Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Genome size exceed int type #2

Open
Mozillian1 opened this issue Aug 1, 2024 · 0 comments
Open

Genome size exceed int type #2

Mozillian1 opened this issue Aug 1, 2024 · 0 comments

Comments

@Mozillian1
Copy link

Hello, I'm trying to use IGtools on the mouse genome and I got an error like:

sequence length -1571536154
java.lang.NegativeArraySizeException: -157153615
java.lang.NegativeArraySizeException: -157153615
        at igtools.common.sequence.B3LLSequence.<init>(B3LLSequence.java:39)
        at igtools.cli.util.FASTATo3bit.main(FASTATo3bit.java:33)

I believe that it was because the genome size exceeded the maximum value int type can hold.
I have read your publication 'Informational laws of genome structures.' and I found that you perform entropic analyses on mammals including mouse with large genomes. Would you kindly share your upgraded version for large genomes?
Thank you in advance.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant