Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Feature parpe to pypesto history #353

Draft
wants to merge 16 commits into
base: develop
Choose a base branch
from
Draft

Feature parpe to pypesto history #353

wants to merge 16 commits into from

Conversation

PaulJonasJost
Copy link
Contributor

fixes #349

dweindl and others added 9 commits June 28, 2021 09:20
@dweindl
SuperMUC build script: skip boost
7f569a9
@dweindl
Fix race condition with parallel HDF5 calls (#345)
eb33a10 
* Fix race condition with parallel HDF5 calls

Add some locks, in particular for H5Location::nameExists.
Also remove some unnecessary H5File::getId calls.

* Safely close HDF5 files

* Check pthread_create retval

* cleanup
@dweindl
Fix HDF5 generation for state reinitialization with estimated initial…
72f29d9 
… conditions (#344)
@dweindl
Cleanup PEtab import (#346)
46589e5
@dweindl
Update AMICI to develop@8ef53c88 (#347)
e5e4fb3 
git subrepo clone --branch=develop --force [email protected]:AMICI-dev/AMICI.git deps/AMICI 

subrepo:
  subdir:   "deps/AMICI"
  merged:   "8ef53c88"
upstream:
  origin:   "[email protected]:AMICI-dev/AMICI.git"
  branch:   "develop"
  commit:   "8ef53c88"
git-subrepo:
  version:  "0.4.1"
  origin:   "https://github.com/ingydotnet/git-subrepo"
  commit:   "a04d8c2"
@dweindl
Fixup AMICI
98a0746 
AMICI-dev/AMICI#1522
@PaulJonasJost
Merge remote-tracking branch 'origin/develop' into develop
2d1220e 
# Conflicts:
#	deps/AMICI/.gitrepo
#	deps/AMICI/python/amici/__init__.py
@PaulJonasJost
added parPE to pyPESTO optimization + history converter.
38589b2
@PaulJonasJost
updated to pep8 standard
614fc05
@dweindl dweindl linked an issue Jul 13, 2021 that may be closed by this pull request
Converting result files to pypesto format #349
Open
@sonarcloud
Copy link

sonarcloud bot commented Jul 13, 2021

SonarCloud Quality Gate failed.

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 1 Code Smell

0.0% 0.0% Coverage
0.0% 0.0% Duplication

@dweindl dweindl marked this pull request as draft October 4, 2021 10:46
@sonarcloud
Copy link

sonarcloud bot commented Oct 4, 2021

Please retry analysis of this Pull-Request directly on SonarCloud.

@dweindl dweindl removed their request for review May 20, 2022 15:51
@sonarcloud
Copy link

sonarcloud bot commented Sep 9, 2022

SonarCloud Quality Gate failed.    Quality Gate failed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 0 Code Smells

0.0% 0.0% Coverage
0.0% 0.0% Duplication

@dweindl dweindl force-pushed the develop branch 2 times, most recently from bbf24f8 to e4fb08a Compare March 28, 2023 07:25
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Reviewers
No reviews
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging this pull request may close these issues.

Converting result files to pypesto format
2 participants
@PaulJonasJost @dweindl