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Main pr2 #82

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merged 53 commits into from
Jul 6, 2024
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2251c32
test commit
kjsato Jun 13, 2024
a9f4411
Merge pull request #54 from kjsato/main-v3-3
kjsato Jun 13, 2024
2b33cee
Upload new files to RSV data repo by kjsato in #54
github-actions[bot] Jun 13, 2024
d579283
test commit
kjsato Jun 13, 2024
dc3bdb7
Merge pull request #55 from kjsato/main-v3-3
kjsato Jun 13, 2024
a0433bd
Upload new files to RSV data repo by kjsato in #55
github-actions[bot] Jun 13, 2024
e3d7692
Download truth data file from RSV repo
github-actions[bot] Jun 14, 2024
b20da26
test commit
kjsato Jun 14, 2024
de97e52
Merge pull request #56 from kjsato/main-v3-3
kjsato Jun 14, 2024
ee8bdad
Upload new files to RSV data repo by kjsato in #56
github-actions[bot] Jun 14, 2024
8344914
test commit
kjsato Jun 14, 2024
3e05a39
Merge pull request #57 from kjsato/main-v3-3
kjsato Jun 14, 2024
ce0b80b
Upload new files to RSV data repo by kjsato in #57
github-actions[bot] Jun 14, 2024
081a580
test commit
kjsato Jun 14, 2024
fd919f9
Merge pull request #58 from kjsato/main-v3-3
kjsato Jun 14, 2024
50be61f
Upload new files to RSV data repo by kjsato in #58
github-actions[bot] Jun 14, 2024
fb921f3
test commit
kjsato Jun 14, 2024
f98071f
Merge pull request #59 from kjsato/main-v3-3
kjsato Jun 14, 2024
836f431
Upload new files to RSV data repo by kjsato in #59
github-actions[bot] Jun 14, 2024
fb9987d
test commit
kjsato Jun 14, 2024
a93b04f
Merge pull request #60 from kjsato/main-v3-3
kjsato Jun 14, 2024
9e70e94
Upload new files to RSV data repo by kjsato in #60
github-actions[bot] Jun 14, 2024
e640269
test commit on multiple files
kjsato Jun 14, 2024
4f915cd
test commit (file replacement)
kjsato Jun 14, 2024
68d6c84
Merge pull request #61 from kjsato/main-v3-3
kjsato Jun 14, 2024
11cbc80
Upload new files to RSV data repo by kjsato in #61
github-actions[bot] Jun 14, 2024
98b2b48
Revert "test commit on multiple files"
kjsato Jun 14, 2024
7e25809
Merge pull request #62 from kjsato/revert-61-main-v3-3
kjsato Jun 14, 2024
3a2be29
Revert "Revert "test commit on multiple files""
kjsato Jun 14, 2024
a37117e
Merge pull request #63 from kjsato/revert-62-revert-61-main-v3-3
kjsato Jun 14, 2024
835f277
test commit
kjsato Jun 14, 2024
9fc5a8a
test commit
kjsato Jun 14, 2024
681e895
Merge pull request #65 from kjsato/main-v3-3
kjsato Jun 14, 2024
06c3d1a
Upload new files to RSV data repo by kjsato in #65
github-actions[bot] Jun 14, 2024
c39c893
multiple test
kjsato Jun 15, 2024
eb6c20e
Merge pull request #66 from kjsato/main-v3-3
kjsato Jun 15, 2024
c2c150b
Upload new files to RSV data repo by kjsato in #66
github-actions[bot] Jun 15, 2024
302bcf2
Download truth data file from RSV repo
github-actions[bot] Jun 21, 2024
ae9a1a4
Download truth data file from RSV repo
github-actions[bot] Jun 28, 2024
4519734
test on CEPH
kjsato Jul 2, 2024
063ee24
hubData intro part was changed to be ahead of hubAdmin
kjsato Jul 2, 2024
a71e2d8
modified hubdata installation to direct hubverse-org and deleted 'never'
kjsato Jul 2, 2024
66675ff
delete branch info on installing hubData
kjsato Jul 2, 2024
081469e
modified submission_due end to 283 (+31) in tasks.json
kjsato Jul 2, 2024
891754f
modified validate-submission.yaml back to include custom hubData
kjsato Jul 3, 2024
8a9737e
Merge pull request #67 from kjsato/paulocv-main
kjsato Jul 3, 2024
b517f9b
Upload new files to RSV data repo by kjsato in #67
github-actions[bot] Jul 3, 2024
79c8a74
Download truth data file from RSV repo
github-actions[bot] Jul 5, 2024
a0a94b4
modified the target repo to my test repo
kjsato Jul 5, 2024
20b5267
Merge branch 'main' of github.com:kjsato/rsv-forecast-hub
kjsato Jul 5, 2024
104e0d7
modified to production
kjsato Jul 6, 2024
1127d85
deleted files for test
kjsato Jul 6, 2024
e55e983
Merge branch 'main' into main-pr2
kjsato Jul 6, 2024
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2 changes: 1 addition & 1 deletion .github/workflows/copy_data.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -15,8 +15,8 @@ jobs:
- name: Checkout and push to another repository
uses: actions/checkout@v2
with:
#repository: kjsato/rsv-forecast-hub_data
repository: HopkinsIDD/rsv-forecast-hub_data
#repository: kjsato/rsv-forecast-hub_data
token: ${{ secrets.KJ3_PATC }}
path: ./rsv-forecast-hub_data
fetch-depth: 2
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/copy_hub-config.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -21,8 +21,8 @@ jobs:
- name: Checkout target repo
uses: actions/checkout@v2
with:
#repository: kjsato/rsv-forecast-hub_data
repository: HopkinsIDD/rsv-forecast-hub_data
#repository: kjsato/rsv-forecast-hub_data
token: ${{ secrets.KJ3_PATC }}
path: ./rsv-forecast-hub_data
fetch-depth: 2
Expand Down
12 changes: 12 additions & 0 deletions .github/workflows/validate-submission.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -33,6 +33,18 @@ jobs:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-r-${{ hashFiles('DESCRIPTION') }}
restore-keys: ${{ runner.os }}-r-

- name: Install hubUtils from specific branch
run: |
Rscript -e 'install.packages("remotes")'
Rscript -e 'remotes::install_github("kjsato/hubUtils@enhancement/v3-utils", upgrade = "never")'
- name: Install hubData from specific branch
run: |
Rscript -e 'remotes::install_github("kjsato/hubData@feature/handle-samples", upgrade = "never")'
- name: Install hubAdmin from specific branch
run: |
Rscript -e 'remotes::install_github("kjsato/hubAdmin@feature/sample-support", upgrade = "never")'

- name: Install HubValidations
run: |
install.packages("remotes")
Expand Down
2 changes: 1 addition & 1 deletion hub-config/tasks.json
Original file line number Diff line number Diff line change
Expand Up @@ -271,7 +271,7 @@
"submissions_due": {
"relative_to": "origin_date",
"start": -6,
"end": 100
"end": 283
}
}
]
Expand Down
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