Change constructor CI to Miniforge (Mambaforge deprecated) #27
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| name: Build and push Docker Images from modified configuration.yaml | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths-ignore: | |
| - '**.md' | |
| - '**.txt' | |
| jobs: | |
| extract_changed_files: | |
| name: Find changed configurations | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| outputs: | |
| matrix: ${{ steps.create-json.outputs.matrix }} | |
| steps: | |
| - name: Clone DL4MicEverywhere repository | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 # OR "2" -> To retrieve the preceding commit. | |
| - name: Get changed configuration.yaml on the commint | |
| id: changed-files | |
| uses: tj-actions/changed-files@v41 | |
| with: | |
| files: '**/configuration.yaml' | |
| - if: ${{ steps.changed-files.outputs.all_changed_files != '' }} | |
| name: List and extract all changed files | |
| id: create-json | |
| run: | | |
| echo "Start" | |
| files_json="{\"include\":[{\"notebook\":\"" | |
| echo "$files_json" | |
| first=true | |
| for file in ${{ steps.changed-files.outputs.all_changed_files }}; do | |
| echo "$file was changed" | |
| if [ "$first" = true ]; then | |
| files_json+=$file | |
| first=false | |
| else | |
| files_json+="\"},{\"notebook\":\""$file | |
| fi | |
| echo "$files_json" | |
| done | |
| files_json+="\"}]}" | |
| echo "$files_json" | |
| echo "matrix=$files_json" >> $GITHUB_OUTPUT | |
| echo "END" | |
| check_keys: | |
| name: Check attributes/keys on modified configuration.yaml | |
| if: ${{ needs.extract_changed_files.outputs.matrix != '' }} | |
| runs-on: [ubuntu-latest] | |
| strategy: | |
| # put fail-fast as false if you want to see all results even if one fails, | |
| # fail-fast is true by default | |
| fail-fast: false | |
| matrix: ${{ fromJson(needs.extract_changed_files.outputs.matrix) }} | |
| needs: [extract_changed_files] | |
| outputs: | |
| ubuntu_version: ${{ steps.ubuntu_version.outputs.result }} | |
| cuda_version: ${{ steps.cuda_version.outputs.result }} | |
| cudnn_version: ${{ steps.cudnn_version.outputs.result }} | |
| python_version: ${{ steps.python_version.outputs.result }} | |
| notebook_url: ${{ steps.notebook_url.outputs.result }} | |
| requirements_url: ${{ steps.requirements_url.outputs.result }} | |
| notebook_name: ${{ steps.notebook_name.outputs.value }} | |
| docker_tag: ${{ steps.docker_tag.outputs.value }} | |
| sections_to_remove: ${{ steps.sections_to_remove.outputs.result }} | |
| description: ${{ steps.description.outputs.result }} | |
| steps: | |
| - name: Clone DL4MicEverywhere repository | |
| uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: '3.9' | |
| cache: 'pip' # caching pip dependencies | |
| - name: Install requirements | |
| run: pip install -r .tools/requirements.txt | |
| - name: Update the docker_tag on the configuration | |
| run: python3 .tools/python_tools/update_configuration.py '${{ matrix.notebook }}' | |
| - name: Check notebook_url attribute on configuration.yaml | |
| uses: mikefarah/yq@master | |
| id: notebook_url | |
| with: | |
| cmd: yq '.config.dl4miceverywhere.notebook_url' '${{ matrix.notebook }}' | |
| - name: Check requirements_url attribute on configuration.yaml | |
| uses: mikefarah/yq@master | |
| id: requirements_url | |
| with: | |
| cmd: yq '.config.dl4miceverywhere.requirements_url' '${{ matrix.notebook }}' | |
| - name: Check cuda_version attribute on configuration.yaml | |
| uses: mikefarah/yq@master | |
| id: cuda_version | |
| with: | |
| cmd: yq '.config.dl4miceverywhere.cuda_version' '${{ matrix.notebook }}' | |
| - name: Check cudnn_version attribute on configuration.yaml | |
| uses: mikefarah/yq@master | |
| id: cudnn_version | |
| with: | |
| cmd: yq '.config.dl4miceverywhere.cudnn_version' '${{ matrix.notebook }}' | |
| - name: Check ubuntu_version attribute on configuration.yaml | |
| uses: mikefarah/yq@master | |
| id: ubuntu_version | |
| with: | |
| cmd: yq '.config.dl4miceverywhere.ubuntu_version' '${{ matrix.notebook }}' | |
