clip ont primers properly (#644)

IKIM-Essen · Apr 17, 2024 · 762cbb9 · 762cbb9
1 parent 38d5144
commit 762cbb9
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflow/rules/long_read.smk b/workflow/rules/long_read.smk
@@ -133,7 +133,7 @@ rule clip_adbc_corrected:
     conda:
         "../envs/notramp.yaml"
     shell:
-        "notramp -t --incl_prim -r {input.reads} -p {input.primer} -g {input.ref_genome} -o {params.outdir}  2> {log}"
+        "notramp -t -r {input.reads} -p {input.primer} -g {input.ref_genome} -o {params.outdir}  2> {log}"
 
 
 rule bcftools_consensus_ont: