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how to install sctools #80

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zhq90 opened this issue Aug 26, 2020 · 1 comment
Open

how to install sctools #80

zhq90 opened this issue Aug 26, 2020 · 1 comment

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@zhq90
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zhq90 commented Aug 26, 2020

The README file of sctools did not provide any installation proceduce to install the tool. The python pypi sctools only have old 0.1.6 version of sctools. Would you show how to install the lastest version sctools in linux computer?

@khajoue2
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We moved all of the python tools to C++. You can follow the Dockerfile instructions to manually install all required libraries in your linux machine and then compile the code in fastqprocessing directory and use the binary files. Here we have some examples of the programs we use to compute different metrics wrapped in wdl: https://github.com/broadinstitute/warp/blob/develop/tasks/skylab/Metrics.wdl

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