hymod editshymod editshymod edits

docs/source/A2.4_hymod.rst

@@ -34,22 +34,29 @@ The tutorial includes the following steps:
 1. Introduction to HYMOD
 ^^^^^^^^^^^^^^^^^^^^^^^^
 
-`1.1 - Introduction to a simple hydrologic model (HYMOD) <#hymod>`__
-`1.2 - Input Data <#inputs>`__ `1.3 - Running a basic
-simulation <#baseline>`__ `1.4 - Model outputs <#outputs>`__
+`1.1 - Introduction to a simple hydrologic model (HYMOD) <#hymod>`
+
+`1.2 - Input Data <#inputs>`
+
+`1.3 - Running a basic simulation <#baseline>`
+
+`1.4 - Model outputs <#outputs>`
 
 2. Global Sensitivity Analysis
 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
 
-`2.1 - Design of Experiments <#sensitivity>`__ `2.2 - Sensitivity
-analysis for one output <#sa_metrics>`__ `2.3 - Sensitivity analysis
-across multiple outputs <#diff_performance>`__ `2.4 - Time-varying
-sensitivity analysis <#TVSA>`__
+`2.1 - Design of Experiments <#sensitivity>`
+
+`2.2 - Sensitivity analysis for one output <#sa_metrics>`
+
+`2.3 - Sensitivity analysis across multiple outputs <#diff_performance>`
+
+`2.4 - Time-varying sensitivity analysis <#TVSA>`
 
 1 - Introduction to HYMOD
 =========================
 
-# 1.1- Overview
+1.1 Overview
 
 HYMOD is a hydrologic model (rainfall-runoff model) that simulates key
 hydrologic fluxes such as infiltration, streamflow and
@@ -95,10 +102,7 @@ Kq values of all three linear reservoirs are the same)
 
 :math:`K_s`: Slow flow residence time of linear infinite reservoir
 
-.. figure:: ./figs/hymod_schematic-DAVE.png
-   :alt: Title
-
-   alt text
+.. image:: _statichymod_schematic-DAVE.png
 
 Vertical Processes
 ~~~~~~~~~~~~~~~~~~
@@ -108,9 +112,9 @@ HYMOD models the fraction of water that is stored in the soil
 
 .. math:: F(XH_{uz}) = 1 - (1 - \frac{XH_{uz}}{H_{uz}})^{B}
 
-where *:math:`XH_{uz}`* is the water storage capacity of the soil;
-**:math:`H_{uz}`** is the parameter describing basin maximum water
-storage capacity (mm); and **:math:`B`** is the parameter describing the
+where :math:`XH_{uz}` is the water storage capacity of the soil;
+:math:`H_{uz}` is the parameter describing basin maximum water
+storage capacity (mm); and :math:`B` is the parameter describing the
 degree of spatial variability within the basin.
 
 The portion of precipitation that exceeds the water storage capacity is
@@ -135,7 +139,7 @@ H. V., & Sorooshian, S. (2001). A framework for development and
 application of hydrological models. Hydrology and Earth System Sciences,
 5(1), 13-26.
 
-### 1.2 Input data
+1.2 Input data
 
 The HYMOD model only requires precipitation and potential
 evapotranspiration as inputs. For this example, we’ll run HYMOD using
@@ -308,7 +312,7 @@ while rainfall labels are shown on the right y-axis.
 .. image:: _static/hymod1.png
 
 
-### 1.3 Running a Baseline Model Simulation
+1.3 Running a Baseline Model Simulation
 
 We’ll start our experiment by running HYMOD using its default
 parameters.
@@ -395,7 +399,7 @@ observed streamflow and the LOG(RMSE) is fairly low.
 2- Global Sensitivity Analysis
 ==============================
 
-## 2.1- Experimental Design and Setup
+2.1 Experimental Design and Setup
 
 Now we’ll examine how sensitive streamflow simulations generated by
 HYMOD are to the model’s input parameters. We’ll perform global
@@ -583,7 +587,7 @@ observed streamflow.
 
 
 
-### 2.2 - Sensitivity of streamflows to model parameters
+2.2 Sensitivity of streamflows to model parameters
 
 Now we’ll examine how each of HYMOD’s parameters impact the variance of
 simulated streamflows. Using SALib we’ll calculate the first order and
@@ -909,7 +913,7 @@ interaction between Alp and Ks.
 
 
 
-## 2.4 Time-Varying Sensitivity Analysis
+2.4 Time-Varying Sensitivity Analysis
 
 In section 2.5 we saw how performing sensitivity analysis on different
 measurements of model output can yeild in different results on the