diff --git a/.github/workflows/gui-release.yml b/.github/workflows/gui-release.yml
index 07988b3..2073ee7 100644
--- a/.github/workflows/gui-release.yml
+++ b/.github/workflows/gui-release.yml
@@ -32,7 +32,7 @@ jobs:
poetry run pip install --upgrade setuptools
- name: Building GUI
run: |
- poetry run pyinstaller --name=LAS-TRX-${{ steps.tag.outputs.tag }} --onefile --icon='las_trx/resources/las-trx.ico' --add-data='las_trx/resources/las-trx.ico:resources' las_trx/main.py
+ poetry run pyinstaller --name=LAS-TRX-${{ steps.tag.outputs.tag }} --onefile --icon='las_trx/resources/las-trx.ico' --add-data='las_trx/resources/las-trx.ico:resources' las_trx/__main__.py
- name: Gzip release
run: |
tar -czvf dist/LAS-TRX-${{ steps.tag.outputs.tag }}-linux.tar.gz -C dist LAS-TRX-${{ steps.tag.outputs.tag }}
@@ -66,7 +66,7 @@ jobs:
poetry run pip install --upgrade setuptools
- name: Building GUI
run: |
- poetry run pyinstaller --name=LAS-TRX-${{ steps.tag.outputs.tag }} --onefile --windowed --icon='las_trx\resources\las-trx.ico' --add-data='las_trx\resources\las-trx.ico;resources' las_trx\main.py
+ poetry run pyinstaller --name=LAS-TRX-${{ steps.tag.outputs.tag }} --onefile --windowed --icon='las_trx\resources\las-trx.ico' --add-data='las_trx\resources\las-trx.ico;resources' las_trx\__main__.py
- name: Zip release
run: |
cd dist
@@ -79,7 +79,7 @@ jobs:
path: dist/LAS-TRX-${{ steps.tag.outputs.tag }}-win64.zip
Release:
- needs: [Linux, Windows]
+ needs: [ Linux, Windows ]
runs-on: ubuntu-latest
steps:
diff --git a/.gitignore b/.gitignore
index ef6761b..2f33c3a 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,128 +1,3 @@
-### VisualStudioCode template
-.vscode/*
-!.vscode/settings.json
-!.vscode/tasks.json
-!.vscode/launch.json
-!.vscode/extensions.json
-*.code-workspace
-
-# Local History for Visual Studio Code
-.history/
-
-### JetBrains template
-# Covers JetBrains IDEs: IntelliJ, RubyMine, PhpStorm, AppCode, PyCharm, CLion, Android Studio, WebStorm and Rider
-# Reference: https://intellij-support.jetbrains.com/hc/en-us/articles/206544839
-
-# User-specific stuff
-.idea/**/workspace.xml
-.idea/**/tasks.xml
-.idea/**/usage.statistics.xml
-.idea/**/dictionaries
-.idea/**/shelf
-
-# Generated files
-.idea/**/contentModel.xml
-
-# Sensitive or high-churn files
-.idea/**/dataSources/
-.idea/**/dataSources.ids
-.idea/**/dataSources.local.xml
-.idea/**/sqlDataSources.xml
-.idea/**/dynamic.xml
-.idea/**/uiDesigner.xml
-.idea/**/dbnavigator.xml
-
-# Gradle
-.idea/**/gradle.xml
-.idea/**/libraries
-
-# Gradle and Maven with auto-import
-# When using Gradle or Maven with auto-import, you should exclude module files,
-# since they will be recreated, and may cause churn. Uncomment if using
-# auto-import.
