The following Table provides the detailed mapping for the OMH Body Temperature DataPoint to the OMH to FHIR Observation Profile TODO: add link to profile and mapping table:
| Index | OMH Body Temperature Element | FHIR Attribute | Mapping Instructions |
|---|---|---|---|
| 1 | body-temperature-3.0.json | OMH to FHIR Observation Profile | |
| 2.1 | body_temperature | Observation.valueQuantity | see valueQuantity elements below |
| 2.2 | body_temperature.value | Observation.valueQuantity.value | = body_temperature.value |
| 2.3 | body_temperature.unit | Observation.valueQuantity.unit | = body_temperature.unit |
| 2.4 | body_temperature.unit | Observation.valueQuantity.system | fixed to 'http://unitsofmeasure.org' |
| 2.5 | body_temperature.unit | Observation.valueQuantity.code | Map body_temperature.unit to column 'FHIR Concept' using the OMH_FHIR_Concept_Mapping_Table |
| 3 | body.effective_time_frame | Observation.effective[x] | Mappping depends on type- see below |
| 3.1 | body.effective_time_frame.date_time | Observation.effectiveDateTime | = body.effective_time_frame.date_time |
| 3.2 | body.effective_time_frame.time_interval | Observation.effectivePeriod | see effectivePeriod elements below |
| 3.2.1 | body.effective_time_frame.time_interval.start_date_time | Observation.effectivePeriod.start | = body.effective_time_frame.time_interval.start_date_time |
| 3.2.2 | body.effective_time_frame.time_interval.end_date_time | Observation.effectivePeriod.end | = body.effective_time_frame.time_interval.end_date_time |
| 8.1 | body.measurement_location | Observation.bodySite | See bodySite elements below |
| 8.2 | body.measurement_location | Observation.bodySIte.coding[0].code | Map body.measurement_location to column 'FHIR Concept' using the OMH_FHIR_Concept_Mapping_Table |
| 8.3 | body.measurement_location | Observation.bodySIte.coding[0].system | Map body.measurement_location to column 'FHIR Concept System' using the OMH_FHIR_Concept_Mapping_Table |
| 8.4 | body.measurement_location | Observation.bodySIte.coding[0].display | Map body.measurement_location to column 'FHIR Concept display' using the OMH_FHIR_Concept_Mapping_Table |
| 9 | body.descriptive_statistic | Observation.code.coding[1] | Map descriptive statistic to the OMH to FHIR additional Observation codings ( code system http://www.fhir.org/guides/mfhir/omh_fhir_observation_codes). |
| 9.1 | body.descriptive_statistic | Observation.code.coding[1].code | concatenation of header.schema_id.name = 'body-temperature' + '-' + body.descriptive_statistic for example= body-temperature-maximum |
| 9.2 | body.descriptive_statistic | Observation.code.coding[1].system | fixed to '"http://www.fhir.org/guides/mfhir/omh_fhir_observation_codes"' |
| 9.3 | body.descriptive_statistic | Observation.code.coding[1].display | concatenation of header.schema_id.name = 'body-temperature' + '-' + body.descriptive_statistic for example= body-temperature-maximum |
| 10 | body.temporal_relationship_to_physical_activity | Observation.component[0] | A mapping between temporal-relationship-to-physical-activity and FHIR Observation Component data elements. Multiple components mapping are appended as a list |
| 10.A1 | body.temporal_relationship_to_physical_activity | Observation.component[0].code | A mapping between temporal-relationship-to-physical-activity and FHIR Observation Component.code data elements. |
| 10.A2 | body.temporal_relationship_to_physical_activity | Observation.component[0].code.coding[1].code | = 'relative-to-activity' |
| 10.A3 | body.temporal_relationship_to_physical_activity | Observation.component[0].code.coding[1].system | = "http://www.fhir.org/guides/mfhir/omh_fhir_observation_codes" |
| 10.A4 | body.temporal_relationship_to_physical_activity | Observation.component[0].code.coding[1].display | = 'OMH to FHIR Temporal Relationship To Physical Activity' |
| 10.B1 | body.temporal_relationship_to_physical_activity | Observation.component[0].valueCodeableConcept | A mapping between body.temporal_relationship_to_physical_activity and FHIR Observation Component.valueCodeableConcept data elements. |
| 10.B2 | body.temporal_relationship_to_physical_activity | Observation.component[0].valueCodeableConcept.coding[0].code | Map body.temporal_relationship_to_physical_activity to column 'FHIR Concept' using the OMH_FHIR_Concept_Mapping_Table |
| 10.B3 | body.temporal_relationship_to_physical_activity | Observation.component[0].valueCodeableConcept.coding[0].system | Map body.temporal_relationship_to_physical_activity to column 'FHIR Concept System' using the OMH_FHIR_Concept_Mapping_Table |
