Merge pull request #77 from INCATools/automate-implementer-list

Automate updating of implementer list in README.md

Author: hrshdhgd

.github/workflows/update-readme.yml

@@ -0,0 +1,46 @@
+name: Update README
+
+on:
+  # Trigger the workflow on push to specific branches, or manually or on a schedule
+  push:
+    branches:
+      - main
+  workflow_dispatch:
+  schedule:
+    # Schedule the workflow to run every day at midnight (optional)
+    - cron: '0 0 * * *'
+
+jobs:
+  update-readme:
+    runs-on: ubuntu-latest
+
+    steps:
+    - name: Checkout repository
+      uses: actions/checkout@v3
+      with:
+        fetch-depth: 0 # Fetch all history for .GitInfo and .Lastmod
+      
+    - name: Set up Python
+      uses: actions/setup-python@v4
+      with:
+        python-version: '3.x' # Install the latest version of Python 3.x
+
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install .
+
+    - name: Update README
+      env:
+        GH_TOKEN: ${{ secrets.GH_TOKEN }}
+      run: ochange update-readme $GH_TOKEN
+
+    - name: Create Pull Request
+      uses: peter-evans/create-pull-request@v4
+      with:
+        token: ${{ secrets.GH_TOKEN }}
+        commit-message: "Update README with ontobot-change-agent resources"
+        title: "Automated README update by ontobot-change-agent"
+        body: "This is an automated update of the README file with the latest ontology resources."
+        branch: "ontobot-readme-update-${{ github.run_number }}"
+        labels: "automated pr"

README.md

@@ -10,38 +10,17 @@ Update ontologies using change language.
 
 [Read the docs](https://hrshdhgd.github.io/ontobot-change-agent/index.html)
 
-Ontology resources that are powered by `ontobot-change-agent`:
- - Via [`oaklib`](https://github.com/INCATools/ontology-access-kit)
-   - [MONDO](https://github.com/monarch-initiative/mondo/blob/master/.github/workflows/ontobot.yaml)
-   - [GO](https://github.com/geneontology/go-ontology/blob/master/.github/workflows/new_pr.yml)
-   - [UBERON](https://github.com/obophenotype/uberon/blob/master/.github/workflows/auto-pr-ontobot.yml)
-   - [PATO](https://github.com/pato-ontology/pato/blob/master/.github/workflows/onotobot.yml)
- - Via [`kgcl-java`](https://github.com/gouttegd/kgcl-java)
-   - [ENVO](https://github.com/hrshdhgd/envo/blob/master/.github/workflows/ontobot.yml)
-   - [CL](https://github.com/obophenotype/cell-ontology/blob/master/.github/workflows/ontobot.yml)
-<!-- ## Installation -->
-
-<!-- Uncomment this section after first release
-The most recent release can be installed from
-[PyPI](https://pypi.org/project/ontobot_change_agent/) with:
-
-```bash
-$ pip install ontobot-change-agent
-```
--->
-
-<!-- The most recent code and data can be installed directly from GitHub with:
-
-```bash
-$ pip install git+https://github.com/hrshdhgd/ontobot-change-agent.git
-``` -->
-
-<!-- ## Contributing
-
-Contributions, whether filing an issue, making a pull request, or forking, are appreciated. See
-[CONTRIBUTING.md](https://github.com/hrshdhgd/ontobot-change-agent/blob/master/.github/CONTRIBUTING.md) for more information on getting involved. -->
-
+<!-- IMPLEMENTERS_START -->
 
+Ontology resources that are powered by `ontobot-change-agent`:
+ - [geneontology/go-ontology](https://github.com/geneontology/go-ontology/blob/6fbedcc5650a7a5363123d04ace38413434d709f/.github/workflows/new_pr.yml)
+ - [monarch-initiative/mondo](https://github.com/monarch-initiative/mondo/blob/ede6a34907480f18353539fd3df9be31d9f01cdf/.github/workflows/ontobot.yaml)
+ - [obophenotype/uberon](https://github.com/obophenotype/uberon/blob/e0ca62d37dfb665d5ef8f4a0c7014ae20af28531/.github/workflows/auto-pr-ontobot.yml)
+ - [EnvironmentOntology/envo](https://github.com/EnvironmentOntology/envo/blob/cf0db392bc566c68cfafaa3a8e32ad218f216a8e/.github/workflows/ontobot.yml)
+ - [obophenotype/cell-ontology](https://github.com/obophenotype/cell-ontology/blob/2180772b156cf79797b04cc494efc8185088428c/.github/workflows/ontobot.yml)
+ - [pato-ontology/pato](https://github.com/pato-ontology/pato/blob/f5573b017aba14714af17da975834b095000d99a/.github/workflows/onotobot.yml)
+
+<!-- IMPLEMENTERS_END -->
 
 ### License