-# .idea/artifacts
-# .idea/compiler.xml
-# .idea/jarRepositories.xml
-# .idea/modules.xml
-# .idea/*.iml
-# .idea/modules
-# *.iml
-# *.ipr
-
-# CMake
-cmake-build-*/
-
-# Mongo Explorer plugin
-.idea/**/mongoSettings.xml
-
-# File-based project format
-*.iws
-
-# IntelliJ
-out/
-
-# mpeltonen/sbt-idea plugin
-.idea_modules/
-
-# JIRA plugin
-atlassian-ide-plugin.xml
-
-# Cursive Clojure plugin
-.idea/replstate.xml
-
-# Crashlytics plugin (for Android Studio and IntelliJ)
-com_crashlytics_export_strings.xml
-crashlytics.properties
-crashlytics-build.properties
-fabric.properties
-
-# Editor-based Rest Client
-.idea/httpRequests
-
-# Android studio 3.1+ serialized cache file
-.idea/caches/build_file_checksums.ser
-
-### Linux template
-*~
-
-# temporary files which can be created if a process still has a handle open of a deleted file
-.fuse_hidden*
-
-# KDE directory preferences
-.directory
-
-# Linux trash folder which might appear on any partition or disk
-.Trash-*
-
-# .nfs files are created when an open file is removed but is still being accessed
-.nfs*
-
-### Windows template
-# Windows thumbnail cache files
-Thumbs.db
-Thumbs.db:encryptable
-ehthumbs.db
-ehthumbs_vista.db
-
-# Dump file
-*.stackdump
-
-# Folder config file
-[Dd]esktop.ini
-
-# Recycle Bin used on file shares
-$RECYCLE.BIN/
-
-# Windows Installer files
-*.cab
-*.msi
-*.msix
-*.msm
-*.msp
-
-# Windows shortcuts
-*.lnk
-
### Python template
# Byte-compiled / optimized / DLL files
__pycache__/
diff --git a/.idea/Las-TRX.iml b/.idea/Las-TRX.iml
index 4570734..5322436 100644
--- a/.idea/Las-TRX.iml
+++ b/.idea/Las-TRX.iml
@@ -4,6 +4,8 @@
+
+
diff --git a/las_trx/main.py b/las_trx/__main__.py
old mode 100644
new mode 100755
similarity index 98%
rename from las_trx/main.py
rename to las_trx/__main__.py
index 7943e95..1fcb8ae
--- a/las_trx/main.py
+++ b/las_trx/__main__.py
@@ -247,7 +247,7 @@ def convert(self):
self.thread.start()
-class LogStream(object):
+class LogWriteStream(object):
def __init__(self, queue):
super().__init__()
self.queue = queue
@@ -256,7 +256,7 @@ def write(self, text):
self.queue.put(text)
-class LogThread(QThread):
+class LogDisplayThread(QThread):
on_msg = Signal(str)
def __init__(self, queue: Queue, *args, **kwargs):
@@ -277,7 +277,7 @@ def run(self):
# Configure logging
log_msg_queue = Queue()
- log_write_stream = LogStream(log_msg_queue)
+ log_write_stream = LogWriteStream(log_msg_queue)
log_handler = logging.StreamHandler(log_write_stream)
logging.basicConfig(level=logging.INFO, handlers=[log_handler])
@@ -288,7 +288,7 @@ def run(self):
# When a new message is written to the log_queue via the log_write_stream, log_thread emits a signal that causes the main
# window to display that msg in the textBrowser
- log_thread = LogThread(log_msg_queue)
+ log_thread = LogDisplayThread(log_msg_queue)
log_thread.on_msg.connect(window.append_text)
app.aboutToQuit.connect(log_thread.requestInterruption)
log_thread.start()
diff --git a/las_trx/worker.py b/las_trx/worker.py
old mode 100644
new mode 100755
index d0c7175..c7df36c
--- a/las_trx/worker.py
+++ b/las_trx/worker.py
@@ -1,6 +1,5 @@
import copy
import logging
-import math
import multiprocessing
import os
from concurrent import futures
@@ -8,6 +7,7 @@
from time import sleep
import laspy
+import math
import numpy as np
from PySide2.QtCore import QThread, Signal
from laspy import LasHeader
@@ -30,7 +30,7 @@ class TransformWorker(QThread):
error = Signal(BaseException)
def __init__(
- self, config: TransformConfig, input_files: list[Path], output_files: list[Path]
+ self, config: TransformConfig, input_files: list[Path], output_files: list[Path]
):
super().__init__(parent=None)
self.config = config
@@ -77,6 +77,8 @@ def _do_transform(self):
config = self.config.dict(exclude_none=True)
futs = []
for input_file, output_file in zip(self.input_files, self.output_files):
+ if not Path(output_file).suffix:
+ output_file += ".laz"
logger.info(f"{input_file} -> {output_file}")
fut = self.pool.submit(
transform, config, input_file, output_file, self.lock, self.current_iter
@@ -112,11 +114,11 @@ def run(self):
def transform(
- config: dict,
- input_file: Path,
- output_file: Path,
- lock: multiprocessing.RLock,
- cur: multiprocessing.Value,
+ config: dict,
+ input_file: Path,
+ output_file: Path,
+ lock: multiprocessing.RLock,
+ cur: multiprocessing.Value,
):
transformer = CSRSTransformer(**config)
config = TransformConfig(**config)
@@ -132,7 +134,7 @@ def transform(
