DESCRIPTION

Package: Esearch3D
Type: Package
Title: Leveraging gene expression and chromatin architecture to predict
        intergenic enhancers
Version: 0.4.0
Author: Maninder Heer *, Luca Giudice * et al. 
Maintainer: Maninder Heer <maninder-heer@hotmail.co.uk> Claudia Mengoni <claudia.mengoni@univr.it>
Description: Software that leverages gene expression and 3C data to predict intergenic enhancers and includes a graphic user interface to visualisation of the network with imputed activity scores
License: MIT + file LICENSE
Encoding: UTF-8
LazyData: true
VignetteBuilder: knitr
Depends: R (>= 3.6.1),biomaRt (>= 2.0.0),plyr (>= 1.8.6),dplyr (>=
        1.0.0),DT,fields (>= 11.0),spam (>= 2.5),plotfunctions (>=
        1.0),visNetwork (>= 2.0.0),shinyjs (>=
        2.0.0),shinydashboard,shiny (>= 1.4.0),cppRouting (>=
        2.0),igraph (>= 1.0),doParallel (>= 1.0),iterators (>=
        1.0),foreach (>=
        1.5.0),grid,parallel,stats,graphics,grDevices,utils,RcppParallel
        (>= 5.0.0),Matrix (>= 1.2.0),purrr,scales (>= 1.0.0),IRanges
        (>= 2.20.0),RcppZiggurat,data.table (>= 1.14.0),Rfast (>=
        1.9.9),matrixStats (>= 0.56.0),data.table (>=
        1.14.0),plotfunctions (>= 1.0),rmarkdown,knitr,htmltools (>=
        0.5.2),BiocManager,bslib,future (>= 1.0.0),mlr3verse (>=
        0.2),mlr3tuning (>= 0.8),mlr3learners (>= 0.4),mlr3viz (>=
        0.5),DALEX (>= 2.0),DALEXtra (>= 2.0), rlang (>= 1.0.0), ranger
biocViews: IRanges (>= 2.20.0),biomaRt (>= 2.0.0)
RoxygenNote: 7.2.0
NeedsCompilation: no
Packaged: 2022-07-20 14:30:18 UTC; root