diff --git a/examples/parallel/KTH_PDC/lateral_inhibition/one_population/Dardel_runSnudda_onepop.job b/examples/parallel/KTH_PDC/lateral_inhibition/one_population/Dardel_runSnudda_onepop.job index 8c7cddda7..97e2b8fda 100644 --- a/examples/parallel/KTH_PDC/lateral_inhibition/one_population/Dardel_runSnudda_onepop.job +++ b/examples/parallel/KTH_PDC/lateral_inhibition/one_population/Dardel_runSnudda_onepop.job @@ -2,14 +2,17 @@ #SBATCH --partition=main #SBATCH -o log/runSnudda-%j-output.txt #SBATCH -e log/runSnudda-%j-error.txt -#SBATCH -t 1:59:00 +#SBATCH -t 0:59:00 #SBATCH -J Snudda #SBATCH -A naiss2023-5-231 -#SBATCH --nodes=2 -#SBATCH -n 256 +#SBATCH --nodes=1 +#SBATCH -n 128 #SBATCH --cpus-per-task=2 #SBATCH --mem-per-cpu=930M -#SBATCH --mail-type=ALL +#SBATCH --mail-type=ALL + +# REMEMBER TO CREATE THE "log" DIRECTORY + module load snic-env @@ -19,8 +22,8 @@ ulimit -s unlimited #let NWORKERS="$SLURM_NTASKS-2" -let NWORKERS="100" -# let NWORKERS="50" +#let NWORKERS="100" +let NWORKERS="50" export IPNWORKERS=$NWORKERS @@ -33,7 +36,7 @@ source $HOME/Snudda/snudda_env/bin/activate #.. Start the ipcontroller export FI_CXI_DEFAULT_VNI=$(od -vAn -N4 -tu < /dev/urandom) -srun -n 1 -N 1 -c 2 --exact --overlap --mem=0 ./../ipcontroller_new.sh & +srun -n 1 -N 1 -c 2 --exact --overlap --mem=0 ./../../ipcontroller_new.sh & echo ">>> waiting 60s for controller to start" diff --git a/examples/parallel/KTH_PDC/lateral_inhibition/one_population/Dardel_runSnudda_onepop.sh b/examples/parallel/KTH_PDC/lateral_inhibition/one_population/Dardel_runSnudda_onepop.sh index 55fbca596..1941aca31 100755 --- a/examples/parallel/KTH_PDC/lateral_inhibition/one_population/Dardel_runSnudda_onepop.sh +++ b/examples/parallel/KTH_PDC/lateral_inhibition/one_population/Dardel_runSnudda_onepop.sh @@ -111,7 +111,7 @@ else #.. Shutdown ipcontroller echo "Shutting down ipcontroller" - python ../ipcontroller_shutdown.py + python ../../ipcontroller_shutdown.py date diff --git a/examples/parallel/KTH_PDC/lateral_inhibition/one_population/Dardel_simulate_onepop.job b/examples/parallel/KTH_PDC/lateral_inhibition/one_population/Dardel_simulate_onepop.job index e7fb883be..44202ed53 100644 --- a/examples/parallel/KTH_PDC/lateral_inhibition/one_population/Dardel_simulate_onepop.job +++ b/examples/parallel/KTH_PDC/lateral_inhibition/one_population/Dardel_simulate_onepop.job @@ -12,7 +12,7 @@ # You need to point this as the directory where you created the network in #NETWORK_DIR=/cfs/klemming/home/${USER:0:1}/$USER/Snudda/examples/parallel/KTH_PDC/networks/test_10k -NETWORK_DIR=networks/lateral_onepop +NETWORK_DIR=../networks/lateral_onepop export N_WORKERS=$SLURM_NTASKS diff --git a/examples/parallel/KTH_PDC/lateral_inhibition/one_population/input.json b/examples/parallel/KTH_PDC/lateral_inhibition/one_population/input.json index e35b54f78..b76dd70ee 100644 --- a/examples/parallel/KTH_PDC/lateral_inhibition/one_population/input.json +++ b/examples/parallel/KTH_PDC/lateral_inhibition/one_population/input.json @@ -3,7 +3,7 @@ "Ctx_1" : { "generator" : "poisson", "start" : [0.5, 1.0, 1.5, 2.0, 2.5, 3.0, 3.5, 4.0, 4.5, 5.0], - "end" : [1.0, 1.0, 1.5, 2.0, 2.5, 3.0, 3.5, 4.0, 4.5, 5.0, 5.5], + "end" : [1.0, 1.5, 2.0, 2.5, 3.0, 3.5, 4.0, 4.5, 5.0, 5.5], "frequency" : [2, 4, 6, 8, 10, 12, 14, 16, 18, 20], "conductance" : 0.5e-9, "nInputs" : 50, @@ -19,7 +19,7 @@ "Ctx_1" : { "generator" : "poisson", "start" : [0.5, 1.0, 1.5, 2.0, 2.5, 3.0, 3.5, 4.0, 4.5, 5.0], - "end" : [1.0, 1.0, 1.5, 2.0, 2.5, 3.0, 3.5, 4.0, 4.5, 5.0, 5.5], + "end" : [1.0, 1.5, 2.0, 2.5, 3.0, 3.5, 4.0, 4.5, 5.0, 5.5], "frequency" : [2, 4, 6, 8, 10, 12, 14, 16, 18, 20], "conductance" : 0.5e-9, "nInputs" : 50, diff --git a/examples/parallel/KTH_PDC/lateral_inhibition/one_population/log/.empty b/examples/parallel/KTH_PDC/lateral_inhibition/one_population/log/.empty new file mode 100644 index 000000000..e69de29bb