, + safepeopleprimaryapplicantjobtitle: 0, + safepeopleprimaryapplicanttelephone: 0, + safepeopleotherindividualsfullname: 0, + safepeopleotherindividualsjobtitle: 0, + safepeopleotherindividualsorganisation: 0, + }, + unpublishedGuidance: ['safepeopleprimaryapplicantfullname'], + }, + { + _id: '5f3f98068af2ef61552e1d02', + guidance: {}, + questionStatus: { + safepeopleprimaryapplicantfullname: 1, + safepeopleprimaryapplicantjobtitle: 1, + safepeopleprimaryapplicanttelephone: 1, + safepeopleotherindividualsfullname: 1, + safepeopleotherindividualsjobtitle: 1, + safepeopleotherindividualsorganisation: 1, + }, + unpublishedGuidance: [], + }, + ]); + + await questionBankService.revertChanges(questionBank.publisherDocument._id); + + expect( + updateSchemaStub.calledWith('5f3f98068af2ef61552e1d01', { + questionStatus: { + safepeopleprimaryapplicantfullname: 1, + safepeopleprimaryapplicantjobtitle: 1, + safepeopleprimaryapplicanttelephone: 1, + safepeopleotherindividualsfullname: 1, + safepeopleotherindividualsjobtitle: 1, + safepeopleotherindividualsorganisation: 1, + }, + unpublishedGuidance: [], + guidance: {}, + countOfChanges: 0, + }) + ).toBe(true); + }); + + it('should reset one section if questionSetIds param passed', async () => { + publisherStub = sinon.stub(publisherService, 'getPublisher').resolves(); + dataRequestRepositoryStubGet = sinon.stub(dataRequestRepository, 'getApplicationFormSchemas').returns([ + { + _id: '5f3f98068af2ef61552e1d01', + guidance: { + safepeopleprimaryapplicantfullname: 'What is your full name?', + }, + questionStatus: { + safepeopleprimaryapplicantfullname: 0, + safepeopleprimaryapplicantjobtitle: 0, + safepeopleprimaryapplicanttelephone: 0, + safeprojectprojectdetailstitle: 0, + safeprojectprojectdetailstype: 0, + safeprojectprojectdetailsneworexisting: 0, + }, + unpublishedGuidance: ['safepeopleprimaryapplicantfullname'], + }, + { + _id: '5f3f98068af2ef61552e1d02', + guidance: {}, + questionStatus: { + safepeopleprimaryapplicantfullname: 1, + safepeopleprimaryapplicantjobtitle: 1, + safepeopleprimaryapplicanttelephone: 1, + safeprojectprojectdetailstitle: 1, + safeprojectprojectdetailstype: 1, + safeprojectprojectdetailsneworexisting: 1, + }, + unpublishedGuidance: [], + }, + ]); + + await questionBankService.revertChanges(questionBank.publisherDocument._id, 'safepeople'); + + expect( + updateSchemaStub.calledWith('5f3f98068af2ef61552e1d01', { + questionStatus: { + safepeopleprimaryapplicantfullname: 1, + safepeopleprimaryapplicantjobtitle: 1, + safepeopleprimaryapplicanttelephone: 1, + safeprojectprojectdetailstitle: 0, + safeprojectprojectdetailstype: 0, + safeprojectprojectdetailsneworexisting: 0, + }, + unpublishedGuidance: [], + guidance: {}, + countOfChanges: 3, + }) + ).toBe(true); + }); }); }); diff --git a/src/resources/questionbank/questionbank.controller.js b/src/resources/questionbank/questionbank.controller.js index 27ce2746..2e82983d 100644 --- a/src/resources/questionbank/questionbank.controller.js +++ b/src/resources/questionbank/questionbank.controller.js @@ -1,3 +1,4 @@ +import { NextPage } from '@hubspot/api-client/lib/codegen/cms/hubdb/api'; import Controller from '../base/controller'; import { logger } from '../utilities/logger'; @@ -69,14 +70,9 @@ export default class QuestionbankController extends Controller { async revertChanges(req, res) { try { const { publisherId } = req.params; - const { questionSet } = req.query; + const { page } = req.query; - let target; - if (questionSet) { - target = questionSet; - } - - await this.questionbankService.revertChanges(publisherId, target); + await this.questionbankService.revertChanges(publisherId, page); return res.status(200).json({ success: true }); } catch (err) { diff --git a/src/resources/questionbank/questionbank.service.js b/src/resources/questionbank/questionbank.service.js index 1e8283af..01669d99 100644 --- a/src/resources/questionbank/questionbank.service.js +++ b/src/resources/questionbank/questionbank.service.js @@ -214,11 +214,14 @@ export default class QuestionbankService { } // Revert updates for a given question panel ELSE revert all updates + let countOfChanges = 0; if (target) { const panelQuestions = await this.getPanelQuestions(target); const updates = Object.keys(previousState).filter(key => !panelQuestions.includes(key)); updates.forEach(key => { + if (previousState[key] !== dataRequestSchemas[0].questionStatus[key]) countOfChanges += 1; + previousState[key] = dataRequestSchemas[0].questionStatus[key]; if (dataRequestSchemas[0].unpublishedGuidance.includes(key)) { @@ -235,6 +238,7 @@ export default class QuestionbankService { questionStatus: previousState, unpublishedGuidance, guidance, + countOfChanges, }); return; @@ -260,13 +264,18 @@ export default class QuestionbankService { const global = await this.globalService.getGlobal({ localeId: 'en-gb' }); const questionSets = global.masterSchema.questionSets; - const panelQuestions = questionSets.filter(questionSet => questionSet.questionSetId === target); + const panelQuestions = questionSets.filter(questionSet => questionSet.questionSetId.includes(target)); - if (panelQuestions.length === 0) { - throw new Error('This is not a valid questionSetId'); + if (!panelQuestions) { + throw new Error('Invalid page identifier: ' + target); } - const questionIds = panelQuestions[0].questions.map(question => question.questionId); + let questions = []; + panelQuestions.forEach(panel => { + questions.push(...panel.questions); + }); + + const questionIds = questions.map(question => question.questionId); return questionIds; } diff --git a/src/resources/user/__tests__/getCollaboratorsCohorts.test.js b/src/resources/user/__tests__/getCollaboratorsCohorts.test.js deleted file mode 100644 index bb626688..00000000 --- a/src/resources/user/__tests__/getCollaboratorsCohorts.test.js +++ /dev/null @@ -1,35 +0,0 @@ -import dbHandler from '../../../config/in-memory-db'; -import {mockCohorts} from '../__mocks__/cohorts.data'; - -const {getCollaboratorsCohorts} = require('../user.service'); - - -beforeAll(async () => { - await dbHandler.connect(); - await dbHandler.loadData({ cohorts: mockCohorts }); -}); - -afterAll(async () => { - await dbHandler.clearDatabase(); - await dbHandler.closeDatabase(); -}); - -describe('getCollaboratorsCohorts tests', () => { - it('should return values', async () => { - const currentUserId = 8470291714590257; - const filter = currentUserId ? { uploaders: currentUserId } : {}; - - const result = await getCollaboratorsCohorts(filter, currentUserId); - expect(result.length > 0).toBe(true); - expect(typeof result).toBe('object'); - }); - - it('should return values', async () => { - const currentUserId = null; - const filter = currentUserId ? { uploaders: currentUserId } : {}; - - const result = await getCollaboratorsCohorts(filter, currentUserId); - expect(result.length > 0).toBe(true); - expect(typeof result).toBe('object'); - }); -}); \ No newline at end of file From c001e5056fbf86d1577dcaf9ef4b2d9054348909 Mon Sep 17 00:00:00 2001 From: Callum Reekie Date: Tue, 31 May 2022 10:49:48 +0100 Subject: [PATCH 33/67] remove unused import --- src/resources/questionbank/questionbank.controller.js | 1 - 1 file changed, 1 deletion(-) diff --git a/src/resources/questionbank/questionbank.controller.js b/src/resources/questionbank/questionbank.controller.js index 2e82983d..f6caff38 100644 --- a/src/resources/questionbank/questionbank.controller.js +++ b/src/resources/questionbank/questionbank.controller.js @@ -1,4 +1,3 @@ -import { NextPage } from '@hubspot/api-client/lib/codegen/cms/hubdb/api'; import Controller from '../base/controller'; import { logger } from '../utilities/logger'; From 48cc69a6fb01370726943456d7d4a42265fd7706 Mon Sep 17 00:00:00 2001 From: Dan Nita Date: Mon, 6 Jun 2022 11:55:26 +0300 Subject: [PATCH 34/67] enable and disable caching --- .../datarequest/datarequest.controller.js | 39 ++++++++++--------- src/resources/message/message.controller.js | 39 ++++++++++--------- 2 files changed, 42 insertions(+), 36 deletions(-) diff --git a/src/resources/datarequest/datarequest.controller.js b/src/resources/datarequest/datarequest.controller.js index 661319d8..9704c9a1 100644 --- a/src/resources/datarequest/datarequest.controller.js +++ b/src/resources/datarequest/datarequest.controller.js @@ -453,24 +453,27 @@ export default class DataRequestController extends Controller { } // publish the message to Redis PubSub - let publisherDetails = await PublisherModel.findOne({ _id: ObjectId(accessRecord.publisherObj._id) }).lean(); - - if (accessRecord.applicationStatus === constants.applicationStatuses.SUBMITTED - && publisherDetails['dar-integration']['enabled']) { - const pubSubMessage = { - id: "", - type: "5safes", - publisherInfo: { - id: accessRecord.publisherObj._id, - name: accessRecord.publisherObj.name, - }, - data: { - dataRequestId: accessRecord._id, - createdDate: accessRecord.createdAt, - data: accessRecord.questionAnswers, - } - }; - await publishMessageToChannel(process.env.CACHE_CHANNEL, JSON.stringify(pubSubMessage)); + const cacheEnabled = process.env.CACHE_ENABLED || false; + if(cacheEnabled) { + let publisherDetails = await PublisherModel.findOne({ _id: ObjectId(accessRecord.publisherObj._id) }).lean(); + + if (accessRecord.applicationStatus === constants.applicationStatuses.SUBMITTED + && publisherDetails['dar-integration']['enabled']) { + const pubSubMessage = { + id: "", + type: "5safes", + publisherInfo: { + id: accessRecord.publisherObj._id, + name: accessRecord.publisherObj.name, + }, + data: { + dataRequestId: accessRecord._id, + createdDate: accessRecord.createdAt, + data: accessRecord.questionAnswers, + } + }; + await publishMessageToChannel(process.env.CACHE_CHANNEL, JSON.stringify(pubSubMessage)); + } } // 11. Return aplication and successful response diff --git a/src/resources/message/message.controller.js b/src/resources/message/message.controller.js index 1a0933c5..50bdad22 100644 --- a/src/resources/message/message.controller.js +++ b/src/resources/message/message.controller.js @@ -187,25 +187,28 @@ module.exports = { } // publish the message to Redis PubSub - let publisherDetails = await PublisherModel.findOne({ _id: ObjectId(tools[0].publisher._id) }).lean(); + const cacheEnabled = process.env.CACHE_ENABLED || false; + if(cacheEnabled) { + let publisherDetails = await PublisherModel.findOne({ _id: ObjectId(tools[0].publisher._id) }).lean(); - if (publisherDetails['dar-integration']['enabled']) { - const pubSubMessage = { - id: "", - type: "enquiry", - publisherInfo: { - id: publisherDetails._id, - name: publisherDetails.name, - }, - data: { - topicId: topicObj._id, - messageId: message.messageID, - createdDate: message.createdDate, - data: req.body.firstMessage, - - } - }; - await publishMessageToChannel(process.env.CACHE_CHANNEL, JSON.stringify(pubSubMessage)); + if (publisherDetails['dar-integration']['enabled']) { + const pubSubMessage = { + id: "", + type: "enquiry", + publisherInfo: { + id: publisherDetails._id, + name: publisherDetails.name, + }, + data: { + topicId: topicObj._id, + messageId: message.messageID, + createdDate: message.createdDate, + data: req.body.firstMessage, + + } + }; + await publishMessageToChannel(process.env.CACHE_CHANNEL, JSON.stringify(pubSubMessage)); + } } } From 4e558e01bb70245e069993ed88b7e154f1363562 Mon Sep 17 00:00:00 2001 From: Dan Nita Date: Mon, 6 Jun 2022 13:03:16 +0300 Subject: [PATCH 35/67] enable cache --- src/resources/message/message.controller.js | 7 ++++--- 1 file changed, 4 insertions(+), 3 deletions(-) diff --git a/src/resources/message/message.controller.js b/src/resources/message/message.controller.js index 50bdad22..3fe013cc 100644 --- a/src/resources/message/message.controller.js +++ b/src/resources/message/message.controller.js @@ -187,8 +187,8 @@ module.exports = { } // publish the message to Redis PubSub - const cacheEnabled = process.env.CACHE_ENABLED || false; - if(cacheEnabled) { + //const cacheEnabled = process.env.CACHE_ENABLED || false; + //if(cacheEnabled) { let publisherDetails = await PublisherModel.findOne({ _id: ObjectId(tools[0].publisher._id) }).lean(); if (publisherDetails['dar-integration']['enabled']) { @@ -207,9 +207,10 @@ module.exports = { } }; + console.log(pubSubMessage); await publishMessageToChannel(process.env.CACHE_CHANNEL, JSON.stringify(pubSubMessage)); } - } + //} } // 19. Return successful response with message data From efab2d1519c924b6f93c7b5a5dfa54d29735b722 Mon Sep 17 00:00:00 2001 From: Dan Nita Date: Mon, 6 Jun 2022 13:33:28 +0300 Subject: [PATCH 36/67] rollback cache --- src/resources/message/message.controller.js | 7 +++---- 1 file changed, 3 insertions(+), 4 deletions(-) diff --git a/src/resources/message/message.controller.js b/src/resources/message/message.controller.js index 3fe013cc..50bdad22 100644 --- a/src/resources/message/message.controller.js +++ b/src/resources/message/message.controller.js @@ -187,8 +187,8 @@ module.exports = { } // publish the message to Redis PubSub - //const cacheEnabled = process.env.CACHE_ENABLED || false; - //if(cacheEnabled) { + const cacheEnabled = process.env.CACHE_ENABLED || false; + if(cacheEnabled) { let publisherDetails = await PublisherModel.findOne({ _id: ObjectId(tools[0].publisher._id) }).lean(); if (publisherDetails['dar-integration']['enabled']) { @@ -207,10 +207,9 @@ module.exports = { } }; - console.log(pubSubMessage); await publishMessageToChannel(process.env.CACHE_CHANNEL, JSON.stringify(pubSubMessage)); } - //} + } } // 19. Return successful response with message data From 339c0f2ecf864041972803d1a63fe90ec27fc0f7 Mon Sep 17 00:00:00 2001 From: Dan Nita Date: Mon, 6 Jun 2022 17:39:12 +0300 Subject: [PATCH 37/67] update checking cache connection --- src/services/cachePubSub/cachePubSubClient.js | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/src/services/cachePubSub/cachePubSubClient.js b/src/services/cachePubSub/cachePubSubClient.js index 615bb322..008dc33e 100644 --- a/src/services/cachePubSub/cachePubSubClient.js +++ b/src/services/cachePubSub/cachePubSubClient.js @@ -4,7 +4,9 @@ const client = createClient({ }); export const publishMessageToChannel = async (channel, message) => { - await client.connect(); + if (!client.isOpen) { + await client.connect(); + } client.on("connect", () => console.log("Redis cache is ready")); client.on("error", (err) => console.log('Redis Client Error', err)); From 21f51cd55f13df896315129dec8f70bbb706970f Mon Sep 17 00:00:00 2001 From: Dan Nita Date: Thu, 9 Jun 2022 12:40:11 +0300 Subject: [PATCH 38/67] try and catch --- src/services/cachePubSub/cachePubSubClient.js | 29 ++++++++++++------- 1 file changed, 18 insertions(+), 11 deletions(-) diff --git a/src/services/cachePubSub/cachePubSubClient.js b/src/services/cachePubSub/cachePubSubClient.js index 008dc33e..30fa7f52 100644 --- a/src/services/cachePubSub/cachePubSubClient.js +++ b/src/services/cachePubSub/cachePubSubClient.js @@ -1,16 +1,23 @@ import { createClient } from 'redis'; -const client = createClient({ - url: process.env.CACHE_URL -}); export const publishMessageToChannel = async (channel, message) => { - if (!client.isOpen) { - await client.connect(); - } - - client.on("connect", () => console.log("Redis cache is ready")); - client.on("error", (err) => console.log('Redis Client Error', err)); - client.on('ready', () => console.log('redis is running')); + try { + const client = createClient({ + url: process.env.CACHE_URL + }); - await client.publish(channel, message); + if (!client.isOpen) { + await client.connect(); + } + + client.on("connect", () => console.log("Redis cache is ready")); + client.on("error", (err) => console.log('Redis Client Error', err)); + client.on('ready', () => console.log('redis is running')); + + await client.publish(channel, message); + + } catch (e) { + console.log(e); + throw new Error(e.message); + } } \ No newline at end of file From 5448f32a8f42f9a23a0b39d5cb71f8275bdeabe9 Mon Sep 17 00:00:00 2001 From: Dan Nita Date: Mon, 13 Jun 2022 10:05:47 +0100 Subject: [PATCH 39/67] move to redis pubsub to gcp pubsub with retry policy --- .../datarequest/datarequest.controller.js | 4 +- src/resources/message/message.controller.js | 6 +- src/services/cachePubSub/cachePubSubClient.js | 1 + src/services/google/PubSubWithRetryService.js | 70 +++++++++++++++++++ 4 files changed, 77 insertions(+), 4 deletions(-) create mode 100644 src/services/google/PubSubWithRetryService.js diff --git a/src/resources/datarequest/datarequest.controller.js b/src/resources/datarequest/datarequest.controller.js index 9704c9a1..979c5dab 100644 --- a/src/resources/datarequest/datarequest.controller.js +++ b/src/resources/datarequest/datarequest.controller.js @@ -16,7 +16,7 @@ import { logger } from '../utilities/logger'; import { UserModel } from '../user/user.model'; import { PublisherModel } from '../publisher/publisher.model'; import { dataUseRegisterController } from '../dataUseRegister/dependency'; -import { publishMessageToChannel } from '../../services/cachePubSub/cachePubSubClient'; +import { publishMessageToPubSub } from '../../services/google/PubSubService'; const logCategory = 'Data Access Request'; const bpmController = require('../bpmnworkflow/bpmnworkflow.controller'); @@ -472,7 +472,7 @@ export default class DataRequestController extends Controller { data: accessRecord.questionAnswers, } }; - await publishMessageToChannel(process.env.CACHE_CHANNEL, JSON.stringify(pubSubMessage)); + await publishMessageToPubSub(process.env.PUBSUB_TOPIC_ENQUIRY, JSON.stringify(pubSubMessage)); } } diff --git a/src/resources/message/message.controller.js b/src/resources/message/message.controller.js index 50bdad22..df8d0566 100644 --- a/src/resources/message/message.controller.js +++ b/src/resources/message/message.controller.js @@ -9,7 +9,8 @@ import { Data as ToolModel } from '../tool/data.model'; import constants from '../utilities/constants.util'; import { dataRequestService } from '../datarequest/dependency'; import { activityLogService } from '../activitylog/dependency'; -import { publishMessageToChannel } from '../../services/cachePubSub/cachePubSubClient'; +import { publishMessageToPubSub } from '../../services/google/PubSubService'; +import { publishMessageWithRetryToPubSub } from '../../services/google/PubSubWithRetryService'; import { PublisherModel } from '../publisher/publisher.model'; const topicController = require('../topic/topic.controller'); @@ -207,7 +208,8 @@ module.exports = { } }; - await publishMessageToChannel(process.env.CACHE_CHANNEL, JSON.stringify(pubSubMessage)); + // await publishMessageToPubSub(process.env.PUBSUB_TOPIC_ENQUIRY, JSON.stringify(pubSubMessage)); + await publishMessageWithRetryToPubSub(process.env.PUBSUB_TOPIC_ENQUIRY, JSON.stringify(pubSubMessage)); } } diff --git a/src/services/cachePubSub/cachePubSubClient.js b/src/services/cachePubSub/cachePubSubClient.js index 30fa7f52..215b7c1e 100644 --- a/src/services/cachePubSub/cachePubSubClient.js +++ b/src/services/cachePubSub/cachePubSubClient.js @@ -1,5 +1,6 @@ import { createClient } from 'redis'; +// await publishMessageToChannel(process.env.CACHE_CHANNEL, JSON.stringify(pubSubMessage)); export const publishMessageToChannel = async (channel, message) => { try { const client = createClient({ diff --git a/src/services/google/PubSubWithRetryService.js b/src/services/google/PubSubWithRetryService.js new file mode 100644 index 00000000..2bc7822f --- /dev/null +++ b/src/services/google/PubSubWithRetryService.js @@ -0,0 +1,70 @@ +// example params in .env file: +// PUBSUB_PROJECT_ID='hdruk-gateway-dev' +// PUBSUB_TOPIC_ENQUIRY='enquiry' +// PUBSUB_SUBSCRIPTION_ID='enquiry-sub' + +const {v1} = require('@google-cloud/pubsub'); + +const publisherClient = new v1.PublisherClient({ + projectId: process.env.PUBSUB_PROJECT_ID, +}); + +export const publishMessageWithRetryToPubSub = async (topicName, message) => { + const formattedTopic = publisherClient.projectTopicPath( + process.env.PUBSUB_PROJECT_ID, + topicName + ); + + const dataBuffer = Buffer.from(JSON.stringify(message)); + const messagesElement = { + data: dataBuffer, + }; + const messages = [messagesElement]; + + // Build the request + const request = { + topic: formattedTopic, + messages, + }; + + // Retry settings control how the publisher handles retryable failures. Default values are shown. + // The `retryCodes` array determines which grpc errors will trigger an automatic retry. + // The `backoffSettings` object lets you specify the behaviour of retries over time. + const retrySettings = { + retryCodes: [ + 10, // 'ABORTED' + 1, // 'CANCELLED', + 4, // 'DEADLINE_EXCEEDED' + 13, // 'INTERNAL' + 8, // 'RESOURCE_EXHAUSTED' + 14, // 'UNAVAILABLE' + 2, // 'UNKNOWN' + ], + backoffSettings: { + // The initial delay time, in milliseconds, between the completion + // of the first failed request and the initiation of the first retrying request. + initialRetryDelayMillis: 100, + // The multiplier by which to increase the delay time between the completion + // of failed requests, and the initiation of the subsequent retrying request. + retryDelayMultiplier: 1.3, + // The maximum delay time, in milliseconds, between requests. + // When this value is reached, retryDelayMultiplier will no longer be used to increase delay time. + maxRetryDelayMillis: 60000, + // The initial timeout parameter to the request. + initialRpcTimeoutMillis: 5000, + // The multiplier by which to increase the timeout parameter between failed requests. + rpcTimeoutMultiplier: 1.0, + // The maximum timeout parameter, in milliseconds, for a request. When this value is reached, + // rpcTimeoutMultiplier will no longer be used to increase the timeout. + maxRpcTimeoutMillis: 600000, + // The total time, in milliseconds, starting from when the initial request is sent, + // after which an error will be returned, regardless of the retrying attempts made meanwhile. + totalTimeoutMillis: 600000, + }, + }; + + const [response] = await publisherClient.publish(request, { + retry: retrySettings, + }); + console.log(`Message ${response.messageIds} published.`); +} \ No newline at end of file From 71ee477f4921e08b4ff39bf54b149c1453867926 Mon Sep 17 00:00:00 2001 From: Dan Nita Date: Mon, 13 Jun 2022 10:08:31 +0100 Subject: [PATCH 40/67] move --- src/resources/datarequest/datarequest.controller.js | 4 ++-- src/resources/message/message.controller.js | 2 -- 2 files changed, 2 insertions(+), 4 deletions(-) diff --git a/src/resources/datarequest/datarequest.controller.js b/src/resources/datarequest/datarequest.controller.js index 979c5dab..7b523560 100644 --- a/src/resources/datarequest/datarequest.controller.js +++ b/src/resources/datarequest/datarequest.controller.js @@ -16,7 +16,7 @@ import { logger } from '../utilities/logger'; import { UserModel } from '../user/user.model'; import { PublisherModel } from '../publisher/publisher.model'; import { dataUseRegisterController } from '../dataUseRegister/dependency'; -import { publishMessageToPubSub } from '../../services/google/PubSubService'; +import { publishMessageWithRetryToPubSub } from '../../services/google/PubSubWithRetryService'; const logCategory = 'Data Access Request'; const bpmController = require('../bpmnworkflow/bpmnworkflow.controller'); @@ -472,7 +472,7 @@ export default class DataRequestController extends Controller { data: accessRecord.questionAnswers, } }; - await publishMessageToPubSub(process.env.PUBSUB_TOPIC_ENQUIRY, JSON.stringify(pubSubMessage)); + await publishMessageWithRetryToPubSub(process.env.PUBSUB_TOPIC_ENQUIRY, JSON.stringify(pubSubMessage)); } } diff --git a/src/resources/message/message.controller.js b/src/resources/message/message.controller.js index df8d0566..557c787d 100644 --- a/src/resources/message/message.controller.js +++ b/src/resources/message/message.controller.js @@ -9,7 +9,6 @@ import { Data as ToolModel } from '../tool/data.model'; import constants from '../utilities/constants.util'; import { dataRequestService } from '../datarequest/dependency'; import { activityLogService } from '../activitylog/dependency'; -import { publishMessageToPubSub } from '../../services/google/PubSubService'; import { publishMessageWithRetryToPubSub } from '../../services/google/PubSubWithRetryService'; import { PublisherModel } from '../publisher/publisher.model'; @@ -208,7 +207,6 @@ module.exports = { } }; - // await publishMessageToPubSub(process.env.PUBSUB_TOPIC_ENQUIRY, JSON.stringify(pubSubMessage)); await publishMessageWithRetryToPubSub(process.env.PUBSUB_TOPIC_ENQUIRY, JSON.stringify(pubSubMessage)); } } From f02c56f1296e8d61b2c0f51da1ccbd977f28e626 Mon Sep 17 00:00:00 2001 From: Dan Nita Date: Mon, 13 Jun 2022 10:09:25 +0100 Subject: [PATCH 41/67] small update --- src/resources/datarequest/datarequest.controller.js | 2 +- src/resources/message/message.controller.js | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/src/resources/datarequest/datarequest.controller.js b/src/resources/datarequest/datarequest.controller.js index 7b523560..010ed4c4 100644 --- a/src/resources/datarequest/datarequest.controller.js +++ b/src/resources/datarequest/datarequest.controller.js @@ -452,7 +452,7 @@ export default class DataRequestController extends Controller { bpmController.postStartPreReview(bpmContext); } - // publish the message to Redis PubSub + // publish the message to GCP PubSub const cacheEnabled = process.env.CACHE_ENABLED || false; if(cacheEnabled) { let publisherDetails = await PublisherModel.findOne({ _id: ObjectId(accessRecord.publisherObj._id) }).lean(); diff --git a/src/resources/message/message.controller.js b/src/resources/message/message.controller.js index 557c787d..3252dba5 100644 --- a/src/resources/message/message.controller.js +++ b/src/resources/message/message.controller.js @@ -186,7 +186,7 @@ module.exports = { ); } - // publish the message to Redis PubSub + // publish the message to GCP PubSub const cacheEnabled = process.env.CACHE_ENABLED || false; if(cacheEnabled) { let publisherDetails = await PublisherModel.findOne({ _id: ObjectId(tools[0].publisher._id) }).lean(); From 148ab2ed401a4c71519cd3a746ac4c8b51b04254 Mon Sep 17 00:00:00 2001 From: kandaj Date: Wed, 15 Jun 2022 13:35:38 +0100 Subject: [PATCH 42/67] email template update --- .../utilities/emailGenerator.util.js | 110 +++++++++--------- 1 file changed, 56 insertions(+), 54 deletions(-) diff --git a/src/resources/utilities/emailGenerator.util.js b/src/resources/utilities/emailGenerator.util.js index ecc44db9..2b89a481 100644 --- a/src/resources/utilities/emailGenerator.util.js +++ b/src/resources/utilities/emailGenerator.util.js @@ -16,16 +16,16 @@ let questionList = []; let excludedQuestionSetIds = ['addRepeatableSection', 'removeRepeatableSection']; let autoCompleteLookups = { fullname: ['email'] }; let transporterOptions = { - host: process.env.MAIL_HOST, - port: process.env.MAIL_PORT, - auth: { - user: process.env.MAIL_USERNAME, - pass: process.env.MAIL_PASSWORD, - }, - pool: true, - maxConnections: 1, - rateDelta: 20000, - rateLimit: 5, + host: process.env.MAIL_HOST, + port: process.env.MAIL_PORT, + auth: { + user: process.env.MAIL_USERNAME, + pass: process.env.MAIL_PASSWORD, + }, + pool: true, + maxConnections: 1, + rateDelta: 20000, + rateLimit: 5, }; let transporter = nodemailer.createTransport(transporterOptions); @@ -667,6 +667,7 @@ const _displayDataUseRegisterDashboardLink = () => { const _generateDARStatusChangedEmail = options => { let { id, applicationStatus, applicationStatusDesc, projectId, projectName, publisher, datasetTitles, dateSubmitted, applicants } = options; + console.log(applicationStatus); let body = `
{ @@ -2263,9 +2264,9 @@ const _generateMessageNotification = options => { }; const _generateMessageCreatorNotification = options => { - let { firstMessage, firstname, lastname, messageDescription, openMessagesLink } = options; + let { firstMessage, firstname, lastname, messageDescription, openMessagesLink } = options; - let body = `
+ let body = `
- Your data access request for ${projectName || datasetTitles} has been approved with conditions by ${publisher}. + Your data access request for ${projectName || datasetTitles} has been ${applicationStatus} by ${publisher}. Summary information about your approved project will be included in the Gateway data use register. You will be notified as soon as this becomes visible and searchable on the Gateway.
