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fix (#625)
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Co-authored-by: vBassewitz <[email protected]>
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alethomas and vBassewitz authored Jan 30, 2024
1 parent e6476b6 commit e3f4097
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion workflow/rules/common.smk
Original file line number Diff line number Diff line change
Expand Up @@ -1329,7 +1329,7 @@ def get_trimmed_reads(wildcards):
"results/{{{{date}}}}/trimmed/fastp-pe/{{sample}}.{read}.fastq.gz",
read=[1, 2],
),
ont_pattern="results/{{date}}/corrected/{sample}/{sample}.correctedReads.fasta",
ont_pattern="results/{{date}}/corrected/{sample}/{sample}.correctedReads.fasta.gz",
ion_torrent_pattern="results/{{date}}/trimmed/fastp-se/{sample}.fastq.gz",
)

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