release-please.yml

name: Release

on:
  push:
    branches:
      - master

jobs:
  release-please:
    runs-on: ubuntu-latest
    env:
      GISAID_API_TOKEN: ${{ secrets.GISAID_API_TOKEN }}
    steps:
      - uses: google-github-actions/release-please-action@v4
        id: release
        with:
          release-type: simple
          token: ${{ secrets.GITHUB_TOKEN }}

      - name: Install jq
        run: sudo apt-get install -y jq

      - name: Check if PR is created
        id: pr_created
        run: |
          export PRNUMBER=$( echo '${{ steps.release.outputs.pr }}' | jq -r '.number' )
          if [ "$PRNUMBER" -eq "$PRNUMBER" ] 2>/dev/null; then
            echo "::set-output name=pr::$(echo true)"
            echo "::set-output name=number::$(echo $PRNUMBER)"
          else
            [ -n "$PRNUMBER" ] && echo "::set-output name=pr::$(echo false)" && exit 0
            echo "::set-output name=pr::$(echo false)"
          fi

      - name: PR exists debug print
        run: |
          echo ${{ steps.pr_created.outputs.pr }}

      - name: Release debug print
        run: |
          echo ${{ steps.release.outputs.release_created }}

      - name: PR If debug print
        run: |
          echo ${{ steps.pr_created.outputs.pr == 'true' }}

      - name: Release If debug print
        run: |
          echo ${{ steps.release.outputs.release_created == 'true' }}

      - name: Both debug print
        run: |
          echo ${{ steps.pr_created.outputs.pr == 'true' && steps.release.outputs.release_created != 'true' }}

      - name: Space
        run: |
          echo "Free space:"
          df -h

      - name: Maximize build space for container image
        if: ${{ steps.release.outputs.release_created == 'true' }}
        uses: easimon/maximize-build-space@master
        with:
          root-reserve-mb: 512
          swap-size-mb: 1024
          remove-dotnet: "true"
          remove-haskell: "true"
          remove-android: "true"

      - name: Checkout
        uses: actions/checkout@v4

      - name: Space
        run: |
          echo "Free space:"
          df -h

      - uses: actions/checkout@v4

      - name: Checkout release PR locally
        if: ${{ steps.pr_created.outputs.pr == 'true' && steps.release.outputs.release_created != 'true' }}
        run: |
          git config user.name github-actions[bot]
          git config user.email github-actions[bot]@users.noreply.github.com
          git fetch origin
          git pull origin pull/${{ steps.pr_created.outputs.number }}/head

      - name: Export version as environment variable
        if: ${{ steps.pr_created.outputs.pr == 'true' || steps.release.outputs.release_created != 'true' }}
        run: |
          echo "VERSION=$(cat version.txt)" >> $GITHUB_ENV
          echo "Version: ${{ env.VERSION }}"
          echo ${{ steps.release.outputs.tag_name }}

      - name: Switch to release PR on origin
        if: ${{ steps.pr_created.outputs.pr == 'true' && steps.release.outputs.release_created != 'true' }}
        run: |
          git checkout release-please--branches--master

      - name: Change containerized tag
        if: ${{ steps.pr_created.outputs.pr == 'true' && steps.release.outputs.release_created != 'true' }}
        run: |
          sed -i "/containerized/c\containerized: \"quay.io/uncovar/uncovar#${{ env.VERSION }}\"" workflow/Snakefile

      - name: Push changed containerized tag
        if: ${{ steps.pr_created.outputs.pr == 'true' && steps.release.outputs.release_created != 'true' }}
        run: |
          git add workflow/Snakefile
          git commit -m "Changed containerized tag to ${{ env.VERSION }}"
          git push

      - name: Create Dockerfile
        if: ${{ steps.release.outputs.release_created == 'true' }}
        uses: snakemake/snakemake-github-action@v1.25.1
        with:
          directory: .
          snakefile: workflow/Snakefile
          task: "containerize"

      - name: Debug print
        run: |
          pwd
          ls -alh

      - name: Set up QEMU
        if: ${{ steps.release.outputs.release_created == 'true' }}
        uses: docker/setup-qemu-action@v3

      - name: Set up Docker Buildx
        if: ${{ steps.release.outputs.release_created == 'true' }}
        uses: docker/setup-buildx-action@v3

      - name: Login to Quay Registry
        if: ${{ steps.release.outputs.release_created == 'true' }}
        uses: docker/login-action@v3
        with:
          registry: quay.io
          username: uncovar+robot
          password: ${{ secrets.QUAYIO_PASSWORD }}

      - name: Build and push
        if: ${{ steps.release.outputs.release_created == 'true' }}
        uses: docker/build-push-action@v5
        with:
          context: .
          push: true
          tags: |
            quay.io/uncovar/uncovar:latest
            quay.io/uncovar/uncovar:${{ env.VERSION }}
            quay.io/uncovar/uncovar:${{ github.sha }}