{ @@ -2295,7 +2298,7 @@ const _generateMessageCreatorNotification = options => {

Dear ${firstname} ${lastname},

Thank you for submitting an enquiry about ${firstMessage.datasetsRequested[0].name}.

-

Your enquiry has been sent to ${firstMessage.datasetsRequested[0].publisher} who will reply in due course. If you have not received a response after 10 working days, or if you have any queries or concerns about the Gateway, please email enquiries@hdruk.ac.uk and a member of the HDR UK team will get in touch with you.

+

Your enquiry has been sent to ${ + firstMessage.datasetsRequested[0].publisher + } who will reply in due course. If you have not received a response after 10 working days, or if you have any queries or concerns about the Gateway, please email enquiries@hdruk.ac.uk and a member of the HDR UK team will get in touch with you.

${messageDescription.replace(/\n/g, '
')}
`; - return body; + return body; }; const _generateEntityNotification = options => { @@ -2554,7 +2557,7 @@ ${_displayDataUseRegisterDashboardLink()} * @param {Object} context */ const _sendEmail = async (to, from, subject, html, allowUnsubscribe = true, attachments = []) => { - const recipients = [...new Map(to.map(item => [item['email'], item])).values()]; + const recipients = [...new Map(to.map(item => [item['email'], item])).values()]; // 3. Build each email object for SendGrid extracting email addresses from user object with unique unsubscribe link (to) for (let recipient of recipients) { let body = _generateEmailHeader + html + _generateEmailFooter(recipient, allowUnsubscribe); @@ -2566,45 +2569,44 @@ const _sendEmail = async (to, from, subject, html, allowUnsubscribe = true, atta attachments, }; - // 4. Send email - try { - await transporter.sendMail(message, (error, info) => { - if (error) { - return console.log(error); - } - console.log('Email sent: ' + info.response); - }); - } catch (error) { - console.error(error.response.body); - Sentry.addBreadcrumb({ - category: 'SendGrid', - message: 'Sending email failed', - level: Sentry.Severity.Warning, - }); - Sentry.captureException(error); - } - + // 4. Send email + try { + await transporter.sendMail(message, (error, info) => { + if (error) { + return console.log(error); + } + console.log('Email sent: ' + info.response); + }); + } catch (error) { + console.error(error.response.body); + Sentry.addBreadcrumb({ + category: 'SendGrid', + message: 'Sending email failed', + level: Sentry.Severity.Warning, + }); + Sentry.captureException(error); + } } }; -const _sendEmailSmtp = async (message) => { - try { - await transporter.sendMail(message, (error, info) => { - if (error) { - return console.log(error); - } - console.log('Email sent: ' + info.response); - }); - } catch (error) { - console.error(error.response.body); - Sentry.addBreadcrumb({ - category: 'SendGrid', - message: 'Sending email failed', - level: Sentry.Severity.Warning, - }); - Sentry.captureException(error); - } -} +const _sendEmailSmtp = async message => { + try { + await transporter.sendMail(message, (error, info) => { + if (error) { + return console.log(error); + } + console.log('Email sent: ' + info.response); + }); + } catch (error) { + console.error(error.response.body); + Sentry.addBreadcrumb({ + category: 'SendGrid', + message: 'Sending email failed', + level: Sentry.Severity.Warning, + }); + Sentry.captureException(error); + } +}; /** * [_sendIntroEmail] @@ -2613,7 +2615,7 @@ const _sendEmailSmtp = async (message) => { * @param {Object} message to from, templateId */ const _sendIntroEmail = msg => { - _sendEmailSmtp(msg); + _sendEmailSmtp(msg); }; const _generateEmailHeader = ` @@ -2736,7 +2738,7 @@ export default { //generateMetadataOnboardingUnArchived: _generateMetadataOnboardingUnArchived, //Messages generateMessageNotification: _generateMessageNotification, - generateMessageCreatorNotification: _generateMessageCreatorNotification, + generateMessageCreatorNotification: _generateMessageCreatorNotification, generateEntityNotification: _generateEntityNotification, //ActivityLog generateActivityLogManualEventCreated: _generateActivityLogManualEventCreated, From f707665ae9f0340fc6fbdb992111e5fe4b1c3020 Mon Sep 17 00:00:00 2001 From: Callum Reekie Date: Wed, 15 Jun 2022 14:18:58 +0100 Subject: [PATCH 43/67] updated search filter behaviour for datasets --- src/config/server.js | 2 +- .../dataUseRegister.controller.js | 4 +- src/resources/search/search.repository.js | 6 +- src/resources/search/search.router.js | 47 ++++---- .../search/searchFilter.controller.js | 102 ++++++++++++++++++ ...{filter.route.js => searchFilter.route.js} | 79 ++++++-------- src/resources/utilities/constants.util.js | 12 +++ 7 files changed, 178 insertions(+), 74 deletions(-) create mode 100644 src/resources/search/searchFilter.controller.js rename src/resources/search/{filter.route.js => searchFilter.route.js} (62%) diff --git a/src/config/server.js b/src/config/server.js index 8711cc88..6318c634 100644 --- a/src/config/server.js +++ b/src/config/server.js @@ -198,7 +198,7 @@ app.use('/api/v1/reviews', require('../resources/tool/review.route')); app.use('/api/v1/relatedobject/', require('../resources/relatedobjects/relatedobjects.route')); app.use('/api/v1/accounts', require('../resources/account/account.route')); -app.use('/api/v1/search/filter', require('../resources/search/filter.route')); +app.use('/api/v1/search/filter', require('../resources/search/searchFilter.route')); app.use('/api/v1/search', require('../resources/search/search.router')); // tools projects people app.use('/api/v1/linkchecker', require('../resources/linkchecker/linkchecker.router')); diff --git a/src/resources/dataUseRegister/dataUseRegister.controller.js b/src/resources/dataUseRegister/dataUseRegister.controller.js index 87c52a6e..03903dfe 100644 --- a/src/resources/dataUseRegister/dataUseRegister.controller.js +++ b/src/resources/dataUseRegister/dataUseRegister.controller.js @@ -267,7 +267,7 @@ export default class DataUseRegisterController extends Controller { } let searchQuery = { $and: [{ activeflag: 'active' }] }; - searchQuery = getObjectFilters(searchQuery, req, 'dataUseRegister'); + searchQuery = getObjectFilters(searchQuery, req.query, 'dataUseRegister'); const aggregateQuery = [ { @@ -380,7 +380,7 @@ export default class DataUseRegisterController extends Controller { const team = await TeamModel.findById(dataUseRegister.publisher.toString()); if (team.notifications.length > 0 && team.notifications[0].optIn) { team.notifications[0].subscribedEmails.map(teamEmail => { - teamEmailNotification.push({email: teamEmail}); + teamEmailNotification.push({ email: teamEmail }); }); } const dataUseTeamMembers = teamController.getTeamMembersByRole(adminTeam, constants.roleTypes.ADMIN_DATA_USE); diff --git a/src/resources/search/search.repository.js b/src/resources/search/search.repository.js index 65b688d8..99a00ba1 100644 --- a/src/resources/search/search.repository.js +++ b/src/resources/search/search.repository.js @@ -860,13 +860,13 @@ export function getMyObjectsCount(type, searchAll, searchQuery, authorID) { }); } -export function getObjectFilters(searchQueryStart, req, type) { +export function getObjectFilters(searchQueryStart, queryParams, type) { let searchQuery = JSON.parse(JSON.stringify(searchQueryStart)); // iterate over query string keys - for (const key of Object.keys(req.query)) { + for (const key of Object.keys(queryParams)) { try { - const filterValues = req.query[key].split('::'); + const filterValues = queryParams[key].split('::'); // check mapper for query type // let filterNode = findNodeInTree(`${type}Filters`, key); let filterNode; diff --git a/src/resources/search/search.router.js b/src/resources/search/search.router.js index 82bca413..cc58bd47 100644 --- a/src/resources/search/search.router.js +++ b/src/resources/search/search.router.js @@ -29,7 +29,14 @@ router.get('/', async (req, res) => { let searchAll = false; if (searchString.length > 0) { - searchQuery['$and'].push({ $text: { $search: `'${searchString.split(" ").map(item => item.replace(/^/,"\"").replace(/$/,"\"")).join(" ")}'` }}); + searchQuery['$and'].push({ + $text: { + $search: `'${searchString + .split(' ') + .map(item => item.replace(/^/, '"').replace(/$/, '"')) + .join(' ')}'`, + }, + }); } else { searchAll = true; } @@ -62,7 +69,7 @@ router.get('/', async (req, res) => { getObjectResult( 'dataset', searchAll, - getObjectFilters(searchQuery, req, 'dataset'), + getObjectFilters(searchQuery, req.query, 'dataset'), req.query.datasetIndex || 0, req.query.maxResults || 40, req.query.datasetSort || '' @@ -70,7 +77,7 @@ router.get('/', async (req, res) => { getObjectResult( 'tool', searchAll, - getObjectFilters(searchQuery, req, 'tool'), + getObjectFilters(searchQuery, req.query, 'tool'), req.query.toolIndex || 0, req.query.maxResults || 40, req.query.toolSort || '', @@ -80,7 +87,7 @@ router.get('/', async (req, res) => { getObjectResult( 'project', searchAll, - getObjectFilters(searchQuery, req, 'project'), + getObjectFilters(searchQuery, req.query, 'project'), req.query.projectIndex || 0, req.query.maxResults || 40, req.query.projectSort || '', @@ -90,7 +97,7 @@ router.get('/', async (req, res) => { getObjectResult( 'paper', searchAll, - getObjectFilters(searchQuery, req, 'paper'), + getObjectFilters(searchQuery, req.query, 'paper'), req.query.paperIndex || 0, req.query.maxResults || 40, req.query.paperSort || '', @@ -101,7 +108,7 @@ router.get('/', async (req, res) => { getObjectResult( 'course', searchAll, - getObjectFilters(searchQuery, req, 'course'), + getObjectFilters(searchQuery, req.query, 'course'), req.query.courseIndex || 0, req.query.maxResults || 40, 'startdate', @@ -111,7 +118,7 @@ router.get('/', async (req, res) => { getObjectResult( 'collection', searchAll, - getObjectFilters(searchQuery, req, 'collection'), + getObjectFilters(searchQuery, req.query, 'collection'), req.query.collectionIndex || 0, req.query.maxResults || 40, req.query.collectionSort || '' @@ -119,7 +126,7 @@ router.get('/', async (req, res) => { getObjectResult( 'dataUseRegister', searchAll, - getObjectFilters(searchQuery, req, 'dataUseRegister'), + getObjectFilters(searchQuery, req.query, 'dataUseRegister'), req.query.dataUseRegisterIndex || 0, req.query.maxResults || 40, req.query.dataUseRegisterSort || '' @@ -130,7 +137,7 @@ router.get('/', async (req, res) => { results = await getObjectResult( entityType, searchAll, - getObjectFilters(searchQuery, req, entityType), + getObjectFilters(searchQuery, req.query, entityType), req.query[`${entityType}Index`] || 0, req.query.maxResults || 40, sort @@ -138,14 +145,14 @@ router.get('/', async (req, res) => { } const summaryCounts = await Promise.all([ - getObjectCount('dataset', searchAll, getObjectFilters(searchQuery, req, 'dataset')), - getObjectCount('tool', searchAll, getObjectFilters(searchQuery, req, 'tool')), - getObjectCount('project', searchAll, getObjectFilters(searchQuery, req, 'project')), - getObjectCount('paper', searchAll, getObjectFilters(searchQuery, req, 'paper')), + getObjectCount('dataset', searchAll, getObjectFilters(searchQuery, req.query, 'dataset')), + getObjectCount('tool', searchAll, getObjectFilters(searchQuery, req.query, 'tool')), + getObjectCount('project', searchAll, getObjectFilters(searchQuery, req.query, 'project')), + getObjectCount('paper', searchAll, getObjectFilters(searchQuery, req.query, 'paper')), getObjectCount('person', searchAll, searchQuery), - getObjectCount('course', searchAll, getObjectFilters(searchQuery, req, 'course')), - getObjectCount('collection', searchAll, getObjectFilters(searchQuery, req, 'collection')), - getObjectCount('dataUseRegister', searchAll, getObjectFilters(searchQuery, req, 'dataUseRegister')), + getObjectCount('course', searchAll, getObjectFilters(searchQuery, req.query, 'course')), + getObjectCount('collection', searchAll, getObjectFilters(searchQuery, req.query, 'collection')), + getObjectCount('dataUseRegister', searchAll, getObjectFilters(searchQuery, req.query, 'dataUseRegister')), ]); const summary = { @@ -162,10 +169,10 @@ router.get('/', async (req, res) => { let myEntitiesSummary = {}; if (req.query.form === 'true') { const summaryMyEntityCounts = await Promise.all([ - getMyObjectsCount('tool', searchAll, getObjectFilters(searchQuery, req, 'tool'), authorID), - getMyObjectsCount('project', searchAll, getObjectFilters(searchQuery, req, 'project'), authorID), - getMyObjectsCount('paper', searchAll, getObjectFilters(searchQuery, req, 'paper'), authorID), - getMyObjectsCount('course', searchAll, getObjectFilters(searchQuery, req, 'course'), authorID), + getMyObjectsCount('tool', searchAll, getObjectFilters(searchQuery, req.query, 'tool'), authorID), + getMyObjectsCount('project', searchAll, getObjectFilters(searchQuery, req.query, 'project'), authorID), + getMyObjectsCount('paper', searchAll, getObjectFilters(searchQuery, req.query, 'paper'), authorID), + getMyObjectsCount('course', searchAll, getObjectFilters(searchQuery, req.query, 'course'), authorID), ]); myEntitiesSummary = { diff --git a/src/resources/search/searchFilter.controller.js b/src/resources/search/searchFilter.controller.js new file mode 100644 index 00000000..9105bd8e --- /dev/null +++ b/src/resources/search/searchFilter.controller.js @@ -0,0 +1,102 @@ +import { isEqual, isEmpty, cloneDeep } from 'lodash'; + +import searchUtil from './util/search.util'; +import { getObjectFilters } from './search.repository'; +import constantsUtil from '../utilities/constants.util'; +import { + datasetFilters, + toolFilters, + projectFilters, + paperFilters, + collectionFilters, + courseFilters, + dataUseRegisterFilters, +} from '../filters/filters.mapper'; +import { findNodeInTree } from '../filters/utils/filters.util'; + +export default class SearchFilterController { + constructor(filtersService) { + this.filtersService = filtersService; + } + + /** Get the relevant filters for a given query */ + getSearchFilters = async (req, res) => { + const query = req.query.search || ''; + const tab = req.query.tab || ''; + + const dataType = !isEmpty(tab) && typeof tab === 'string' ? constantsUtil.searchDataTypes[tab] : ''; + + let baseQuery = { $and: [{ activeflag: 'active' }] }; + + if (dataType === 'collection') { + baseQuery['$and'].push({ publicflag: true }); + } + + if (dataType === 'course') { + baseQuery['$and'].push({ + $or: [{ 'courseOptions.startDate': { $gte: new