| 10.B4 | body.temporal_relationship_to_physical_activity | Observation.component[0].valueCodeableConcept.coding[0].display | Map body.temporal_relationship_to_physical_activity to column 'FHIR Concept display' using the OMH_FHIR_Concept_Mapping_Table |
| 10.B5 | body.temporal_relationship_to_physical_activity | Observation.component[0].valueCodeableConcept.text | = body.temporal_relationship_to_physical_activity |
| 11 | body.temporal_relationship_to_sleep | Observation.component[0] | A mapping table between OMH schema ('datapoint_variables') and FHIR Observation Component data elements. Multiple components mapping are appended as a list |
| 11.A1 | body.temporal_relationship_to_sleep | Observation.component[0].code | A mapping between temporal-relationship-to-sleep and FHIR Observation Component.code data elements. |
| 11.A2 | body.temporal_relationship_to_sleep | Observation.component[0].code.coding[1].code | = 'relative-to-sleep' |
| 11.A3 | body.temporal_relationship_to_sleep | Observation.component[0].code.coding[1].system | = "http://www.fhir.org/guides/mfhir/omh_fhir_observation_codes" |
| 11.A4 | body.temporal_relationship_to_sleep | Observation.component[0].code.coding[1].display | = 'OMH to FHIR Temporal Relationship To Sleep' |
| 11.B1 | body.temporal_relationship_to_sleep | Observation.component[0].valueCodeableConcept | A mapping between body.temporal_relationship_to_sleep and FHIR Observation Component.valueCodeableConcept data elements. |
| 11.B2 | body.temporal_relationship_to_sleep | Observation.component[0].valueCodeableConcept.coding[0].code | Map body.temporal_relationship_to_sleep to column 'FHIR Concept' using the OMH_FHIR_Concept_Mapping_Table |
| 11.B3 | body.temporal_relationship_to_sleep | Observation.component[0].valueCodeableConcept.coding[0].system | Map body.temporal_relationship_to_sleep to column 'FHIR Concept System' using the OMH_FHIR_Concept_Mapping_Table |
| 11.B4 | body.temporal_relationship_to_sleep | Observation.component[0].valueCodeableConcept.coding[0].display | Map body.temporal_relationship_to_sleep to column 'FHIR Concept display' using the OMH_FHIR_Concept_Mapping_Table |
| 11.B5 | body.temporal_relationship_to_sleep | Observation.component[0].valueCodeableConcept.text | = body.temporal_relationship_to_sleep |
The following OMH body-temperature schema instance:
{
"header": {
"id": "080997cb-224e-499e-8584-90b6d50184c7",
"creation_date_time": "2020-05-30T01:15:47.285652Z",
"schema_id": {
"namespace": "omh",
"name": "body-temperature",
"version": "3.0"
},
"acquisition_provenance": {
"source_name": "Acme body-temperature device",
"source_creation_date_time": "2020-05-30T01:15:47.285652Z",
"source_data_point_id": "fc18d8d4-9cbf-4163-9514-2ad54fe0397b",
"modality": "sensed"
},
"user_id": "e78f7659-c0d4-4308-8961-ff4180f0dff1"
},
"body": {
"body_temperature": {
"value": 96.5,
"unit": "F"
},
"effective_time_frame": {
"date_time": "2013-02-05T06:25:00Z"
},
"temporal_relationship_to_sleep": "on waking"
}
}Maps to this FHIR Observation (note that this example does not include the optional Provenance resource)
{
"resourceType": "Observation",
"meta": {
"profile": [
"http://www.fhir.org/mfhir/StructureDefinition/omh_fhir_profile_quantitative_observation"
]
},
"identifier": [
{
"system": "https://omh.org/shimmer/ids",
"value": "080997cb-224e-499e-8584-90b6d50184c7"
}
],
"status": "unknown",
"category": [
{
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/observation-category",
"code": "vital-signs",
"display": "Vital Signs"
}
]
}
],
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "8310-5",
"display": "Body temperature"
}
]
},
"subject": {
"identifier": {
"system": "https://omh.org/shimmer/patient_ids",
"value": "e78f7659-c0d4-4308-8961-ff4180f0dff1"
}
},
"effectiveDateTime": "2013-02-05T06:25:00Z",
"issued": "2020-05-30T01:15:47.285652Z",
"valueQuantity": {
"value": 96.5,
"unit": "F",
"system": "http://unitsofmeasure.org",
"code": "[degF]"
},
"device": {
"extension": [
{
"url": "http://www.fhir.org/mfhir/StructureDefinition/omh_fhir_observation_device_modality",
"valueCode": "sensed"
}
],
"display": "Acme body-temperature device"
},
"component": [
{
"code": {
"coding": [
{
"system": "http://www.fhir.org/guides/mfhir/omh_fhir_observation_codes",
"code": "relative-to-sleep",
"display": "OMH to FHIR Temporal Relationship To Sleep"
}
]
},
"valueCodeableConcept": {
