fix: changed kraken input files for ont (#650)

* Changed kraken input files for ont * Formatting --------- Co-authored-by: Alexander Thomas <[email protected]>
IKIM-Essen · Jun 6, 2024 · b62007c · b62007c
1 parent 2bf92c2
commit b62007c
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflow/rules/qc.smk b/workflow/rules/qc.smk
@@ -153,7 +153,7 @@ rule species_diversity_before_pe:
 rule species_diversity_before_se:
     input:
         db="resources/minikraken-8GB",
-        reads=get_trimmed_reads,
+        reads="results/{date}/corrected/{sample}/{sample}.correctedReads.fasta.gz",
     output:
         kraken_output=temp(
             "results/{date}/species-diversity/se/{sample}/{sample}.kraken"