Date(Date.now()) } }, { 'courseOptions.flexibleDates': true }], + }); + } + + if (query.length > 0) { + baseQuery['$and'].push({ $text: { $search: query } }); + } + + try { + const filterQuery = getObjectFilters(baseQuery, req.query, dataType); + const useCache = isEqual(baseQuery, filterQuery) && query.length === 0; + + let filters = await this.filtersService.buildFilters(dataType, filterQuery, useCache); + + if (dataType === 'dataset') { + // enable new filter behaviour for datasets only - if statement can be removed to apply to all + filters = await this._modifySelectedFilters(req.query, filters, baseQuery, dataType); + } + + filters['spatialv2'] = searchUtil.arrayToTree(filters['spatial'] || []); + + return res.status(200).json({ + success: true, + filters, + }); + } catch (err) { + process.stdout.write(`${err.message}\n`); + return res.json({ + success: false, + message: err.message, + }); + } + }; + + /** Update options for selected filters by removing themselves from the query. */ + _modifySelectedFilters = async (selected, filters, baseQuery, dataType) => { + const mapperOptions = { + dataset: datasetFilters, + tool: toolFilters, + project: projectFilters, + paper: paperFilters, + collection: collectionFilters, + course: courseFilters, + dataUseRegister: dataUseRegisterFilters, + }; + + await Promise.all( + Object.keys(selected).map(async filter => { + const { key } = (await findNodeInTree(mapperOptions[dataType], filter)) || ''; + + if (key) { + let queryParams = cloneDeep(selected); + + delete queryParams[filter]; + + const filterQuery = await getObjectFilters(baseQuery, queryParams, dataType); + const updatedFilters = await this.filtersService.buildFilters(dataType, filterQuery, false); + + filters[key] = updatedFilters[key]; + } + }) + ); + + return filters; + }; +} diff --git a/src/resources/search/filter.route.js b/src/resources/search/searchFilter.route.js similarity index 62% rename from src/resources/search/filter.route.js rename to src/resources/search/searchFilter.route.js index ec526a9b..ff9946f7 100644 --- a/src/resources/search/filter.route.js +++ b/src/resources/search/searchFilter.route.js @@ -1,58 +1,29 @@ import express from 'express'; + import { getObjectFilters, getFilter } from './search.repository'; +import SearchFilterController from './searchFilter.controller'; import { filtersService } from '../filters/dependency'; -import { isEqual, isEmpty } from 'lodash'; -import searchUtil from './util/search.util'; const router = express.Router(); -const typeMapper = { - Datasets: 'dataset', - Tools: 'tool', - Projects: 'project', - Papers: 'paper', - People: 'person', - Courses: 'course', - Collections: 'collection', - Datauses: 'dataUseRegister', -}; +const searchFilterController = new SearchFilterController(filtersService); // @route GET api/v1/search/filter // @desc GET Get filters // @access Public -router.get('/', async (req, res) => { - let searchString = req.query.search || ''; //If blank then return all - let tab = req.query.tab || ''; //If blank then return all - - const type = !isEmpty(tab) && typeof tab === 'string' ? typeMapper[`${tab}`] : ''; - - let defaultQuery = { $and: [{ activeflag: 'active' }] }; - if (type === 'collection') { - defaultQuery['$and'].push({ publicflag: true }); - } else if (type === 'course') { - defaultQuery['$and'].push({ - $or: [{ 'courseOptions.startDate': { $gte: new Date(Date.now()) } }, { 'courseOptions.flexibleDates': true }], - }); - } - - if (searchString.length > 0) defaultQuery['$and'].push({ $text: { $search: searchString } }); - const filterQuery = getObjectFilters(defaultQuery, req, type); - const useCachedFilters = isEqual(defaultQuery, filterQuery) && searchString.length === 0; - - const filters = await filtersService.buildFilters(type, filterQuery, useCachedFilters); - const spatialV2 = searchUtil.arrayToTree(filters['spatial'] || []); - filters['spatialv2'] = spatialV2; - return res.json({ - success: true, - filters, - }); -}); +router.get('/', searchFilterController.getSearchFilters); // @route GET api/v1/search/filter/topic/:type // @desc GET Get list of topics by entity type // @access Public router.get('/topic/:type', async (req, res) => { - await getFilter('', req.params.type, 'tags.topics', true, getObjectFilters({ $and: [{ activeflag: 'active' }] }, req, req.params.type)) + await getFilter( + '', + req.params.type, + 'tags.topics', + true, + getObjectFilters({ $and: [{ activeflag: 'active' }] }, req.query, req.params.type) + ) .then(data => { return res.json({ success: true, data }); }) @@ -65,7 +36,13 @@ router.get('/topic/:type', async (req, res) => { // @desc GET Get list of features by entity type // @access Public router.get('/feature/:type', async (req, res) => { - await getFilter('', req.params.type, 'tags.features', true, getObjectFilters({ $and: [{ activeflag: 'active' }] }, req, req.params.type)) + await getFilter( + '', + req.params.type, + 'tags.features', + true, + getObjectFilters({ $and: [{ activeflag: 'active' }] }, req.query, req.params.type) + ) .then(data => { return res.json({ success: true, data }); }) @@ -83,7 +60,7 @@ router.get('/language/:type', async (req, res) => { req.params.type, 'programmingLanguage.programmingLanguage', true, - getObjectFilters({ $and: [{ activeflag: 'active' }] }, req, req.params.type) + getObjectFilters({ $and: [{ activeflag: 'active' }] }, req.query, req.params.type) ) .then(data => { return res.json({ success: true, data }); @@ -102,7 +79,7 @@ router.get('/category/:type', async (req, res) => { req.params.type, 'categories.category', false, - getObjectFilters({ $and: [{ activeflag: 'active' }] }, req, req.params.type) + getObjectFilters({ $and: [{ activeflag: 'active' }] }, req.query, req.params.type) ) .then(data => { return res.json({ success: true, data }); @@ -116,7 +93,7 @@ router.get('/category/:type', async (req, res) => { // @desc GET Get list of licenses by entity type // @access Public router.get('/license/:type', async (req, res) => { - await getFilter('', req.params.type, 'license', false, getObjectFilters({ $and: [{ activeflag: 'active' }] }, req, req.params.type)) + await getFilter('', req.params.type, 'license', false, getObjectFilters({ $and: [{ activeflag: 'active' }] }, req.query, req.params.type)) .then(data => { return res.json({ success: true, data }); }) @@ -129,7 +106,13 @@ router.get('/license/:type', async (req, res) => { // @desc GET Get list of organisations by entity type // @access Public router.get('/organisation/:type', async (req, res) => { - await getFilter('', req.params.type, 'organisation', false, getObjectFilters({ $and: [{ activeflag: 'active' }] }, req, req.params.type)) + await getFilter( + '', + req.params.type, + 'organisation', + false, + getObjectFilters({ $and: [{ activeflag: 'active' }] }, req.query, req.params.type) + ) .then(data => { return res.json({ success: true, data }); }) @@ -142,7 +125,7 @@ router.get('/organisation/:type', async (req, res) => { // @desc GET Get list of features by entity type // @access Public router.get('/domains/:type', async (req, res) => { - await getFilter('', req.params.type, 'domains', true, getObjectFilters({ $and: [{ activeflag: 'active' }] }, req, req.params.type)) + await getFilter('', req.params.type, 'domains', true, getObjectFilters({ $and: [{ activeflag: 'active' }] }, req.query, req.params.type)) .then(data => { return res.json({ success: true, data }); }) @@ -155,7 +138,7 @@ router.get('/domains/:type', async (req, res) => { // @desc GET Get list of features by entity type // @access Public router.get('/keywords/:type', async (req, res) => { - await getFilter('', req.params.type, 'keywords', true, getObjectFilters({ $and: [{ activeflag: 'active' }] }, req, req.params.type)) + await getFilter('', req.params.type, 'keywords', true, getObjectFilters({ $and: [{ activeflag: 'active' }] }, req.query, req.params.type)) .then(data => { return res.json({ success: true, data }); }) @@ -168,7 +151,7 @@ router.get('/keywords/:type', async (req, res) => { // @desc GET Get list of features by entity type // @access Public router.get('/awards/:type', async (req, res) => { - await getFilter('', req.params.type, 'award', true, getObjectFilters({ $and: [{ activeflag: 'active' }] }, req, req.params.type)) + await getFilter('', req.params.type, 'award', true, getObjectFilters({ $and: [{ activeflag: 'active' }] }, req.query, req.params.type)) .then(data => { return res.json({ success: true, data }); }) diff --git a/src/resources/utilities/constants.util.js b/src/resources/utilities/constants.util.js index 0b775d52..956ac338 100644 --- a/src/resources/utilities/constants.util.js +++ b/src/resources/utilities/constants.util.js @@ -334,6 +334,17 @@ const _datasetSortDirections = { desc: -1, }; +const _searchDataTypes = { + Datasets: 'dataset', + Tools: 'tool', + Projects: 'project', + Papers: 'paper', + People: 'person', + Courses: 'course', + Collections: 'collection', + Datauses: 'dataUseRegister', +}; + export default { userTypes: _userTypes, enquiryFormId: _enquiryFormId, @@ -368,4 +379,5 @@ export default { datasetSortDirections: _datasetSortDirections, dataUseRegisterStatus: _dataUseRegisterStatus, dataUseRegisterNotifications: _dataUseRegisterNotifications, + searchDataTypes: _searchDataTypes, }; From 89d0e88affd649e3624e2b5cb0409d20de303fdf Mon Sep 17 00:00:00 2001 From: Callum Reekie Date: Wed, 15 Jun 2022 15:23:35 +0100 Subject: [PATCH 44/67] tests for updated search filter behaviour --- .../__tests__/searchFilter.controller.test.js | 103 ++++++++++++++++++ .../search/searchFilter.controller.js | 2 +- 2 files changed, 104 insertions(+), 1 deletion(-) create mode 100644 src/resources/search/__tests__/searchFilter.controller.test.js diff --git a/src/resources/search/__tests__/searchFilter.controller.test.js b/src/resources/search/__tests__/searchFilter.controller.test.js new file mode 100644 index 00000000..39968c70 --- /dev/null +++ b/src/resources/search/__tests__/searchFilter.controller.test.js @@ -0,0 +1,103 @@ +import sinon from 'sinon'; + +import { filtersService } from '../../filters/dependency'; +import SearchFilterController from '../searchFilter.controller'; + +afterEach(function () { + sinon.restore(); +}); + +describe('searchFilterController', () => { + const mockedRequest = () => { + const req = { + query: {}, + }; + return req; + }; + + const mockedResponse = () => { + const res = {}; + res.status = jest.fn().mockReturnValue(res); + res.json = jest.fn().mockReturnValue(res); + return res; + }; + + const searchFilterController = new SearchFilterController(filtersService); + + describe('getSearchFilters', () => { + it('should return a base list of filters if no filter selected', async () => { + const filterServiceStub = sinon.stub(filtersService, 'buildFilters').resolves({ publisher: ['SAIL', 'PUBLIC HEALTH SCOTLAND'] }); + 3; + let req = mockedRequest(); + let res = mockedResponse(); + + req.query.tab = 'Datasets'; + req.query.search = ''; + + const expectedResponse = { + success: true, + filters: { + publisher: ['SAIL', 'PUBLIC HEALTH SCOTLAND'], + spatialv2: [], + }, + }; + + await searchFilterController.getSearchFilters(req, res); + + expect(res.status).toHaveBeenCalledWith(200); + expect(res.json).toHaveBeenCalledWith(expectedResponse); + expect(filterServiceStub.calledOnce).toBe(true); + }); + + it('should return a modified list of filters if a given filter group is selected', async () => { + // For example, submitting a request with "datasetpublisher" filter selected + const filterServiceStub = sinon.stub(filtersService, 'buildFilters'); + filterServiceStub.onFirstCall().resolves({ publisher: ['SAIL', 'PUBLIC HEALTH SCOTLAND'] }); + filterServiceStub.onSecondCall().resolves({ publisher: ['SAIL', 'PUBLIC HEALTH SCOTLAND', 'BARTS'] }); + + let req = mockedRequest(); + let res = mockedResponse(); + + req.query.tab = 'Datasets'; + req.query.search = ''; + req.query.datasetpublisher = ''; + + const expectedResponse = { + success: true, + filters: { + publisher: ['SAIL', 'PUBLIC HEALTH SCOTLAND', 'BARTS'], + spatialv2: [], + }, + }; + + await searchFilterController.getSearchFilters(req, res); + + expect(res.status).toHaveBeenCalledWith(200); + expect(res.json).toHaveBeenCalledWith(expectedResponse); + expect(filterServiceStub.calledTwice).toBe(true); + }); + + it('should return 500 if an exception is thrown', async () => { + // For example, submitting a request with "datasetpublisher" filter selected + const err = 'TEST MESSAGE: error thrown'; + const filterServiceStub = sinon.stub(filtersService, 'buildFilters').rejects(new Error(err)); + + let req = mockedRequest(); + let res = mockedResponse(); + + req.query.tab = 'Datasets'; + req.query.search = ''; + + const expectedResponse = { + success: false, + message: err, + }; + + await searchFilterController.getSearchFilters(req, res); + + expect(res.status).toHaveBeenCalledWith(500); + expect(res.json).toHaveBeenCalledWith(expectedResponse); + expect(filterServiceStub.calledOnce).toBe(true); + }); + }); +}); diff --git a/src/resources/search/searchFilter.controller.js b/src/resources/search/searchFilter.controller.js index 9105bd8e..4dc8564c 100644 --- a/src/resources/search/searchFilter.controller.js +++ b/src/resources/search/searchFilter.controller.js @@ -61,7 +61,7 @@ export default class SearchFilterController { }); } catch (err) { process.stdout.write(`${err.message}\n`); - return res.json({ + return res.status(500).json({ success: false, message: err.message, }); From a4b1802edbb75a835703d78b5bb9aa2775a5c712 Mon Sep 17 00:00:00 2001 From: kandaj Date: Wed, 15 Jun 2022 15:26:03 +0100 Subject: [PATCH 45/67] console.log removed --- src/resources/utilities/emailGenerator.util.js | 1 - 1 file changed, 1 deletion(-) diff --git a/src/resources/utilities/emailGenerator.util.js b/src/resources/utilities/emailGenerator.util.js index 2b89a481..14fdf155 100644 --- a/src/resources/utilities/emailGenerator.util.js +++ b/src/resources/utilities/emailGenerator.util.js @@ -667,7 +667,6 @@ const _displayDataUseRegisterDashboardLink = () => { const _generateDARStatusChangedEmail = options => { let { id, applicationStatus, applicationStatusDesc, projectId, projectName, publisher, datasetTitles, dateSubmitted, applicants } = options; - console.log(applicationStatus); let body = `