logger.debug(f"{laz_backend=}")
with laspy.open(
- output_file, mode="w", header=new_header, laz_backend=laz_backend
+ output_file, mode="w", header=new_header, laz_backend=laz_backend
) as out_las:
for points in in_las.chunk_iterator(CHUNK_SIZE):
# Convert the coordinates
@@ -153,7 +155,7 @@ def transform(
def write_header_offsets(
- header: "LasHeader", input_file: Path, transformer: "CSRSTransformer"
+ header: "LasHeader", input_file: Path, transformer: "CSRSTransformer"
) -> "LasHeader":
with laspy.open(input_file) as in_las:
points = next(in_las.chunk_iterator(CHUNK_SIZE))
@@ -172,10 +174,10 @@ def clear_header_geokeys(header: "LasHeader") -> "LasHeader":
# Update GeoKeyDirectoryVLR
# check and remove any existing crs vlrs
for crs_vlr_name in (
- "WktCoordinateSystemVlr",
- "GeoKeyDirectoryVlr",
- "GeoAsciiParamsVlr",
- "GeoDoubleParamsVlr",
+ "WktCoordinateSystemVlr",
+ "GeoKeyDirectoryVlr",
+ "GeoAsciiParamsVlr",
+ "GeoDoubleParamsVlr",
):
try:
header.vlrs.extract(crs_vlr_name)
diff --git a/poetry.lock b/poetry.lock
old mode 100644
new mode 100755
index 95fb15e..ee0cdac
--- a/poetry.lock
+++ b/poetry.lock
@@ -8,7 +8,7 @@ python-versions = "*"
[[package]]
name = "atomicwrites"
-version = "1.4.0"
+version = "1.4.1"
description = "Atomic file writes."
category = "dev"
optional = false
@@ -16,21 +16,21 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
[[package]]
name = "attrs"
-version = "21.4.0"
+version = "22.1.0"
description = "Classes Without Boilerplate"
category = "dev"
optional = false
-python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
+python-versions = ">=3.5"
[package.extras]
-dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"]
+dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"]
docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"]
-tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "zope.interface", "cloudpickle"]
-tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "six", "mypy", "pytest-mypy-plugins", "cloudpickle"]
+tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "zope.interface", "cloudpickle"]
+tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "cloudpickle"]
[[package]]
name = "black"
-version = "22.3.0"
+version = "22.6.0"
description = "The uncompromising code formatter."
category = "dev"
optional = false
@@ -41,7 +41,7 @@ click = ">=8.0.0"
mypy-extensions = ">=0.4.3"
pathspec = ">=0.9.0"
platformdirs = ">=2"
-tomli = {version = ">=1.1.0", markers = "python_version < \"3.11\""}
+tomli = {version = ">=1.1.0", markers = "python_full_version < \"3.11.0a7\""}
typing-extensions = {version = ">=3.10.0.0", markers = "python_version < \"3.10\""}
[package.extras]
@@ -52,15 +52,15 @@ uvloop = ["uvloop (>=0.15.2)"]
[[package]]
name = "certifi"
-version = "2021.10.8"
+version = "2022.6.15"
description = "Python package for providing Mozilla's CA Bundle."
category = "main"
optional = false
-python-versions = "*"
+python-versions = ">=3.6"
[[package]]
name = "click"
-version = "8.1.2"
+version = "8.1.3"
description = "Composable command line interface toolkit"
category = "dev"
optional = false
@@ -71,7 +71,7 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""}
[[package]]
name = "colorama"
-version = "0.4.4"
+version = "0.4.5"
description = "Cross-platform colored terminal text."
category = "dev"
optional = false
@@ -79,8 +79,8 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
[[package]]
name = "csrspy"
-version = "0.2.3"
-description = ""
+version = "0.2.4"
+description = "ITRF/NAD83CSRS coordinate transforms in Python"
category = "main"
optional = false
python-versions = ">=3.8,<4.0"
@@ -106,19 +106,20 @@ python-versions = "*"
[[package]]
name = "laspy"
-version = "2.1.2"
+version = "2.2.0"
description = "Native Python ASPRS LAS read/write library"
category = "main"
optional = false
-python-versions = "*"
+python-versions = ">=3.7"
[package.dependencies]
numpy = "*"
[package.extras]
-dev = ["pytest", "sphinx", "sphinx-rtd-theme", "nox", "black (==20.8b1)", "pytest-benchmark", "m2r2"]
+dev = ["pytest", "sphinx", "sphinx-rtd-theme", "nox", "black (==22.3.0)", "pytest-benchmark", "m2r2"]
laszip = ["laszip (>=0.1.0,<0.2.0)"]
-lazrs = ["lazrs (>=0.4.0,<0.5.0)"]
+lazrs = ["lazrs (>=0.4.3,<0.5.0)"]
+pyproj = ["pyproj"]
[[package]]
name = "laszip"
@@ -149,7 +150,7 @@ python-versions = "*"
[[package]]
name = "numpy"
-version = "1.22.3"
+version = "1.23.2"
description = "NumPy is the fundamental package for array computing with Python."
