From 610305f076b76802af439f31be5176dc123c5148 Mon Sep 17 00:00:00 2001 From: Taylor Denouden Date: Mon, 2 Dec 2024 13:44:39 -0800 Subject: [PATCH] Update linter, do lint fixes --- .pre-commit-config.yaml | 2 +- docs/faqs.md | 2 +- kelp_o_matic/hann.py | 3 +- kelp_o_matic/lib.py | 6 +- kelp_o_matic/managers.py | 2 +- kelp_o_matic/models.py | 4 +- poetry.lock | 1601 ++++++++++++++--------------- pyproject.toml | 3 + tests/test_TorchMemoryRegister.py | 2 +- 9 files changed, 807 insertions(+), 818 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index dc58939..50566ee 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -16,5 +16,5 @@ repos: rev: v0.5.1 hooks: - id: ruff - args: [ --fix ] + args: [ '--fix', '--select', 'I'] - id: ruff-format diff --git a/docs/faqs.md b/docs/faqs.md index 5b25b7d..31d9bd3 100644 --- a/docs/faqs.md +++ b/docs/faqs.md @@ -50,4 +50,4 @@ software. *Still have a question?* Get in touch by [sending us an email](mailto:kom.support@hakai.org) -or [file a GitHub issue](https://github.com/HakaiInstitute/kelp-o-matic/issues) \ No newline at end of file +or [file a GitHub issue](https://github.com/HakaiInstitute/kelp-o-matic/issues) diff --git a/kelp_o_matic/hann.py b/kelp_o_matic/hann.py index bb0deec..904c55f 100644 --- a/kelp_o_matic/hann.py +++ b/kelp_o_matic/hann.py @@ -1,12 +1,11 @@ import math from abc import ABCMeta, abstractmethod -from typing import Type, Annotated +from typing import Annotated, Type import numpy as np import torch from rasterio.windows import Window - # Implementation of paper: # https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0229839#pone.0229839.ref007 diff --git a/kelp_o_matic/lib.py b/kelp_o_matic/lib.py index 8050584..802d625 100644 --- a/kelp_o_matic/lib.py +++ b/kelp_o_matic/lib.py @@ -1,16 +1,16 @@ import warnings from pathlib import Path -from typing import Union, Optional +from typing import Optional, Union import rasterio from kelp_o_matic.managers import RichSegmentationManager from kelp_o_matic.models import ( + KelpRGBIPresenceSegmentationModel, + KelpRGBISpeciesSegmentationModel, KelpRGBPresenceSegmentationModel, KelpRGBSpeciesSegmentationModel, MusselRGBPresenceSegmentationModel, - KelpRGBIPresenceSegmentationModel, - KelpRGBISpeciesSegmentationModel, ) diff --git a/kelp_o_matic/managers.py b/kelp_o_matic/managers.py index c26e43b..0077fc4 100644 --- a/kelp_o_matic/managers.py +++ b/kelp_o_matic/managers.py @@ -8,7 +8,7 @@ from rich.progress import Progress, SpinnerColumn, TimeElapsedColumn from kelp_o_matic.geotiff_io import GeotiffReader, GeotiffWriter -from kelp_o_matic.hann import TorchMemoryRegister, BartlettHannKernel +from kelp_o_matic.hann import BartlettHannKernel, TorchMemoryRegister from kelp_o_matic.models import _Model from kelp_o_matic.utils import all_same diff --git a/kelp_o_matic/models.py b/kelp_o_matic/models.py index 78f3654..2bd79f4 100644 --- a/kelp_o_matic/models.py +++ b/kelp_o_matic/models.py @@ -1,6 +1,6 @@ import gc -from abc import ABC, abstractmethod, ABCMeta -from typing import Union, Type +from abc import ABC, ABCMeta, abstractmethod +from typing import Type, Union import numpy as np import torch diff --git a/poetry.lock b/poetry.lock index 86eb492..93d8f24 100644 --- a/poetry.lock +++ b/poetry.lock @@ -17,57 +17,46 @@ test = ["pytest (>=4.6)", "pytest-cov"] [[package]] name = "attrs" -version = "23.2.0" +version = "24.2.0" description = "Classes Without Boilerplate" optional = false python-versions = ">=3.7" files = [ - 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