| - name: Check python_version attribute on configuration.yaml | |
| uses: mikefarah/yq@master | |
| id: python_version | |
| with: | |
| cmd: yq '.config.dl4miceverywhere.python_version' '${{ matrix.notebook }}' | |
| - name: Check sections_to_remove attribute on configuration.yaml | |
| uses: mikefarah/yq@master | |
| id: sections_to_remove | |
| with: | |
| cmd: yq '.config.dl4miceverywhere.sections_to_remove' '${{ matrix.notebook }}' | |
| - name: Check docker_tag attribute on configuration.yaml | |
| uses: mikefarah/yq@master | |
| id: docker_tag | |
| with: | |
| cmd: yq '.config.dl4miceverywhere.docker_hub_image' '${{ matrix.notebook }}' | |
| - name: Check description attribute on configuration.yaml | |
| uses: mikefarah/yq@master | |
| id: description | |
| with: | |
| cmd: yq '.config.dl4miceverywhere.description' '${{ matrix.notebook }}' | |
| - name: Get notebook_name | |
| id: notebook_name | |
| run: | | |
| notebook_name="$(basename ${{ steps.notebook_url.outputs.result }})" | |
| echo "value=$notebook_name" >> $GITHUB_OUTPUT | |
| - run: | | |
| if [[ 'null' = '${{ steps.notebook_url.outputs.result }}' ]] ; then | |
| echo 'The key notebook_url is not in the configuration.yaml file.' | |
| exit 1 | |
| elif [[ 'null' = '${{ steps.requirements_url.outputs.result }}' ]] ; then | |
| echo 'The key requirements_url is not in the configuration.yaml file.' | |
| exit 1 | |
| elif [[ 'null' = '${{ steps.cuda_version.outputs.result }}' ]] ; then | |
| echo 'The key cuda_version is not in the configuration.yaml file.' | |
| exit 1 | |
| elif [[ 'null' = '${{ steps.cudnn_version.outputs.result }}' ]] ; then | |
| echo 'The key cudnn_version is not in the configuration.yaml file.' | |
| exit 1 | |
| elif [[ 'null' = '${{ steps.ubuntu_version.outputs.result }}' ]] ; then | |
| echo 'The key ubuntu_version is not in the configuration.yaml file.' | |
| exit 1 | |
| elif [[ 'null' = '${{ steps.python_version.outputs.result }}' ]] ; then | |
| echo 'The key python_version is not in the configuration.yaml file.' | |
| exit 1 | |
| elif [[ 'null' = '${{ steps.sections_to_remove.outputs.result }}' ]] ; then | |
| echo 'The key sections_to_remove is not in the configuration.yaml file.' | |
| exit 1 | |
| elif [[ 'null' = '${{ steps.docker_tag.outputs.result }}' ]] ; then | |
| echo 'The key docker_hub_image is not in the configuration.yaml file.' | |
| exit 1 | |
| elif [[ 'null' = '${{ steps.description.outputs.result }}' ]] ; then | |
| echo 'The key description is not in the configuration.yaml file.' | |
| exit 1 | |
| else | |
| echo 'The configuration.yaml file is defined with all its keys.' | |
| fi | |
| check_urls: | |
| name: Check notebook's and requirements' URLs | |
| if: ${{ needs.extract_changed_files.outputs.matrix != '' }} | |
| runs-on: [ubuntu-latest] | |
| strategy: | |
| # super important if you want to see all results, even if one fails | |
| # fail-fast is true by default | |
| fail-fast: false | |
| matrix: ${{ fromJson(needs.extract_changed_files.outputs.matrix) }} | |
| needs: [check_keys, extract_changed_files] | |
| steps: | |
| - name: Clone DL4MicEverywhere repository | |
| uses: actions/checkout@v4 | |
| with: | |
| fetch-depth: 0 | |
| - name: Check that notebook's URL exists | |
| uses: filiph/[email protected] | |
| with: | |
| arguments: ${{ needs.check_keys.outputs.notebook_url }} | |
| - name: Check that requirements' URL exists | |
| uses: filiph/[email protected] | |
| with: | |
| arguments: ${{ needs.check_keys.outputs.requirements_url }} | |
| configuration_matrix: | |
| name: Call the building and pushing | |
| if: ${{ needs.extract_changed_files.outputs.matrix != '' }} | |
| needs: extract_changed_files | |
| strategy: | |
| # super important if you want to see all results, even if one fails | |
| # fail-fast is true by default | |
| fail-fast: false | |
| matrix: ${{ fromJson(needs.extract_changed_files.outputs.matrix) }} | |
| uses: ./.github/workflows/build_docker_images_aux.yml # calls the one above ^ | |
| with: | |
| config_file: ${{ matrix.notebook }} | |
| secrets: inherit | |