"coding": [
{
"system": "http://snomed.info/sct",
"code": "307156004",
"display": "On waking"
}
],
"text": "on waking"
}
}
]
}The following OMH body-temperature schema instance:
{
"header": {
"id": "de15187e-cd8a-46eb-90e7-5ff1303007dc",
"creation_date_time": "2020-05-30T01:36:06.311337Z",
"schema_id": {
"namespace": "omh",
"name": "body-temperature",
"version": "3.0"
},
"acquisition_provenance": {
"source_name": "Acme body-temperature device",
"source_creation_date_time": "2020-05-30T01:36:06.311337Z",
"source_data_point_id": "8b6aa922-5d03-4471-8e2d-0bc13e3bff6c",
"modality": "sensed"
},
"user_id": "95718638-98b4-4c3d-8040-0301d2b805f4"
},
"body": {
"body_temperature": {
"value": 97,
"unit": "F"
},
"effective_time_frame": {
"date_time": "2013-02-05T07:25:00Z"
},
"measurement_location": "forehead"
}
}Maps to this FHIR Observation (note that this example does not include the optional Provenance resource)
{
"resourceType": "Observation",
"meta": {
"profile": [
"http://www.fhir.org/mfhir/StructureDefinition/omh_fhir_profile_quantitative_observation"
]
},
"identifier": [
{
"system": "https://omh.org/shimmer/ids",
"value": "de15187e-cd8a-46eb-90e7-5ff1303007dc"
}
],
"status": "unknown",
"category": [
{
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/observation-category",
"code": "vital-signs",
"display": "Vital Signs"
}
]
}
],
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "8310-5",
"display": "Body temperature"
}
]
},
"subject": {
"identifier": {
"system": "https://omh.org/shimmer/patient_ids",
"value": "95718638-98b4-4c3d-8040-0301d2b805f4"
}
},
"effectiveDateTime": "2013-02-05T07:25:00Z",
"issued": "2020-05-30T01:36:06.311337Z",
"valueQuantity": {
"value": 97,
"unit": "F",
"system": "http://unitsofmeasure.org",
"code": "[degF]"
},
"bodySite": {
"coding": [
{
"system": "http://www.fhir.org/guides/mfhir/CodeSystem/body-location",
"code": "forehead"
}
],
"text": "forehead"
},
"device": {
"extension": [
{
"url": "http://www.fhir.org/mfhir/StructureDefinition/omh_fhir_observation_device_modality",
"valueCode": "sensed"
}
],
"display": "Acme body-temperature device"
}
}The following OMH body-temperature schema instance:
{
"header": {
"id": "e694349f-ac2c-4712-86b1-c09152c35667",
"creation_date_time": "2020-05-30T01:43:16.250809Z",
"schema_id": {
"namespace": "omh",
"name": "body-temperature",
"version": "3.0"
},
"acquisition_provenance": {
"source_name": "Acme body-temperature device",
"source_creation_date_time": "2020-05-30T01:43:16.250809Z",
"source_data_point_id": "3e36c93c-1e40-4f9f-8d9d-8570aec95d55",
"modality": "sensed"
},
"user_id": "2c95c8db-5b06-4651-a606-b51406fcc4d4"
},
"body": {
"body_temperature": {
"value": 96.5,
"unit": "F"
},
"effective_time_frame": {
"time_interval": {
"start_date_time": "2020-02-05T06:00:00-08:00",
"end_date_time": "2020-02-06T06:00:00-08:00"
}
},
"measurement_location": "oral",
"descriptive_statistic": "maximum"
}
}Maps to this FHIR Observation (note that this example does not include the optional Provenance resource)
{
"resourceType": "Observation",
"meta": {
"profile": [
"http://www.fhir.org/mfhir/StructureDefinition/omh_fhir_profile_quantitative_observation"
]
},
"identifier": [
{
"system": "https://omh.org/shimmer/ids",
"value": "e694349f-ac2c-4712-86b1-c09152c35667"
}
],
"status": "unknown",
"category": [
{
"coding": [
{
"system": "http://terminology.hl7.org/CodeSystem/observation-category",
"code": "vital-signs",
"display": "Vital Signs"
}
]
}
],
"code": {
"coding": [
{
"system": "http://loinc.org",
"code": "8310-5",
"display": "Body temperature"
},
{
"system": "http://hl7.org/fhir/omh_fhir_observation_codes",
"code": "body-temperature-maximum",
"display": "Body Temperature-Maximum"
}
]
},
"subject": {
"identifier": {
"system": "https://omh.org/shimmer/patient_ids",
"value": "2c95c8db-5b06-4651-a606-b51406fcc4d4"
}
},
"effectivePeriod": {
"start": "2020-02-05T06:00:00-08:00",
"end": "2020-02-06T06:00:00-08:00"
},
"issued": "2020-05-30T01:43:16.250809Z",
"valueQuantity": {
"value": 96.5,
"unit": "F",
"system": "http://unitsofmeasure.org",
"code": "[degF]"
},
"bodySite": {
"coding": [
{
"system": "http://www.fhir.org/guides/mfhir/CodeSystem/intervention-administration-route",
"code": "oral"
}
],
"text": "oral"
},
"device": {
"extension": [
{
"url": "http://www.fhir.org/mfhir/StructureDefinition/omh_fhir_observation_device_modality",
"valueCode": "sensed"
}
],
"display": "Acme body-temperature device"
}
}
---
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