Skip to content
This repository was archived by the owner on Feb 2, 2024. It is now read-only.

Commit b357dbd

Browse files
author
Ehsan Totoni
committed
move install to docs
1 parent cb9689a commit b357dbd

23 files changed

+264
-94
lines changed

‎README.rst

+1-38
Original file line numberDiff line numberDiff line change
@@ -18,41 +18,4 @@ These academic papers describe the underlying methods in HPAT:
1818
- `HPAT at HotOS'17 <http://dl.acm.org/citation.cfm?id=3103004>`_
1919
- `HiFrames on arxiv <https://arxiv.org/abs/1704.02341>`_
2020

21-
Installing HPAT
22-
===============
23-
24-
These commands install HPAT and its dependencies such as Numba, LLVM and HDF5
25-
on Ubuntu Linux::
26-
27-
$ sudo apt install llvm-4.0 make libc6-dev gcc-4.8
28-
$ # download and install Anaconda python distribution
29-
$ conda create -n HPAT
30-
$ source activate HPAT
31-
$ conda install numpy scipy pandas gcc mpich2 llvmlite
32-
$ git clone https://github.com/IntelLabs/numba.git
33-
$ cd numba
34-
$ git checkout hpat_req
35-
$ python setup.py develop
36-
$ cd ..
37-
$ # download hdf5 and cd inside
38-
$ CC=mpicc CXX=mpicxx ./configure --enable-parallel
39-
$ make; make install
40-
$ cd ..
41-
$ export HDF5_DIR=/home/user/hdf5-1.10.1/hdf5/
42-
$ export C_INCLUDE_PATH=$C_INCLUDE_PATH:$HDF5_DIR/include
43-
$ export CPLUS_INCLUDE_PATH=$CPLUS_INCLUDE_PATH:$HDF5_DIR/include
44-
$ export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$HDF5_DIR/lib
45-
$ export LIBRARY_PATH=$LIBRARY_PATH:$HDF5_DIR/lib
46-
$ git clone https://github.com/h5py/h5py.git
47-
$ cd h5py
48-
$ python setup.py configure --hdf5=$HDF5_DIR
49-
$ LDSHARED="mpicc -shared" CXX=mpicxx LD=mpicc CC="mpicc" python setup.py install
50-
$ cd ..
51-
$ git clone https://github.com/IntelLabs/hpat.git
52-
$ cd hpat
53-
$ LDSHARED="mpicxx -shared" CXX=mpicxx LD=mpicxx CC="mpicxx -std=c++11" python setup.py develop
54-
55-
Commands for running the logistic regression example::
56-
57-
$ python generate_data/gen_logistic_regression.py
58-
$ mpirun -n 2 python examples/logistic_regression.py
21+
HPAT's documentation can be found `here <https://intellabs.github.io/hpat/>`_.

‎docs/_build/doctrees/environment.pickle

1.07 KB
Binary file not shown.

‎docs/_build/doctrees/index.doctree

55 Bytes
Binary file not shown.

‎docs/_build/doctrees/source/install.doctree

5.79 KB
Binary file not shown.

‎docs/_build/doctrees/source/notsupported.doctree

145 Bytes
Binary file not shown.

‎docs/_build/doctrees/source/overview.doctree

125 Bytes
Binary file not shown.

‎docs/_build/doctrees/source/supported.doctree

417 Bytes
Binary file not shown.

‎docs/_build/html/.buildinfo

+1-1
Original file line numberDiff line numberDiff line change
@@ -1,4 +1,4 @@
11
# Sphinx build info version 1
22
# This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
3-
config: 7e92f68e7de450dabf122e0b9219a2a0
3+
config: 2ca56a9ba859c2fc39c9a2235e6870fa
44
tags: 645f666f9bcd5a90fca523b33c5a78b7

‎docs/_build/html/_sources/index.rst.txt

+1
Original file line numberDiff line numberDiff line change
@@ -13,3 +13,4 @@ HPAT documentation
1313
source/overview
1414
source/supported
1515
source/notsupported
16+
source/install