category = "main"
optional = false
@@ -176,7 +177,7 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7"
[[package]]
name = "pefile"
-version = "2021.9.3"
+version = "2022.5.30"
description = "Python PE parsing module"
category = "dev"
optional = false
@@ -187,15 +188,15 @@ future = "*"
[[package]]
name = "platformdirs"
-version = "2.5.1"
+version = "2.5.2"
description = "A small Python module for determining appropriate platform-specific dirs, e.g. a \"user data dir\"."
category = "dev"
optional = false
python-versions = ">=3.7"
[package.extras]
-docs = ["Sphinx (>=4)", "furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)"]
-test = ["appdirs (==1.4.4)", "pytest (>=6)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)"]
+docs = ["furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)", "sphinx (>=4)"]
+test = ["appdirs (==1.4.4)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)", "pytest (>=6)"]
[[package]]
name = "pluggy"
@@ -219,8 +220,8 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*"
[[package]]
name = "pydantic"
-version = "1.9.0"
-description = "Data validation and settings management using python 3.6 type hinting"
+version = "1.9.2"
+description = "Data validation and settings management using python type hints"
category = "main"
optional = false
python-versions = ">=3.6.1"
@@ -234,17 +235,17 @@ email = ["email-validator (>=1.0.3)"]
[[package]]
name = "pyinstaller"
-version = "4.10"
+version = "5.3"
description = "PyInstaller bundles a Python application and all its dependencies into a single package."
category = "dev"
optional = false
-python-versions = "<3.11,>=3.6"
+python-versions = "<3.11,>=3.7"
[package.dependencies]
altgraph = "*"
macholib = {version = ">=1.8", markers = "sys_platform == \"darwin\""}
-pefile = {version = ">=2017.8.1", markers = "sys_platform == \"win32\""}
-pyinstaller-hooks-contrib = ">=2020.6"
+pefile = {version = ">=2022.5.30", markers = "sys_platform == \"win32\""}
+pyinstaller-hooks-contrib = ">=2021.4"
pywin32-ctypes = {version = ">=0.2.0", markers = "sys_platform == \"win32\""}
[package.extras]
@@ -253,7 +254,7 @@ hook_testing = ["pytest (>=2.7.3)", "execnet (>=1.5.0)", "psutil"]
[[package]]
name = "pyinstaller-hooks-contrib"
-version = "2022.3"
+version = "2022.8"
description = "Community maintained hooks for PyInstaller"
category = "dev"
optional = false
@@ -261,7 +262,7 @@ python-versions = ">=3.7"
[[package]]
name = "pyparsing"
-version = "3.0.8"
+version = "3.0.9"
description = "pyparsing module - Classes and methods to define and execute parsing grammars"
category = "dev"
optional = false
@@ -272,7 +273,7 @@ diagrams = ["railroad-diagrams", "jinja2"]
[[package]]
name = "pyproj"
-version = "3.3.0"
+version = "3.3.1"
description = "Python interface to PROJ (cartographic projections and coordinate transformations library)"
category = "main"
optional = false
@@ -294,7 +295,7 @@ shiboken2 = "5.15.2.1"
[[package]]
name = "pytest"
-version = "7.1.1"
+version = "7.1.2"
description = "pytest: simple powerful testing with Python"
category = "dev"
optional = false
@@ -339,71 +340,29 @@ python-versions = ">=3.7"
[[package]]
name = "typing-extensions"
-version = "4.1.1"
-description = "Backported and Experimental Type Hints for Python 3.6+"
+version = "4.3.0"
+description = "Backported and Experimental Type Hints for Python 3.7+"
category = "main"
optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
[metadata]
lock-version = "1.1"
python-versions = "^3.9,<3.11"
-content-hash = "9c3d78c3d36ee2f91529dbe2a728e25890c759c0ded4e2e237ee41f198e3fba6"
