Merge pull request #54 from IMMM-SFA/joss-review

fix bibtext references
IMMM-SFA · Jun 17, 2021 · ea18eb3 · ea18eb3
2 parents f7885fc + 1423e47
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diff --git a/README.md b/README.md
@@ -1,4 +1,8 @@
-[![linux](https://github.com/IMMM-SFA/mosartwmpy/actions/workflows/build_linux.yml/badge.svg)](https://github.com/IMMM-SFA/mosartwmpy/actions/workflows/build_linux.yml) [![osx](https://github.com/IMMM-SFA/mosartwmpy/actions/workflows/build_osx.yml/badge.svg)](https://github.com/IMMM-SFA/mosartwmpy/actions/workflows/build_osx.yml) [![windows](https://github.com/IMMM-SFA/mosartwmpy/actions/workflows/build_windows.yml/badge.svg)](https://github.com/IMMM-SFA/mosartwmpy/actions/workflows/build_windows.yml) [![codecov](https://codecov.io/gh/IMMM-SFA/mosartwmpy/branch/main/graph/badge.svg?token=IPOY8984MB)](https://codecov.io/gh/IMMM-SFA/mosartwmpy)
+[![linux](https://github.com/IMMM-SFA/mosartwmpy/actions/workflows/build_linux.yml/badge.svg)](https://github.com/IMMM-SFA/mosartwmpy/actions/workflows/build_linux.yml)
+[![osx](https://github.com/IMMM-SFA/mosartwmpy/actions/workflows/build_osx.yml/badge.svg)](https://github.com/IMMM-SFA/mosartwmpy/actions/workflows/build_osx.yml)
+[![windows](https://github.com/IMMM-SFA/mosartwmpy/actions/workflows/build_windows.yml/badge.svg)](https://github.com/IMMM-SFA/mosartwmpy/actions/workflows/build_windows.yml)
+[![codecov](https://codecov.io/gh/IMMM-SFA/mosartwmpy/branch/main/graph/badge.svg?token=IPOY8984MB)](https://codecov.io/gh/IMMM-SFA/mosartwmpy)
+[![DOI](https://zenodo.org/badge/312114600.svg)](https://zenodo.org/badge/latestdoi/312114600)
 
 ## mosartwmpy
 

diff --git a/paper/paper.bib b/paper/paper.bib
@@ -1,5 +1,5 @@
 @article{voisin2013improved,
-  title={On an improved sub-regional water resources management representation for integration into earth system models.},
+  title={On an improved sub-regional water resources management representation for integration into {Earth} system models.},
   author={Voisin, Nathalie and Li, Hongyi and Ward, D and Huang, Maoyi and Wigmosta, M and Leung, LR},
   journal={Hydrology \& Earth System Sciences},
   volume={17},
@@ -10,7 +10,7 @@ @article{voisin2013improved
 }
 
 @article{li2013physically,
-  title = {A physically based runoff routing model for land surface and earth system models},
+  title = {A physically based runoff routing model for land surface and {Earth} system models},
   author = {Li, Hongyi and Wigmosta, Mark S and Wu, Huan and Huang, Maoyi and Ke, Yinghai and Coleman, Andr{\'e} M and Leung, L Ruby},
   journal = {Journal of Hydrometeorology},
   volume = {14},
@@ -22,7 +22,7 @@ @article{li2013physically
 }
 
 @misc{doecode_10475,
-  title = {Energy Exascale Earth System Model v1.0},
+  title = {{Energy Exascale Earth System Model v1.0}},
   author = {E3SM Project, DOE},
   url = {https://doi.org/10.11578/E3SM/dc.20180418.36},
   doi = {10.11578/E3SM/dc.20180418.36},
@@ -41,7 +41,7 @@ @misc{statemod
 }
 
 @article{hoch2017glofrim,
-  title={GLOFRIM v1. 0--A globally applicable computational framework for integrated hydrological--hydrodynamic modelling},
+  title={GLOFRIM v1.0--A globally applicable computational framework for integrated hydrological--hydrodynamic modelling},
   author={Hoch, Jannis M and Neal, Jeffrey C and Baart, Fedor and Beek, Rens van and Winsemius, Hessel C and Bates, Paul D and Bierkens, Marc FP},
   journal={Geoscientific Model Development},
   volume={10},
@@ -52,7 +52,7 @@ @article{hoch2017glofrim
 }
 
 @misc{modflow,
-  title = {MODFLOW 6 Modular Hydrologic Model version 6.2.1},
+  title = {{MODFLOW 6 Modular Hydrologic Model version 6.2.1}},
   author = {Langevin, C.D., Hughes, J.D., Banta, E.R., Provost, A.M., Niswonger, R.G., and Panday, Sorab},
   url = {https://doi.org/10.5066/F76Q1VQV},
   doi = {10.5066/F76Q1VQV},
@@ -82,7 +82,7 @@ @article{hutton2020basic
   number = {51},
   pages = {2317},
   author = {Eric W.H. Hutton and Mark D. Piper and Gregory E. Tucker},
-  title = {The Basic Model Interface 2.0: A standard interface for coupling numerical models in the geosciences},
+  title = {{The Basic Model Interface 2.0}: A standard interface for coupling numerical models in the geosciences},
   journal = {Journal of Open Source Software}
 }
 
@@ -104,6 +104,7 @@ @article{https://doi.org/10.1029/2020WR027902
 
  @misc{octoverse_2020,
   url = {https://octoverse.github.com/},
+  author = {GitHub, Inc.},
   journal = {The State of the Octoverse},
   publisher = {GitHub},
   year = {2020},
@@ -123,7 +124,7 @@ @article{abm
 
 @article {Yoone2020431118,
 	author = {Yoon, Jim and Klassert, Christian and Selby, Philip and Lachaut, Thibaut and Knox, Stephen and Avisse, Nicolas and Harou, Julien and Tilmant, Amaury and Klauer, Bernd and Mustafa, Daanish and Sigel, Katja and Talozi, Samer and Gawel, Erik and Medell{\'\i}n-Azuara, Josue and Bataineh, Bushra and Zhang, Hua and Gorelick, Steven M.},
-	title = {A coupled human{\textendash}natural system analysis of freshwater security under climate and population change},
+	title = {A coupled human-natural system analysis of freshwater security under climate and population change},
 	volume = {118},
 	number = {14},
 	elocation-id = {e2020431118},
@@ -142,7 +143,7 @@ @article{reservoirs
   year = {2020},
   month = {03},
   pages = {1275-1291},
-  title = {Inferred inflow forecast horizons guiding reservoir release decisions across the United States},
+  title = {Inferred inflow forecast horizons guiding reservoir release decisions across the {United States}},
   volume = {24},
   journal = {Hydrology and Earth System Sciences},
   doi = {10.5194/hess-24-1275-2020}
@@ -162,13 +163,13 @@ @Article{hess-19-3239-2015
 
 @article{https://doi.org/10.1029/2018MS001583,
   author = {Lawrence, David M. and Fisher, Rosie A. and Koven, Charles D. and Oleson, Keith W. and Swenson, Sean C. and Bonan, Gordon and Collier, Nathan and Ghimire, Bardan and van Kampenhout, Leo and Kennedy, Daniel and Kluzek, Erik and Lawrence, Peter J. and Li, Fang and Li, Hongyi and Lombardozzi, Danica and Riley, William J. and Sacks, William J. and Shi, Mingjie and Vertenstein, Mariana and Wieder, William R. and Xu, Chonggang and Ali, Ashehad A. and Badger, Andrew M. and Bisht, Gautam and van den Broeke, Michiel and Brunke, Michael A. and Burns, Sean P. and Buzan, Jonathan and Clark, Martyn and Craig, Anthony and Dahlin, Kyla and Drewniak, Beth and Fisher, Joshua B. and Flanner, Mark and Fox, Andrew M. and Gentine, Pierre and Hoffman, Forrest and Keppel-Aleks, Gretchen and Knox, Ryan and Kumar, Sanjiv and Lenaerts, Jan and Leung, L. Ruby and Lipscomb, William H. and Lu, Yaqiong and Pandey, Ashutosh and Pelletier, Jon D. and Perket, Justin and Randerson, James T. and Ricciuto, Daniel M. and Sanderson, Benjamin M. and Slater, Andrew and Subin, Zachary M. and Tang, Jinyun and Thomas, R. Quinn and Val Martin, Maria and Zeng, Xubin},
-  title = {The Community Land Model Version 5: Description of New Features, Benchmarking, and Impact of Forcing Uncertainty},
+  title = {{The Community Land Model Version 5}: Description of New Features, Benchmarking, and Impact of Forcing Uncertainty},
   journal = {Journal of Advances in Modeling Earth Systems},
   volume = {11},
   number = {12},
   pages = {4245-4287},
   keywords = {global land model, Earth System Modeling, carbon and nitrogen cycling, hydrology, benchmarking},
-  doi = {https://doi.org/10.1029/2018MS001583},
+  doi = {10.1029/2018MS001583},
   url = {https://agupubs.onlinelibrary.wiley.com/doi/abs/10.1029/2018MS001583},
   eprint = {https://agupubs.onlinelibrary.wiley.com/doi/pdf/10.1029/2018MS001583},
   abstract = {Abstract The Community Land Model (CLM) is the land component of the Community Earth System Model (CESM) and is used in several global and regional modeling systems. In this paper, we introduce model developments included in CLM version 5 (CLM5), which is the default land component for CESM2. We assess an ensemble of simulations, including prescribed and prognostic vegetation state, multiple forcing data sets, and CLM4, CLM4.5, and CLM5, against a range of metrics including from the International Land Model Benchmarking (ILAMBv2) package. CLM5 includes new and updated processes and parameterizations: (1) dynamic land units, (2) updated parameterizations and structure for hydrology and snow (spatially explicit soil depth, dry surface layer, revised groundwater scheme, revised canopy interception and canopy snow processes, updated fresh snow density, simple firn model, and Model for Scale Adaptive River Transport), (3) plant hydraulics and hydraulic redistribution, (4) revised nitrogen cycling (flexible leaf stoichiometry, leaf N optimization for photosynthesis, and carbon costs for plant nitrogen uptake), (5) global crop model with six crop types and time-evolving irrigated areas and fertilization rates, (6) updated urban building energy, (7) carbon isotopes, and (8) updated stomatal physiology. New optional features include demographically structured dynamic vegetation model (Functionally Assembled Terrestrial Ecosystem Simulator), ozone damage to plants, and fire trace gas emissions coupling to the atmosphere. Conclusive establishment of improvement or degradation of individual variables or metrics is challenged by forcing uncertainty, parametric uncertainty, and model structural complexity, but the multivariate metrics presented here suggest a general broad improvement from CLM4 to CLM5.},

diff --git a/setup.py b/setup.py
@@ -9,7 +9,7 @@ def readme():
 
 setup(
     name='mosartwmpy',
-    version='0.0.7',
+    version='0.0.8',
     packages=find_packages(),
     url='https://github.com/IMMM-SFA/mosartwmpy',
     license='BSD2-Simplified',