Date: Wed, 15 Jun 2022 15:43:16 +0100 Subject: [PATCH 46/67] add filterService private variable --- src/resources/search/searchFilter.controller.js | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/src/resources/search/searchFilter.controller.js b/src/resources/search/searchFilter.controller.js index 4dc8564c..3f36c0b3 100644 --- a/src/resources/search/searchFilter.controller.js +++ b/src/resources/search/searchFilter.controller.js @@ -15,8 +15,10 @@ import { import { findNodeInTree } from '../filters/utils/filters.util'; export default class SearchFilterController { + _filtersService; + constructor(filtersService) { - this.filtersService = filtersService; + this._filtersService = filtersService; } /** Get the relevant filters for a given query */ @@ -46,7 +48,7 @@ export default class SearchFilterController { const filterQuery = getObjectFilters(baseQuery, req.query, dataType); const useCache = isEqual(baseQuery, filterQuery) && query.length === 0; - let filters = await this.filtersService.buildFilters(dataType, filterQuery, useCache); + let filters = await this._filtersService.buildFilters(dataType, filterQuery, useCache); if (dataType === 'dataset') { // enable new filter behaviour for datasets only - if statement can be removed to apply to all @@ -90,7 +92,7 @@ export default class SearchFilterController { delete queryParams[filter]; const filterQuery = await getObjectFilters(baseQuery, queryParams, dataType); - const updatedFilters = await this.filtersService.buildFilters(dataType, filterQuery, false); + const updatedFilters = await this._filtersService.buildFilters(dataType, filterQuery, false); filters[key] = updatedFilters[key]; } From 2a37fa96757e4c1e0826452e3a4fb81e17b371b0 Mon Sep 17 00:00:00 2001 From: kandaj Date: Thu, 16 Jun 2022 11:35:13 +0100 Subject: [PATCH 47/67] workflow action email template updates --- src/resources/utilities/emailGenerator.util.js | 10 +++++----- src/resources/workflow/workflow.service.js | 12 +++++++----- 2 files changed, 12 insertions(+), 10 deletions(-) diff --git a/src/resources/utilities/emailGenerator.util.js b/src/resources/utilities/emailGenerator.util.js index 14fdf155..03d9505a 100644 --- a/src/resources/utilities/emailGenerator.util.js +++ b/src/resources/utilities/emailGenerator.util.js @@ -1232,8 +1232,8 @@ const _generateNewReviewPhaseEmail = options => { return body; }; -const _generateWorkflowCreated = options => { - let { workflowName, steps, createdAt, actioner } = options; +const _generateWorkflowActionEmail = options => { + let { workflowName, steps, createdAt, actioner, action } = options; let table = `
{ @@ -2726,7 +2726,7 @@ export default { generateWordContent: _generateWordContent, //Workflows generateWorkflowAssigned: _generateWorkflowAssigned, - generateWorkflowCreated: _generateWorkflowCreated, + generateWorkflowActionEmail: _generateWorkflowActionEmail, //Metadata Onboarding generateMetadataOnboardingSumbitted: _generateMetadataOnboardingSumbitted, generateMetadataOnboardingApproved: _generateMetadataOnboardingApproved, diff --git a/src/resources/workflow/workflow.service.js b/src/resources/workflow/workflow.service.js index c0b4a6ef..87b7c34d 100644 --- a/src/resources/workflow/workflow.service.js +++ b/src/resources/workflow/workflow.service.js @@ -165,17 +165,19 @@ export default class WorkflowService { custodianManagers = teamController.getTeamMembersByRole(publisherObj, 'All'); if (publisherObj.notifications[0].optIn) { publisherObj.notifications[0].subscribedEmails.map(teamEmail => { - custodianManagers.push({email: teamEmail}); + custodianManagers.push({ email: teamEmail }); }); } managerUserIds = custodianManagers.map(user => user.id); let { workflowName = 'Workflow Title', _id, steps, createdAt } = workflow; + const action = type.replace('Workflow', '').toLowerCase(); options = { actioner, workflowName, _id, steps, createdAt, + action, }; // switch over types @@ -190,7 +192,7 @@ export default class WorkflowService { _id ); // 5. Generate the email - html = await emailGenerator.generateWorkflowCreated(options); + html = await emailGenerator.generateWorkflowActionEmail(options); // 6. Send email to custodian managers only within the team await emailGenerator.sendEmail(custodianManagers, constants.hdrukEmail, `A Workflow has been created`, html, false); break; @@ -205,7 +207,7 @@ export default class WorkflowService { _id ); // 5. Generate the email - html = await emailGenerator.generateWorkflowCreated(options); + html = await emailGenerator.generateWorkflowActionEmail(options); // 6. Send email to custodian managers only within the team await emailGenerator.sendEmail(custodianManagers, constants.hdrukEmail, `A Workflow has been updated`, html, false); break; @@ -220,11 +222,11 @@ export default class WorkflowService { _id ); // 5. Generate the email - html = await emailGenerator.generateWorkflowCreated(options); + html = await emailGenerator.generateWorkflowActionEmail(options); // 6. Send email to custodian managers only within the team await emailGenerator.sendEmail(custodianManagers, constants.hdrukEmail, `A Workflow has been deleted`, html, false); break; - } + } } } From 95c5ac8e67447f516c3c64afa2c955f3c2820746 Mon Sep 17 00:00:00 2001 From: kandaj Date: Thu, 16 Jun 2022 11:44:46 +0100 Subject: [PATCH 48/67] template text updated --- src/resources/utilities/emailGenerator.util.js | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/src/resources/utilities/emailGenerator.util.js b/src/resources/utilities/emailGenerator.util.js index 14fdf155..02e9614a 100644 --- a/src/resources/utilities/emailGenerator.util.js +++ b/src/resources/utilities/emailGenerator.util.js @@ -684,8 +684,7 @@ const _generateDARStatusChangedEmail = options => { From 1ffd0bf81e2343d3747e83f1619e31575c34f4c6 Mon Sep 17 00:00:00 2001 From: kandaj Date: Fri, 17 Jun 2022 09:29:59 +0100 Subject: [PATCH 49/67] workflow email template updates --- src/resources/utilities/emailGenerator.util.js | 9 ++++++--- src/resources/workflow/workflow.service.js | 4 ++-- 2 files changed, 8 insertions(+), 5 deletions(-) diff --git a/src/resources/utilities/emailGenerator.util.js b/src/resources/utilities/emailGenerator.util.js index 03d9505a..7f782a85 100644 --- a/src/resources/utilities/emailGenerator.util.js +++ b/src/resources/utilities/emailGenerator.util.js @@ -1233,7 +1233,8 @@ const _generateNewReviewPhaseEmail = options => { }; const _generateWorkflowActionEmail = options => { - let { workflowName, steps, createdAt, actioner, action } = options; + let { workflowName, steps, actioner, action } = options; + const currentDate = new Date().toISOString(); let table = `
- A new Workflow has been created. + A new Workflow has been ${action}.
- ${actioner} has created ${workflowName} on ${moment(createdAt).format('D MMM YYYY')} + ${actioner} has ${action} ${workflowName} on ${moment(createdAt).format('D MMM YYYY')}
Your data access request for ${projectName || datasetTitles} has been ${applicationStatus} by ${publisher}. - Summary information about your approved project will be included in the Gateway data use register. - You will be notified as soon as this becomes visible and searchable on the Gateway. + See below for more details or contact the data custodian.
{ diff --git a/src/resources/workflow/workflow.service.js b/src/resources/workflow/workflow.service.js index 87b7c34d..3fc4120c 100644 --- a/src/resources/workflow/workflow.service.js +++ b/src/resources/workflow/workflow.service.js @@ -202,7 +202,7 @@ export default class WorkflowService { // 4. Create notifications for the managers only await notificationBuilder.triggerNotificationMessage( managerUserIds, - `A new workflow of ${workflowName} has been updated`, + `A workflow of ${workflowName} has been updated`, 'workflow', _id ); @@ -217,7 +217,7 @@ export default class WorkflowService { // 4. Create notifications for the managers only await notificationBuilder.triggerNotificationMessage( managerUserIds, - `A new workflow of ${workflowName} has been deleted`, + `A workflow of ${workflowName} has been deleted`, 'workflow', _id ); From bd1a1918e58f889669db652176065bb355ed68ba Mon Sep 17 00:00:00 2001 From: Dan Nita Date: Fri, 17 Jun 2022 13:45:21 +0100 Subject: [PATCH 50/67] bug fix email notification --- .../datarequest/datarequest.controller.js | 70 ++++++++++++------- src/resources/message/message.controller.js | 2 +- src/resources/team/team.controller.js | 4 +- 3 files changed, 46 insertions(+), 30 deletions(-) diff --git a/src/resources/datarequest/datarequest.controller.js b/src/resources/datarequest/datarequest.controller.js index 010ed4c4..0bd20b65 100644 --- a/src/resources/datarequest/datarequest.controller.js +++ b/src/resources/datarequest/datarequest.controller.js @@ -453,7 +453,7 @@ export default class DataRequestController extends Controller { } // publish the message to GCP PubSub - const cacheEnabled = process.env.CACHE_ENABLED || false; + const cacheEnabled = parseInt(process.env.CACHE_ENABLED) || 0; if(cacheEnabled) { let publisherDetails = await PublisherModel.findOne({ _id: ObjectId(accessRecord.publisherObj._id) }).lean(); @@ -2015,12 +2015,15 @@ export default class DataRequestController extends Controller { questionWithAnswer = {}, } = context; + let notificationTeam = []; + switch (type) { case constants.notificationTypes.INPROGRESS: custodianManagers = teamController.getTeamMembersByRole(accessRecord.publisherObj.team, 'All'); custodianManagersIds = custodianManagers.map(user => user.id); - if (accessRecord.publisherObj.team.notifications[0].optIn) { - accessRecord.publisherObj.team.notifications[0].subscribedEmails.map(teamEmail => { + notificationTeam = accessRecord.publisherObj.team.notifications; + if (notificationTeam.length && notificationTeam[0].optIn) { + notificationTeam[0].subscribedEmails.map(teamEmail => { custodianManagers.push({email: teamEmail}); }); } @@ -2067,8 +2070,9 @@ export default class DataRequestController extends Controller { 'data access request', accessRecord._id ); - if (accessRecord.publisherObj.team.notifications[0].optIn) { - accessRecord.publisherObj.team.notifications[0].subscribedEmails.map(teamEmail => { + notificationTeam = accessRecord.publisherObj.team.notifications; + if (notificationTeam.length && notificationTeam[0].optIn) { + notificationTeam[0].subscribedEmails.map(teamEmail => { custodianManagers.push({email: teamEmail}); }); } @@ -2133,8 +2137,9 @@ export default class DataRequestController extends Controller { accessRecord._id, accessRecord.datasets[0].publisher._id.toString() ); - if (accessRecord.datasets[0].publisher.team.notifications[0].optIn) { - accessRecord.datasets[0].publisher.team.notifications[0].subscribedEmails.map(teamEmail => { + notificationTeam = accessRecord.datasets[0].publisher.team.notifications; + if (notificationTeam.length && notificationTeam[0].optIn) { + notificationTeam[0].subscribedEmails.map(teamEmail => { custodianManagers.push({email: teamEmail}); }); } @@ -2150,8 +2155,9 @@ export default class DataRequestController extends Controller { accessRecord._id, accessRecord.datasets[0].publisher._id.toString() ); - if (accessRecord.publisherObj.team.notifications[0].optIn) { - accessRecord.publisherObj.team.notifications[0].subscribedEmails.map(teamEmail => { + notificationTeam = accessRecord.publisherObj.team.notifications; + if (notificationTeam.length && notificationTeam[0].optIn) { + notificationTeam[0].subscribedEmails.map(teamEmail => { custodianManagers.push({email: teamEmail}); }); } @@ -2254,14 +2260,16 @@ export default class DataRequestController extends Controller { 'data access request', accessRecord._id ); - if (accessRecord.datasets[0].publisher.team.notifications[0].optIn) { - accessRecord.datasets[0].publisher.team.notifications[0].subscribedEmails.map(teamEmail => { + notificationTeam = accessRecord.datasets[0].publisher.team.notifications; + if (notificationTeam.length && notificationTeam[0].optIn) { + notificationTeam[0].subscribedEmails.map(teamEmail => { custodianManagers.push({email: teamEmail}); }); } } else if (_.has(accessRecord, 'publisherObj') && accessRecord.publisherObj.allowAccessRequestManagement) { // Retrieve all custodian user Ids to generate notifications custodianManagers = teamController.getTeamMembersByRole(accessRecord.publisherObj.team, 'All'); + custodianUserIds = custodianManagers.map(user => user.id); await notificationBuilder.triggerNotificationMessage( custodianUserIds, @@ -2269,8 +2277,9 @@ export default class DataRequestController extends Controller { 'data access request', accessRecord._id ); - if (accessRecord.publisherObj.team.notifications[0].optIn) { - accessRecord.publisherObj.team.notifications[0].subscribedEmails.map(teamEmail => { + notificationTeam = accessRecord.publisherObj.team.notifications; + if (notificationTeam.length && notificationTeam[0].optIn) { + notificationTeam[0].subscribedEmails.map(teamEmail => { custodianManagers.push({email: teamEmail}); }); } @@ -2484,8 +2493,9 @@ export default class DataRequestController extends Controller { 'data access request', accessRecord._id ); - if (accessRecord.publisherObj.team.notifications[0].optIn) { - accessRecord.publisherObj.team.notifications[0].subscribedEmails.map(teamEmail => { + notificationTeam = accessRecord.publisherObj.team.notifications; + if (notificationTeam.length && notificationTeam[0].optIn) { + notificationTeam[0].subscribedEmails.map(teamEmail => { custodianManagers.push({email: teamEmail}); }); } @@ -2513,8 +2523,9 @@ export default class DataRequestController extends Controller { case constants.notificationTypes.DEADLINEWARNING: custodianManagers = teamController.getTeamMembersByRole(accessRecord.publisherObj.team, 'All'); custodianManagersIds = custodianManagers.map(user => user.id); - if (accessRecord.publisherObj.team.notifications[0].optIn) { - accessRecord.publisherObj.team.notifications[0].subscribedEmails.map(teamEmail => { + notificationTeam = accessRecord.publisherObj.team.notifications; + if (notificationTeam.length && notificationTeam[0].optIn) { + notificationTeam[0].subscribedEmails.map(teamEmail => { custodianManagers.push({email: teamEmail}); }); } @@ -2566,8 +2577,9 @@ export default class DataRequestController extends Controller { 'data access request', accessRecord._id ); - if (accessRecord.publisherObj.team.notifications[0].optIn) { - accessRecord.publisherObj.team.notifications[0].subscribedEmails.map(teamEmail => { + notificationTeam = accessRecord.publisherObj.team.notifications; + if (notificationTeam.length && notificationTeam[0].optIn) { + notificationTeam[0].subscribedEmails.map(teamEmail => { custodianManagers.push({email: teamEmail}); }); } @@ -2621,8 +2633,9 @@ export default class DataRequestController extends Controller { 'data access request', accessRecord._id ); - if (accessRecord.publisherObj.team.notifications[0].optIn) { - accessRecord.publisherObj.team.notifications[0].subscribedEmails.map(teamEmail => { + notificationTeam = accessRecord.publisherObj.team.notifications; + if (notificationTeam.length && notificationTeam[0].optIn) { + notificationTeam[0].subscribedEmails.map(teamEmail => { custodianManagers.push({email: teamEmail}); }); } @@ -2750,8 +2763,9 @@ export default class DataRequestController extends Controller { 'data access request', accessRecord._id ); - if (accessRecord.publisherObj.team.notifications[0].optIn) { - accessRecord.publisherObj.team.notifications[0].subscribedEmails.map(teamEmail => { + notificationTeam = accessRecord.publisherObj.team.notifications; + if (notificationTeam.length && notificationTeam[0].optIn) { + notificationTeam[0].subscribedEmails.map(teamEmail => { custodianManagers.push({email: teamEmail}); }); } @@ -2835,8 +2849,9 @@ export default class DataRequestController extends Controller { const custodianManagers = teamController.getTeamMembersByRole(accessRecord.publisherObj.team, 'All'); const custodianManagersIds = custodianManagers.map(user => user.id); - if (accessRecord.publisherObj.team.notifications[0].optIn) { - accessRecord.publisherObj.team.notifications[0].subscribedEmails.map(teamEmail => { + notificationTeam = accessRecord.publisherObj.team.notifications; + if (notificationTeam.length && notificationTeam[0].optIn) { + notificationTeam[0].subscribedEmails.map(teamEmail => { custodianManagers.push({email: teamEmail}); }); } @@ -2869,8 +2884,9 @@ export default class DataRequestController extends Controller { const custodianManagers = teamController.getTeamMembersByRole(accessRecord.publisherObj.team, 'All'); const custodianManagersIds = custodianManagers.map(user => user.id); - if (accessRecord.publisherObj.team.notifications[0].optIn) { - accessRecord.publisherObj.team.notifications[0].subscribedEmails.map(teamEmail => { + notificationTeam = accessRecord.publisherObj.team.notifications; + if (notificationTeam.length && notificationTeam[0].optIn) { + notificationTeam[0].subscribedEmails.map(teamEmail => { custodianManagers.push({email: teamEmail}); }); } diff --git a/src/resources/message/message.controller.js b/src/resources/message/message.controller.js index 3252dba5..1f4b0187 100644 --- a/src/resources/message/message.controller.js +++ b/src/resources/message/message.controller.js @@ -187,7 +187,7 @@ module.exports = { } // publish the message to GCP PubSub - const cacheEnabled = process.env.CACHE_ENABLED || false; + const cacheEnabled = parseInt(process.env.CACHE_ENABLED) || 0; if(cacheEnabled) { let publisherDetails = await PublisherModel.findOne({ _id: ObjectId(tools[0].publisher._id) }).lean(); diff --git a/src/resources/team/team.controller.js b/src/resources/team/team.controller.js index b046623a..2c4d2444 100644 --- a/src/resources/team/team.controller.js +++ b/src/resources/team/team.controller.js @@ -968,12 +968,12 @@ const getTeamMembersByRole = (team, role) => { let { members = [], users = [] } = team; let userIds = members.filter(mem => { - if (mem.roles.includes(role) || role === 'All') { + if (mem.roles.includes(role) || (role === 'All' && _.has(mem, 'roles'))) { if(!_.has(mem, 'notifications')) { return true; } - if (_.has(mem, 'notifications') && !mem.notifications.length) { + if (_.has(mem, 'notifications') && mem.notifications.length === 0) { return true; } From 79198d0cff9e20fd094c7dfc3e72a24e5beef587 Mon Sep 17 00:00:00 2001 From: Peter Hammans Date: Mon, 20 Jun 2022 11:20:53 +0100 Subject: [PATCH 51/67] Initial commit --- .../schema/datarequest.schemas.model.js | 4 ++ .../questionbank/questionbank.service.js | 37 ++++++++++++++++++- 2 files changed, 40 insertions(+), 1 deletion(-) diff --git a/src/resources/datarequest/schema/datarequest.schemas.model.js b/src/resources/datarequest/schema/datarequest.schemas.model.js index b3a65f01..447bb5f1 100644 --- a/src/resources/datarequest/schema/datarequest.schemas.model.js +++ b/src/resources/datarequest/schema/datarequest.schemas.model.js @@ -36,6 +36,10 @@ const DataRequestSchemas = new Schema( type: Object, default: {}, }, + questionSetStatus: { + type: Object, + default: {}, + }, countOfChanges: { type: Number, default: 0, diff --git a/src/resources/questionbank/questionbank.service.js b/src/resources/questionbank/questionbank.service.js index 01669d99..ec5aa640 100644 --- a/src/resources/questionbank/questionbank.service.js +++ b/src/resources/questionbank/questionbank.service.js @@ -16,14 +16,15 @@ export default class QuestionbankService { let dataRequestSchemas = await this.dataRequestRepository.getApplicationFormSchemas(publisher); if (isEmpty(dataRequestSchemas)) { - //create the questionStatus from the master schema let questionStatus = await this.getDefaultQuestionStates(); + let questionSetStatus = await this.getDefaultQuestionSetStates(); const newSchema = { publisher: publisher.name, status: 'draft', isCloneable: true, questionStatus, + questionSetStatus, guidance: {}, countOfChanges: 0, unpublishedGuidance: [], @@ -34,6 +35,7 @@ export default class QuestionbankService { return { masterSchema, questionStatus: schema.questionStatus, + questionSetStatus: schema.questionSetStatus, guidance: schema.guidance, countOfChanges: schema.countOfChanges, schemaId: schema._id, @@ -44,6 +46,7 @@ export default class QuestionbankService { const latestSchemaVersion = dataRequestSchemas[0]; if (latestSchemaVersion.status === 'draft') { let newQuestionStatus = latestSchemaVersion.questionStatus; + let newQuestionSetStatus = latestSchemaVersion.questionSetStatus; let newQuestionsAdded = this.addQuestionsFromMasterSchema(masterSchema, latestSchemaVersion, newQuestionStatus); //Add new questions from the master schema if any @@ -53,6 +56,7 @@ export default class QuestionbankService { return { masterSchema, questionStatus: newQuestionStatus, + questionSetStatus: newQuestionSetStatus, guidance: latestSchemaVersion.guidance, countOfChanges: latestSchemaVersion.countOfChanges, schemaId: latestSchemaVersion._id, @@ -63,15 +67,18 @@ export default class QuestionbankService { if (latestSchemaVersion.status === 'active') { if (!isEmpty(latestSchemaVersion.questionStatus)) { let newQuestionStatus = latestSchemaVersion.questionStatus; + let newQuestionSetStatus = latestSchemaVersion.questionSetStatus; //Add new questions from the master schema if any this.addQuestionsFromMasterSchema(masterSchema, latestSchemaVersion, newQuestionStatus); + this.addQuestionSetsFromMasterSchema(masterSchema, latestSchemaVersion, newQuestionSetStatus); const newSchema = { publisher: publisher.name, status: 'draft', isCloneable: true, questionStatus: newQuestionStatus, + questionSetStatus: newQuestionSetStatus, guidance: latestSchemaVersion.guidance, version: latestSchemaVersion.version + 1, countOfChanges: 0, @@ -83,6 +90,7 @@ export default class QuestionbankService { return { masterSchema, questionStatus: newSchema.questionStatus, + questionSetStatus: newSchema.questionSetStatus, guidance: newSchema.guidance, countOfChanges: newSchema.countOfChanges, schemaId: schema._id, @@ -90,18 +98,21 @@ export default class QuestionbankService { }; } else { let questionStatus = {}; + let questionSetStatus = {}; //Add questions from the publisher schema this.addQuestionsFromPublisherSchema(latestSchemaVersion, questionStatus); //Add question from master schema if not in the publisher schema this.addQuestionsFromMasterSchema(masterSchema, latestSchemaVersion, questionStatus); + this.addQuestionSetsFromMasterSchema(masterSchema, latestSchemaVersion, questionSetStatus); const newSchema = { publisher: publisher.name, status: 'draft', isCloneable: true, questionStatus, + questionSetStatus, guidance: {}, countOfChanges: 0, version: latestSchemaVersion.version + 1, @@ -113,6 +124,7 @@ export default class QuestionbankService { return { masterSchema, questionStatus: newSchema.questionStatus, + questionSetStatus: newSchema.questionSetStatus, guidance: newSchema.guidance, countOfChanges: newSchema.countOfChanges, schemaId: schema._id, @@ -194,6 +206,14 @@ export default class QuestionbankService { return newQuestionsAdded; } + addQuestionSetsFromMasterSchema(masterSchema, publisherSchema, questionSetStatus) { + masterSchema.questionSets.forEach(questionSet => { + if (!has(publisherSchema.questionSetStatus, questionSet.questionSetId)) { + questionSetStatus[questionSet.questionSetId] = 1; + } + }); + } + async revertChanges(publisherId, target) { const publisher = await this.publisherService.getPublisher(publisherId); const dataRequestSchemas = await this.dataRequestRepository.getApplicationFormSchemas(publisher); @@ -260,6 +280,21 @@ export default class QuestionbankService { return defaultQuestionStates; } + async getDefaultQuestionSetStates() { + const global = await this.globalService.getGlobal({ localeId: 'en-gb' }); + const masterSchema = global.masterSchema; + + let defaultQuestionSetStates = {}; + + masterSchema.questionSets.forEach(questionSet => { + if (!has(publisherSchema.questionSetStatus, questionSet.questionSetId)) { + defaultQuestionSetStates[questionSet.questionSetId] = 1; + } + }); + + return defaultQuestionStates; + } + async getPanelQuestions(target) { const global = await this.globalService.getGlobal({ localeId: 'en-gb' }); const questionSets = global.masterSchema.questionSets; From 899de6e55d4ba8e8027912c0021305852286a779 Mon Sep 17 00:00:00 2001 From: Peter Hammans Date: Mon, 20 Jun 2022 11:48:22 +0100 Subject: [PATCH 52/67] Add question set to output schema --- src/resources/datarequest/datarequest.controller.js | 3 +++ src/resources/datarequest/datarequest.model.js | 4 ++++ src/resources/datarequest/datarequest.service.js | 7 +++++-- 3 files changed, 12 insertions(+), 2 deletions(-) diff --git a/src/resources/datarequest/datarequest.controller.js b/src/resources/datarequest/datarequest.controller.js index 20e00e5f..209ae19c 100644 --- a/src/resources/datarequest/datarequest.controller.js +++ b/src/resources/datarequest/datarequest.controller.js @@ -256,6 +256,7 @@ export default class DataRequestController extends Controller { // 5. If in progress application found use existing endpoint to handle logic to fetch and return if (accessRecord) { + console.log('Exists'); req.params.id = accessRecord._id; return await this.getAccessRequestById(req, res); } else { @@ -266,6 +267,8 @@ export default class DataRequestController extends Controller { datasetfields: { publisher = '' }, } = datasets[0]; + console.log('Building'); + // 1. GET the template from the custodian or take the default (Cannot have dataset specific question sets for multiple datasets) accessRecord = await this.dataRequestService.buildApplicationForm( publisher, diff --git a/src/resources/datarequest/datarequest.model.js b/src/resources/datarequest/datarequest.model.js index 9ce1c8b0..6a82bd2f 100644 --- a/src/resources/datarequest/datarequest.model.js +++ b/src/resources/datarequest/datarequest.model.js @@ -45,6 +45,10 @@ const DataRequestSchema = new Schema( type: Object, default: {}, }, + questionSetStatus: { + type: Object, + default: {}, + }, initialQuestionAnswers: { type: Object, default: {}, diff --git a/src/resources/datarequest/datarequest.service.js b/src/resources/datarequest/datarequest.service.js index 6dd2c8c3..026c2dda 100644 --- a/src/resources/datarequest/datarequest.service.js +++ b/src/resources/datarequest/datarequest.service.js @@ -102,8 +102,10 @@ export default class DataRequestService { // 2. Get schema to base application form on const dataRequestSchema = await this.dataRequestRepository.getApplicationFormSchema(publisher); + console.log('dataRequestSchema', dataRequestSchema); + // 3. Build up the accessModel for the user - const { jsonSchema, _id: schemaId, isCloneable = false } = dataRequestSchema; + const { jsonSchema, _id: schemaId, questionSetStatus, isCloneable = false } = dataRequestSchema; // 4. Set form type const formType = schemaId.toString === constants.enquiryFormId ? constants.formTypes.Enquiry : constants.formTypes.Extended5Safe; @@ -126,6 +128,7 @@ export default class DataRequestService { applicationStatus: constants.applicationStatuses.INPROGRESS, formType, presubmissionTopic, + questionSetStatus, }; } @@ -580,7 +583,7 @@ export default class DataRequestService { } darContributorsInfo.map(contributorInfo => { - if (isUndefined(contributorInfo.user)) { + if (isUndefined(contributorInfo.user)) { helper.hidePrivateProfileDetails([contributorInfo]); } }); From e7820180c5042fef0a2d59d646d3d68271de560a Mon Sep 17 00:00:00 2001 From: Dan Nita Date: Tue, 21 Jun 2022 12:23:37 +0100 Subject: [PATCH 53/67] added params for Retry Policy --- .../datarequest/datarequest.controller.js | 7 +++--- src/resources/message/message.controller.js | 7 +++--- src/services/google/PubSubWithRetryService.js | 22 +++++++++++++------ 3 files changed, 23 insertions(+), 13 deletions(-) diff --git a/src/resources/datarequest/datarequest.controller.js b/src/resources/datarequest/datarequest.controller.js index 0bd20b65..257bda60 100644 --- a/src/resources/datarequest/datarequest.controller.js +++ b/src/resources/datarequest/datarequest.controller.js @@ -466,11 +466,12 @@ export default class DataRequestController extends Controller { id: accessRecord.publisherObj._id, name: accessRecord.publisherObj.name, }, - data: { + details: { dataRequestId: accessRecord._id, createdDate: accessRecord.createdAt, - data: accessRecord.questionAnswers, - } + questionBank: accessRecord.questionAnswers, + }, + darIntegration: publisherDetails['dar-integration'], }; await publishMessageWithRetryToPubSub(process.env.PUBSUB_TOPIC_ENQUIRY, JSON.stringify(pubSubMessage)); } diff --git a/src/resources/message/message.controller.js b/src/resources/message/message.controller.js index 1f4b0187..4bfee28a 100644 --- a/src/resources/message/message.controller.js +++ b/src/resources/message/message.controller.js @@ -199,13 +199,14 @@ module.exports = { id: publisherDetails._id, name: publisherDetails.name, }, - data: { + details: { topicId: topicObj._id, messageId: message.messageID, createdDate: message.createdDate, - data: req.body.firstMessage, + questionBank: req.body.firstMessage, - } + }, + darIntegration: publisherDetails['dar-integration'], }; await publishMessageWithRetryToPubSub(process.env.PUBSUB_TOPIC_ENQUIRY, JSON.stringify(pubSubMessage)); } diff --git a/src/services/google/PubSubWithRetryService.js b/src/services/google/PubSubWithRetryService.js index 2bc7822f..da06ddc7 100644 --- a/src/services/google/PubSubWithRetryService.js +++ b/src/services/google/PubSubWithRetryService.js @@ -27,6 +27,14 @@ export const publishMessageWithRetryToPubSub = async (topicName, message) => { messages, }; + const initialRetryDelayMillis = parseInt(process.env.PUBSUB_RP_INITIAL_RETRY_DELAY) || 100; + const retryDelayMultiplier = parseFloat(process.env.PUBSUB_RP_RETRY_DELAY_MULTIPLIER) || 2.0; + const maxRetryDelayMillis = parseInt(process.env.PUBSUB_RP_MAX_RETRY_DELAY) || 60000; + const initialRpcTimeoutMillis = parseInt(process.env.PUBSUB_RP_INITIAL_RPC_TIMEOUT) || 5000; + const rpcTimeoutMultiplier = parseFloat(process.env.PUBSUB_RP_RPC_TIMEOUT_MULTIPLIER) || 2.0; + const maxRpcTimeoutMillis = parseInt(process.env.PUBSUB_RP_MAX_RPC_TIMEOUT) || 600000; + const totalTimeoutMillis = parseInt(process.env.PUBSUB_RP_TOTAL_TIMEOUT) || 600000; + // Retry settings control how the publisher handles retryable failures. Default values are shown. // The `retryCodes` array determines which grpc errors will trigger an automatic retry. // The `backoffSettings` object lets you specify the behaviour of retries over time. @@ -43,23 +51,23 @@ export const publishMessageWithRetryToPubSub = async (topicName, message) => { backoffSettings: { // The initial delay time, in milliseconds, between the completion // of the first failed request and the initiation of the first retrying request. - initialRetryDelayMillis: 100, + initialRetryDelayMillis, // The multiplier by which to increase the delay time between the completion // of failed requests, and the initiation of the subsequent retrying request. - retryDelayMultiplier: 1.3, + retryDelayMultiplier, // The maximum delay time, in milliseconds, between requests. // When this value is reached, retryDelayMultiplier will no longer be used to increase delay time. - maxRetryDelayMillis: 60000, + maxRetryDelayMillis, // The initial timeout parameter to the request. - initialRpcTimeoutMillis: 5000, + initialRpcTimeoutMillis, // The multiplier by which to increase the timeout parameter between failed requests. - rpcTimeoutMultiplier: 1.0, + rpcTimeoutMultiplier, // The maximum timeout parameter, in milliseconds, for a request. When this value is reached, // rpcTimeoutMultiplier will no longer be used to increase the timeout. - maxRpcTimeoutMillis: 600000, + maxRpcTimeoutMillis, // The total time, in milliseconds, starting from when the initial request is sent, // after which an error will be returned, regardless of the retrying attempts made meanwhile. - totalTimeoutMillis: 600000, + totalTimeoutMillis, }, }; From 38cac08c26723b2b6bfb18a48dd04b138a213c31 Mon Sep 17 00:00:00 2001 From: Peter Hammans Date: Thu, 23 Jun 2022 14:14:00 +0100 Subject: [PATCH 54/67] Clear question set status --- .../questionbank/questionbank.service.js | 33 ++++++++++++------- 1 file changed, 21 insertions(+), 12 deletions(-) diff --git a/src/resources/questionbank/questionbank.service.js b/src/resources/questionbank/questionbank.service.js index ec5aa640..56d7b6b8 100644 --- a/src/resources/questionbank/questionbank.service.js +++ b/src/resources/questionbank/questionbank.service.js @@ -1,3 +1,4 @@ +import { Console } from '@sentry/node/dist/integrations'; import { isEmpty, has } from 'lodash'; export default class QuestionbankService { @@ -223,13 +224,15 @@ export default class QuestionbankService { } // Default previous state is the master schema - let previousState = await this.getDefaultQuestionStates(); - + let previousQuestionStatus = await this.getDefaultQuestionStates(); + let previousQuestionSetStatus = await this.getDefaultQuestionSetStates(); let guidance = {}; let unpublishedGuidance = []; + // Is previous version exists, previousState is last schema version if (dataRequestSchemas.length > 1) { - previousState = dataRequestSchemas[1].questionStatus; + previousQuestionStatus = dataRequestSchemas[1].questionStatus; + previousQuestionSetStatus = dataRequestSchemas[1].questionSetStatus; guidance = dataRequestSchemas[1].guidance || {}; } @@ -237,12 +240,19 @@ export default class QuestionbankService { let countOfChanges = 0; if (target) { const panelQuestions = await this.getPanelQuestions(target); - const updates = Object.keys(previousState).filter(key => !panelQuestions.includes(key)); + const updateQuestionStatus = Object.keys(previousQuestionStatus).filter(key => !panelQuestions.includes(key)); + + const global = await this.globalService.getGlobal({ localeId: 'en-gb' }); + const questionSets = global.masterSchema.formPanels.filter(({ pageId }) => pageId !== target); + + questionSets.forEach(({ panelId }) => { + previousQuestionSetStatus[panelId] = dataRequestSchemas[0].questionSetStatus[panelId]; + }); - updates.forEach(key => { - if (previousState[key] !== dataRequestSchemas[0].questionStatus[key]) countOfChanges += 1; + updateQuestionStatus.forEach(key => { + if (previousQuestionStatus[key] !== dataRequestSchemas[0].questionStatus[key]) countOfChanges += 1; - previousState[key] = dataRequestSchemas[0].questionStatus[key]; + previousQuestionStatus[key] = dataRequestSchemas[0].questionStatus[key]; if (dataRequestSchemas[0].unpublishedGuidance.includes(key)) { unpublishedGuidance.push(key); @@ -255,7 +265,8 @@ export default class QuestionbankService { } await this.dataRequestRepository.updateApplicationFormSchemaById(dataRequestSchemas[0]._id, { - questionStatus: previousState, + questionStatus: previousQuestionStatus, + questionSetStatus: previousQuestionSetStatus, unpublishedGuidance, guidance, countOfChanges, @@ -287,12 +298,10 @@ export default class QuestionbankService { let defaultQuestionSetStates = {}; masterSchema.questionSets.forEach(questionSet => { - if (!has(publisherSchema.questionSetStatus, questionSet.questionSetId)) { - defaultQuestionSetStates[questionSet.questionSetId] = 1; - } + defaultQuestionSetStates[questionSet.questionSetId] = 1; }); - return defaultQuestionStates; + return defaultQuestionSetStates; } async getPanelQuestions(target) { From 72793a895d39b196c6cae2c974a6a562531261ea Mon Sep 17 00:00:00 2001 From: Peter Hammans Date: Thu, 23 Jun 2022 14:37:00 +0100 Subject: [PATCH 55/67] Question bank tests --- .../activeSchemaCreatedThroughForm.js | 8 +++++++ .../draftSchemaCreatedThroughForm.js | 4 ++++ .../questionbank/__mocks__/questionbank.js | 13 ++++++++++ .../__tests__/questionbank.service.test.js | 24 +++++++++++++++++++ 4 files changed, 49 insertions(+) diff --git a/src/resources/questionbank/__mocks__/activeSchemaCreatedThroughForm.js b/src/resources/questionbank/__mocks__/activeSchemaCreatedThroughForm.js index 2ffe4a21..1c4d7e71 100644 --- a/src/resources/questionbank/__mocks__/activeSchemaCreatedThroughForm.js +++ b/src/resources/questionbank/__mocks__/activeSchemaCreatedThroughForm.js @@ -7,6 +7,10 @@ export const dataRequestSchema = { countOfChanges: 0, status: 'active', isCloneable: true, + questionSetStatus: { + 'safepeople-primaryapplicant': 1, + 'safepeople-otherindividuals': 1, + }, questionStatus: { safedatadataflowdiagramenclosed: 1, safeoutputsoutputsdisseminationplansproposalfindings: 0, @@ -26,6 +30,10 @@ export const dataRequestSchema = { }; export const expectedSchema = { + questionSetStatus: { + 'safepeople-primaryapplicant': 1, + 'safepeople-otherindividuals': 1, + }, questionStatus: { safedatadataflowdiagramenclosed: 1, safeoutputsoutputsdisseminationplansproposalfindings: 0, diff --git a/src/resources/questionbank/__mocks__/draftSchemaCreatedThroughForm.js b/src/resources/questionbank/__mocks__/draftSchemaCreatedThroughForm.js index 00779cec..992141b1 100644 --- a/src/resources/questionbank/__mocks__/draftSchemaCreatedThroughForm.js +++ b/src/resources/questionbank/__mocks__/draftSchemaCreatedThroughForm.js @@ -12,6 +12,10 @@ export const dataRequestSchema = { safepeopleprimaryapplicantjobtitle: 'Guidance for safepeopleprimaryapplicantjobtitle', safepeopleprimaryapplicanttelephone: 'Guidance for safepeopleprimaryapplicanttelephone', }, + questionSetStatus: { + 'safepeople-primaryapplicant': 1, + 'safepeople-otherindividuals': 0, + }, questionStatus: { safepeopleprimaryapplicantfullname: 0, safepeopleprimaryapplicantjobtitle: 1, diff --git a/src/resources/questionbank/__mocks__/questionbank.js b/src/resources/questionbank/__mocks__/questionbank.js index e9c48506..b9df7b68 100644 --- a/src/resources/questionbank/__mocks__/questionbank.js +++ b/src/resources/questionbank/__mocks__/questionbank.js @@ -199,5 +199,18 @@ export const globalDocument = { ], }, ], + formPanels: [ + { panelId: 'safepeople-primaryapplicant', index: 1, pageId: 'safepeople' }, + { + panelId: 'safepeople-otherindividuals', + pageId: 'safepeople', + index: 2, + }, + { + panelId: 'safeproject-projectdetails', + pageId: 'safeproject', + index: 3, + }, + ], }, }; diff --git a/src/resources/questionbank/__tests__/questionbank.service.test.js b/src/resources/questionbank/__tests__/questionbank.service.test.js index 155debe3..bbf3c577 100644 --- a/src/resources/questionbank/__tests__/questionbank.service.test.js +++ b/src/resources/questionbank/__tests__/questionbank.service.test.js @@ -125,6 +125,10 @@ describe('Question Bank Service', function () { safepeopleotherindividualsjobtitle: 0, safepeopleotherindividualsorganisation: 0, }, + questionSetStatus: { + 'safepeople-primaryapplicant': 0, + 'safepeople-otherindividuals': 0, + }, unpublishedGuidance: ['safepeopleprimaryapplicantfullname'], }, { @@ -138,6 +142,10 @@ describe('Question Bank Service', function () { safepeopleotherindividualsjobtitle: 1, safepeopleotherindividualsorganisation: 1, }, + questionSetStatus: { + 'safepeople-primaryapplicant': 1, + 'safepeople-otherindividuals': 1, + }, unpublishedGuidance: [], }, ]); @@ -154,6 +162,10 @@ describe('Question Bank Service', function () { safepeopleotherindividualsjobtitle: 1, safepeopleotherindividualsorganisation: 1, }, + questionSetStatus: { + 'safepeople-primaryapplicant': 1, + 'safepeople-otherindividuals': 1, + }, unpublishedGuidance: [], guidance: {}, countOfChanges: 0, @@ -177,6 +189,10 @@ describe('Question Bank Service', function () { safeprojectprojectdetailstype: 0, safeprojectprojectdetailsneworexisting: 0, }, + questionSetStatus: { + 'safepeople-primaryapplicant': 0, + 'safeproject-projectdetails': 0, + }, unpublishedGuidance: ['safepeopleprimaryapplicantfullname'], }, { @@ -190,6 +206,10 @@ describe('Question Bank Service', function () { safeprojectprojectdetailstype: 1, safeprojectprojectdetailsneworexisting: 1, }, + questionSetStatus: { + 'safepeople-primaryapplicant': 1, + 'safeproject-projectdetails': 1, + }, unpublishedGuidance: [], }, ]); @@ -206,6 +226,10 @@ describe('Question Bank Service', function () { safeprojectprojectdetailstype: 0, safeprojectprojectdetailsneworexisting: 0, }, + questionSetStatus: { + 'safepeople-primaryapplicant': 1, + 'safeproject-projectdetails': 0, + }, unpublishedGuidance: [], guidance: {}, countOfChanges: 3, From 380f5e907aac0efac6c9d6d47f7e0b399845c90b Mon Sep 17 00:00:00 2001 From: Peter Hammans Date: Fri, 24 Jun 2022 09:26:20 +0100 Subject: [PATCH 56/67] Remove console logs --- src/resources/datarequest/datarequest.controller.js | 3 --- src/resources/datarequest/datarequest.service.js | 2 -- 2 files changed, 5 deletions(-) diff --git a/src/resources/datarequest/datarequest.controller.js b/src/resources/datarequest/datarequest.controller.js index 209ae19c..20e00e5f 100644 --- a/src/resources/datarequest/datarequest.controller.js +++ b/src/resources/datarequest/datarequest.controller.js @@ -256,7 +256,6 @@ export default class DataRequestController extends Controller { // 5. If in progress application found use existing endpoint to handle logic to fetch and return if (accessRecord) { - console.log('Exists'); req.params.id = accessRecord._id; return await this.getAccessRequestById(req, res); } else { @@ -267,8 +266,6 @@ export default class DataRequestController extends Controller { datasetfields: { publisher = '' }, } = datasets[0]; - console.log('Building'); - // 1. GET the template from the custodian or take the default (Cannot have dataset specific question sets for multiple datasets) accessRecord = await this.dataRequestService.buildApplicationForm( publisher, diff --git a/src/resources/datarequest/datarequest.service.js b/src/resources/datarequest/datarequest.service.js index 026c2dda..7f69530e 100644 --- a/src/resources/datarequest/datarequest.service.js +++ b/src/resources/datarequest/datarequest.service.js @@ -102,8 +102,6 @@ export default class DataRequestService { // 2. Get schema to base application form on const dataRequestSchema = await this.dataRequestRepository.getApplicationFormSchema(publisher); - console.log('dataRequestSchema', dataRequestSchema); - // 3. Build up the accessModel for the user const { jsonSchema, _id: schemaId, questionSetStatus, isCloneable = false } = dataRequestSchema; From d7ebd84b1c0a99f86aaef2dd6c27a4a2f04cdde6 Mon Sep 17 00:00:00 2001 From: kandaj Date: Fri, 24 Jun 2022 14:40:30 +0100 Subject: [PATCH 57/67] question bank flag added --- src/resources/publisher/publisher.model.js | 3 +++ src/resources/team/team.controller.js | 4 ++-- 2 files changed, 5 insertions(+), 2 deletions(-) diff --git a/src/resources/publisher/publisher.model.js b/src/resources/publisher/publisher.model.js index 97539243..c8775295 100644 --- a/src/resources/publisher/publisher.model.js +++ b/src/resources/publisher/publisher.model.js @@ -41,6 +41,9 @@ const PublisherSchema = new Schema( accessRequestCost: String, dataUseLimitation: [String], dataUseRequirements: [String], + questionBank: { + enabled: { type: Boolean, default: false }, + }, }, mdcFolderId: String, rorOrgId: String, diff --git a/src/resources/team/team.controller.js b/src/resources/team/team.controller.js index 531a12c1..da714fe1 100644 --- a/src/resources/team/team.controller.js +++ b/src/resources/team/team.controller.js @@ -578,7 +578,7 @@ const getTeamsList = async (req, res) => { membersCount: { $size: '$members' }, } ) - .populate('publisher', { name: 1, 'publisherDetails.name': 1, 'publisherDetails.memberOf': 1 }) + .populate('publisher', { name: 1, 'publisherDetails.name': 1, 'publisherDetails.memberOf': 1, 'questionBank.enabled': 1 }) .populate('users', { firstname: 1, lastname: 1 }) .sort({ updatedAt: -1 }) .lean(); @@ -1052,7 +1052,7 @@ const filterMembersByNoticationTypesOptIn = (members, notificationTypes) => { } return some(member.notifications, notification => { - return includes(notificationTypes, notification.notificationType) && (notification.optIn === true); + return includes(notificationTypes, notification.notificationType) && notification.optIn === true; }); }); }; From 9c089bc68a029e8bb69bbd512f0ff43fbfd6887b Mon Sep 17 00:00:00 2001 From: Callum Reekie Date: Fri, 24 Jun 2022 15:25:50 +0100 Subject: [PATCH 58/67] add questionBankEnabled flag to PUT --- src/resources/team/team.controller.js | 10 +++++++++- 1 file changed, 9 insertions(+), 1 deletion(-) diff --git a/src/resources/team/team.controller.js b/src/resources/team/team.controller.js index da714fe1..468a3395 100644 --- a/src/resources/team/team.controller.js +++ b/src/resources/team/team.controller.js @@ -768,7 +768,12 @@ const editTeam = async (req, res) => { } const id = req.params.id; - const { name, memberOf, contactPoint } = req.body; + const { name, memberOf, contactPoint, questionBankEnabled } = req.body; + + if (!