+content-hash = "857c1810be5d5b79eda2d08bd908e03bad1f3436b9850539ac946351b6fb93c1"
[metadata.files]
altgraph = [
{file = "altgraph-0.17.2-py2.py3-none-any.whl", hash = "sha256:743628f2ac6a7c26f5d9223c91ed8ecbba535f506f4b6f558885a8a56a105857"},
{file = "altgraph-0.17.2.tar.gz", hash = "sha256:ebf2269361b47d97b3b88e696439f6e4cbc607c17c51feb1754f90fb79839158"},
]
-atomicwrites = [
- {file = "atomicwrites-1.4.0-py2.py3-none-any.whl", hash = "sha256:6d1784dea7c0c8d4a5172b6c620f40b6e4cbfdf96d783691f2e1302a7b88e197"},
- {file = "atomicwrites-1.4.0.tar.gz", hash = "sha256:ae70396ad1a434f9c7046fd2dd196fc04b12f9e91ffb859164193be8b6168a7a"},
-]
-attrs = [
- {file = "attrs-21.4.0-py2.py3-none-any.whl", hash = "sha256:2d27e3784d7a565d36ab851fe94887c5eccd6a463168875832a1be79c82828b4"},
- {file = "attrs-21.4.0.tar.gz", hash = "sha256:626ba8234211db98e869df76230a137c4c40a12d72445c45d5f5b716f076e2fd"},
-]
-black = [
- {file = "black-22.3.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:2497f9c2386572e28921fa8bec7be3e51de6801f7459dffd6e62492531c47e09"},
- {file = "black-22.3.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:5795a0375eb87bfe902e80e0c8cfaedf8af4d49694d69161e5bd3206c18618bb"},
- {file = "black-22.3.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:e3556168e2e5c49629f7b0f377070240bd5511e45e25a4497bb0073d9dda776a"},
- {file = "black-22.3.0-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:67c8301ec94e3bcc8906740fe071391bce40a862b7be0b86fb5382beefecd968"},
- {file = "black-22.3.0-cp310-cp310-win_amd64.whl", hash = "sha256:fd57160949179ec517d32ac2ac898b5f20d68ed1a9c977346efbac9c2f1e779d"},
- {file = "black-22.3.0-cp36-cp36m-macosx_10_9_x86_64.whl", hash = "sha256:cc1e1de68c8e5444e8f94c3670bb48a2beef0e91dddfd4fcc29595ebd90bb9ce"},
- {file = "black-22.3.0-cp36-cp36m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:6d2fc92002d44746d3e7db7cf9313cf4452f43e9ea77a2c939defce3b10b5c82"},
- {file = "black-22.3.0-cp36-cp36m-win_amd64.whl", hash = "sha256:a6342964b43a99dbc72f72812bf88cad8f0217ae9acb47c0d4f141a6416d2d7b"},
- {file = "black-22.3.0-cp37-cp37m-macosx_10_9_x86_64.whl", hash = "sha256:328efc0cc70ccb23429d6be184a15ce613f676bdfc85e5fe8ea2a9354b4e9015"},
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+pydantic = []
+pyinstaller = []
+pyinstaller-hooks-contrib = []
+pyparsing = []
+pyproj = []
pyside2 = [
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@@ -573,10 +429,7 @@ pyside2 = [
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]
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+pytest = []
pywin32-ctypes = [
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@@ -593,7 +446,4 @@ tomli = [
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{file = "tomli-2.0.1.tar.gz", hash = "sha256:de526c12914f0c550d15924c62d72abc48d6fe7364aa87328337a31007fe8a4f"},
]
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-]
+typing-extensions = []
diff --git a/pyproject.toml b/pyproject.toml
old mode 100644
new mode 100755
index 85d4904..4b304bf
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
[tool.poetry]
name = "las-trx"
-version = "0.2.3"
+version = "0.3.1"
description = "Convert lidar .las/.laz file coordinates between various ITRF realizations and NAD83 CSRS."
authors = ["Taylor Denouden "]
repository = "https://github.com/HakaiInstitute/LAS-TRX"
@@ -15,7 +15,7 @@ pyproj = "^3.3.0"
laspy = "^2.1.2"
[tool.poetry.dev-dependencies]
-pyinstaller = "^4.10"
+pyinstaller = "^5.3"
pytest = "^7.1.1"
black = "^22.3.0"