(typeof questionBankEnabled === 'boolean')) { + return res.status(400).json({ success: false, message: 'questionBankEnabled must be of boolean type' }); + } + const existingTeamDetails = await PublisherModel.findOne({ _id: ObjectId(id) }).lean(); //3. Update Team @@ -780,6 +785,9 @@ const editTeam = async (req, res) => { name, memberOf, contactPoint, + questionBank: { + enabled: questionBankEnabled, + }, }, }, err => { From 116d3f6db9219fdad2076e3550404966e3bb83b7 Mon Sep 17 00:00:00 2001 From: Callum Reekie Date: Fri, 24 Jun 2022 15:40:13 +0100 Subject: [PATCH 59/67] add questionBankEnabled flag to PUT - UPDATE --- src/resources/team/team.controller.js | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/src/resources/team/team.controller.js b/src/resources/team/team.controller.js index 468a3395..2dabda77 100644 --- a/src/resources/team/team.controller.js +++ b/src/resources/team/team.controller.js @@ -770,7 +770,7 @@ const editTeam = async (req, res) => { const id = req.params.id; const { name, memberOf, contactPoint, questionBankEnabled } = req.body; - if (!(typeof questionBankEnabled === 'boolean')) { + if (!_.isUndefined(questionBankEnabled) && !(typeof questionBankEnabled === 'boolean')) { return res.status(400).json({ success: false, message: 'questionBankEnabled must be of boolean type' }); } @@ -785,9 +785,9 @@ const editTeam = async (req, res) => { name, memberOf, contactPoint, - questionBank: { - enabled: questionBankEnabled, - }, + ...(!_.isUndefined(questionBankEnabled) && { + 'questionBank.enabled': questionBankEnabled, + }), }, }, err => { From 1c1a3c37d99fda0b5a0bebb5f88f2012d5ab628b Mon Sep 17 00:00:00 2001 From: Peter Hammans Date: Tue, 28 Jun 2022 13:14:30 +0100 Subject: [PATCH 60/67] Fixes --- src/resources/questionbank/questionbank.service.js | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/resources/questionbank/questionbank.service.js b/src/resources/questionbank/questionbank.service.js index 56d7b6b8..84cf8e40 100644 --- a/src/resources/questionbank/questionbank.service.js +++ b/src/resources/questionbank/questionbank.service.js @@ -298,7 +298,7 @@ export default class QuestionbankService { let defaultQuestionSetStates = {}; masterSchema.questionSets.forEach(questionSet => { - defaultQuestionSetStates[questionSet.questionSetId] = 1; + defaultQuestionSetStates[questionSet.questionSetId] = typeof questionSet.active !== 'undefined' ? questionSet.active : 1; }); return defaultQuestionSetStates; From 91ccbbf8c88643f54c5bc0d92c279520b12b65bc Mon Sep 17 00:00:00 2001 From: Callum Reekie Date: Thu, 30 Jun 2022 11:31:03 +0100 Subject: [PATCH 61/67] fix limit on datasetsv2 api --- src/resources/base/repository.js | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/resources/base/repository.js b/src/resources/base/repository.js index 471c7d56..f7ea7d91 100644 --- a/src/resources/base/repository.js +++ b/src/resources/base/repository.js @@ -48,7 +48,7 @@ export default class Repository { // Pagination const page = query.page * 1 || 1; - const limit = (query["limit"] !== undefined) ? query.limit * 1 : 500; + const limit = query['limit'] !== undefined ? query.limit * 1 : 1500; const skip = (page - 1) * limit; results = results.skip(skip).limit(limit); From 1d99b5585126dc3415acbf512aa53214fd21c38e Mon Sep 17 00:00:00 2001 From: Peter Hammans Date: Mon, 4 Jul 2022 16:10:17 +0100 Subject: [PATCH 62/67] Update question bank in publisher --- src/resources/publisher/publisher.controller.js | 13 +++++++++++++ src/resources/publisher/publisher.route.js | 7 +++++++ src/resources/publisher/publisher.service.js | 11 +++++++++-- 3 files changed, 29 insertions(+), 2 deletions(-) diff --git a/src/resources/publisher/publisher.controller.js b/src/resources/publisher/publisher.controller.js index b124b197..a701cc47 100644 --- a/src/resources/publisher/publisher.controller.js +++ b/src/resources/publisher/publisher.controller.js @@ -173,4 +173,17 @@ export default class PublisherController extends Controller { }); } } + + async updateQuestionBank(req, res) { + try { + await this.publisherService.updateQuestionBank(req.params.id, req.body).then(() => { + return res.status(200).json({ success: true }); + }); + } catch (err) { + return res.status(500).json({ + success: false, + message: 'An error occurred updating the question bank settings', + }); + } + } } diff --git a/src/resources/publisher/publisher.route.js b/src/resources/publisher/publisher.route.js index 43cbcb99..614e0664 100644 --- a/src/resources/publisher/publisher.route.js +++ b/src/resources/publisher/publisher.route.js @@ -59,4 +59,11 @@ router.patch('/dataRequestModalContent/:id', passport.authenticate('jwt'), utils publisherController.updateDataRequestModalContent(req, res) ); +router.patch( + '/:id/questionbank', + passport.authenticate('jwt'), + logger.logRequestMiddleware({ logCategory, action: 'Updating question bank enabled / disabled' }), + (req, res) => publisherController.updateQuestionBank(req, res) +); + module.exports = router; diff --git a/src/resources/publisher/publisher.service.js b/src/resources/publisher/publisher.service.js index 00b706dc..a3d7e06c 100644 --- a/src/resources/publisher/publisher.service.js +++ b/src/resources/publisher/publisher.service.js @@ -95,10 +95,9 @@ export default class PublisherService { return filteredApplications; } - async update(document, body = {}) { return this.publisherRepository.update(document, body); - } + } async updateDataRequestModalContent(publisherId, requestingUserId, content) { await this.publisherRepository.updatePublisher( @@ -109,6 +108,14 @@ export default class PublisherService { dataRequestModalContent: { header: '', body: content, footer: '' }, } ); + } + async updateQuestionBank(publisherId, data) { + await this.publisherRepository.updatePublisher( + { _id: publisherId }, + { + 'publisherDetails.questionBank': data, + } + ); } } From 4adc8ff88d4d5694212f52e4ab0ac4c9ec77ae68 Mon Sep 17 00:00:00 2001 From: Peter Hammans Date: Mon, 4 Jul 2022 16:54:39 +0100 Subject: [PATCH 63/67] Fix overriding publisherDetails --- src/resources/team/team.controller.js | 24 ++++++++++-------------- 1 file changed, 10 insertions(+), 14 deletions(-) diff --git a/src/resources/team/team.controller.js b/src/resources/team/team.controller.js index 2dabda77..a0d0ab0a 100644 --- a/src/resources/team/team.controller.js +++ b/src/resources/team/team.controller.js @@ -578,7 +578,12 @@ const getTeamsList = async (req, res) => { membersCount: { $size: '$members' }, } ) - .populate('publisher', { name: 1, 'publisherDetails.name': 1, 'publisherDetails.memberOf': 1, 'questionBank.enabled': 1 }) + .populate('publisher', { + name: 1, + 'publisherDetails.name': 1, + 'publisherDetails.memberOf': 1, + 'publisherDetails.questionBank.enabled': 1, + }) .populate('users', { firstname: 1, lastname: 1 }) .sort({ updatedAt: -1 }) .lean(); @@ -768,11 +773,7 @@ const editTeam = async (req, res) => { } const id = req.params.id; - const { name, memberOf, contactPoint, questionBankEnabled } = req.body; - - if (!_.isUndefined(questionBankEnabled) && !(typeof questionBankEnabled === 'boolean')) { - return res.status(400).json({ success: false, message: 'questionBankEnabled must be of boolean type' }); - } + const { name, memberOf, contactPoint } = req.body; const existingTeamDetails = await PublisherModel.findOne({ _id: ObjectId(id) }).lean(); @@ -781,14 +782,9 @@ const editTeam = async (req, res) => { { _id: ObjectId(id) }, { name: `${memberOf} > ${name}`, - publisherDetails: { - name, - memberOf, - contactPoint, - ...(!_.isUndefined(questionBankEnabled) && { - 'questionBank.enabled': questionBankEnabled, - }), - }, + 'publisherDetails.name': name, + 'publisherDetails.memberOf': memberOf, + 'publisherDetails.contactPoint': contactPoint, }, err => { if (err) { From eaa24d7326ccf96354833cf1e76d0ffc36cbdec7 Mon Sep 17 00:00:00 2001 From: kandaj Date: Tue, 5 Jul 2022 10:05:37 +0100 Subject: [PATCH 64/67] teams publisher details model updated --- src/resources/team/team.controller.js | 7 ++++++- 1 file changed, 6 insertions(+), 1 deletion(-) diff --git a/src/resources/team/team.controller.js b/src/resources/team/team.controller.js index da714fe1..efe2cdeb 100644 --- a/src/resources/team/team.controller.js +++ b/src/resources/team/team.controller.js @@ -578,7 +578,12 @@ const getTeamsList = async (req, res) => { membersCount: { $size: '$members' }, } ) - .populate('publisher', { name: 1, 'publisherDetails.name': 1, 'publisherDetails.memberOf': 1, 'questionBank.enabled': 1 }) + .populate('publisher', { + name: 1, + 'publisherDetails.name': 1, + 'publisherDetails.memberOf': 1, + 'publisherDetails.questionBank.enabled': 1, + }) .populate('users', { firstname: 1, lastname: 1 }) .sort({ updatedAt: -1 }) .lean(); From e7f59fbc4081a71f1a002e1b44f64af242b96e21 Mon Sep 17 00:00:00 2001 From: Callum Reekie Date: Mon, 11 Jul 2022 15:14:02 +0100 Subject: [PATCH 65/67] fix questionBank tests --- .../questionbank/__tests__/questionbank.service.test.js | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/resources/questionbank/__tests__/questionbank.service.test.js b/src/resources/questionbank/__tests__/questionbank.service.test.js index bbf3c577..5da84b7a 100644 --- a/src/resources/questionbank/__tests__/questionbank.service.test.js +++ b/src/resources/questionbank/__tests__/questionbank.service.test.js @@ -13,7 +13,7 @@ import * as noSchemaExists from '../__mocks__/noSchemaExists'; describe('Question Bank Service', function () { const dataRequestRepository = new DataRequestRepository(); const globalService = new GlobalService(); - sinon.stub(globalService, 'getGlobal').returns(questionBank.globalDocument); + sinon.stub(globalService, 'getMasterSchema').returns(questionBank.globalDocument); const publisherRepository = new PublisherRepository(); sinon.stub(publisherRepository, 'getPublisher').returns(questionBank.publisherDocument); const publisherService = new PublisherService(publisherRepository); From d315aee48c48173e2c48504fb01867e5d4afca4c Mon Sep 17 00:00:00 2001 From: Callum Reekie Date: Tue, 12 Jul 2022 14:54:20 +0100 Subject: [PATCH 66/67] fix for creating new team --- src/resources/team/team.controller.js | 30 ++++++++++++++------------- 1 file changed, 16 insertions(+), 14 deletions(-) diff --git a/src/resources/team/team.controller.js b/src/resources/team/team.controller.js index f538b5e1..1b56a88b 100644 --- a/src/resources/team/team.controller.js +++ b/src/resources/team/team.controller.js @@ -722,7 +722,7 @@ const addTeam = async (req, res) => { // 11. Send email and notification to managers await createNotifications(constants.notificationTypes.TEAMADDED, { recipients }, name, req.user, publisherId); - return res.status(200).json({ success: true }); + return res.status(200).json({ success: true, _id: newTeam._id }); } catch (err) { console.error(err.message); return res.status(500).json({ @@ -971,21 +971,23 @@ const checkIfAdmin = (user, adminRoles) => { const getTeamMembersByRole = (team, role) => { let { members = [], users = [] } = team; - let userIds = members.filter(mem => { - if (mem.roles.includes(role) || (role === 'All' && _.has(mem, 'roles'))) { - if(!_.has(mem, 'notifications')) { - return true; - } + let userIds = members + .filter(mem => { + if (mem.roles.includes(role) || (role === 'All' && _.has(mem, 'roles'))) { + if (!_.has(mem, 'notifications')) { + return true; + } - if (_.has(mem, 'notifications') && mem.notifications.length === 0) { - return true; - } - - if (_.has(mem, 'notifications') && mem.notifications.length && mem.notifications[0].optIn) { - return true; + if (_.has(mem, 'notifications') && mem.notifications.length === 0) { + return true; + } + + if (_.has(mem, 'notifications') && mem.notifications.length && mem.notifications[0].optIn) { + return true; + } } - } - }).map(mem => mem.memberid.toString()); + }) + .map(mem => mem.memberid.toString()); return users.filter(user => userIds.includes(user._id.toString())); }; From 327dc04ebb3e6231350ed7ba25b9b4c9c9829776 Mon Sep 17 00:00:00 2001 From: Callum Reekie Date: Fri, 15 Jul 2022 15:37:07 +0100 Subject: [PATCH 67/67] fix email attachments --- src/resources/utilities/emailGenerator.util.js | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/src/resources/utilities/emailGenerator.util.js b/src/resources/utilities/emailGenerator.util.js index 907c58a2..cfd68d19 100644 --- a/src/resources/utilities/emailGenerator.util.js +++ b/src/resources/utilities/emailGenerator.util.js @@ -2668,12 +2668,12 @@ const _generateEmailFooter = (recipient, allowUnsubscribe) => { `; }; -const _generateAttachment = (filename, content, type) => { +const _generateAttachment = (filename, content, contentType) => { return { content, filename, - type, - disposition: 'attachment', + contentType, + encoding: 'base64', }; };
- A new Workflow has been ${action}. + A ${action == 'created' ? 'new' : ''} Workflow has been ${action}.
- ${actioner} has ${action} ${workflowName} on ${moment(createdAt).format('D MMM YYYY')} + A data access request ${workflowName} workflow has been ${action} by ${actioner} on ${moment(currentDate).format( + 'D MMM YYYY' + )}