‎docs/_build/html/_sources/source/install.rst.txt

+40
Original file line numberDiff line numberDiff line change
@@ -0,0 +1,40 @@
1+
.. _install:
2+
3+
Installing HPAT
4+
===============
5+
6+
These commands install HPAT and its dependencies such as Numba, LLVM and HDF5
7+
on Ubuntu Linux::
8+
9+
$ sudo apt install llvm-4.0 make libc6-dev gcc-4.8
10+
$ # download and install Anaconda python distribution
11+
$ conda create -n HPAT
12+
$ source activate HPAT
13+
$ conda install numpy scipy pandas gcc mpich2 llvmlite
14+
$ git clone https://github.com/IntelLabs/numba.git
15+
$ cd numba
16+
$ git checkout hpat_req
17+
$ python setup.py develop
18+
$ cd ..
19+
$ # download hdf5 and cd inside
20+
$ CC=mpicc CXX=mpicxx ./configure --enable-parallel
21+
$ make; make install
22+
$ cd ..
23+
$ export HDF5_DIR=/home/user/hdf5-1.10.1/hdf5/
24+
$ export C_INCLUDE_PATH=$C_INCLUDE_PATH:$HDF5_DIR/include
25+
$ export CPLUS_INCLUDE_PATH=$CPLUS_INCLUDE_PATH:$HDF5_DIR/include
26+
$ export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:$HDF5_DIR/lib
27+
$ export LIBRARY_PATH=$LIBRARY_PATH:$HDF5_DIR/lib
28+
$ git clone https://github.com/h5py/h5py.git
29+
$ cd h5py
30+
$ python setup.py configure --hdf5=$HDF5_DIR
31+
$ LDSHARED="mpicc -shared" CXX=mpicxx LD=mpicc CC="mpicc" python setup.py install
32+
$ cd ..
33+
$ git clone https://github.com/IntelLabs/hpat.git
34+
$ cd hpat
35+
$ LDSHARED="mpicxx -shared" CXX=mpicxx LD=mpicxx CC="mpicxx -std=c++11" python setup.py develop
36+
37+
Commands for running the logistic regression example::
38+
39+
$ python generate_data/gen_logistic_regression.py
40+
$ mpirun -n 2 python examples/logistic_regression.py

‎docs/_build/html/_sources/source/notsupported.rst.txt

+3-3
Original file line numberDiff line numberDiff line change
@@ -16,9 +16,9 @@ variable should have a single type. The example below is not type stable since
1616
variable ``a`` can be both a float and an array of floats::
1717

1818
if flag:
19-
a = np.ones(10)
20-
else:
2119
a = 1.0
20+
else:
21+
a = np.ones(10)
2222

2323
The use of ``isinstance`` operator of Python often means type instabillity and
2424
is not supported.
@@ -27,7 +27,7 @@ Similarly, function calls should also be deterministic. The below example is
2727
not supported since function ``f`` is not known in advance::
2828

2929
if flag:
30-
f = np.ones
30+
f = np.zeros
3131
else:
3232
f = np.random.ranf
3333
A = f(10)

‎docs/_build/html/_static/basic.css

+7
Original file line numberDiff line numberDiff line change
@@ -398,6 +398,13 @@ table.field-list td, table.field-list th {
398398
margin: 0;
399399
}
400400

401+
.field-name {
402+
-moz-hyphens: manual;
403+
-ms-hyphens: manual;
404+
-webkit-hyphens: manual;
405+
hyphens: manual;
406+
}
407+
401408
/* -- other body styles ----------------------------------------------------- */
402409

403410
ol.arabic {

‎docs/_build/html/genindex.html

+4-7
Original file line numberDiff line numberDiff line change
@@ -1,17 +1,14 @@
11

2+
23
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
34
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
45

5-
66
<html xmlns="http://www.w3.org/1999/xhtml">
77
<head>
88
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
9-
109
<title>Index &#8212; HPAT 0.1 documentation</title>
11-
1210
<link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
1311
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
14-
1512
<script type="text/javascript">
1613
var DOCUMENTATION_OPTIONS = {
1714
URL_ROOT: './',
@@ -25,7 +22,7 @@
2522
<script type="text/javascript" src="_static/jquery.js"></script>
2623
<script type="text/javascript" src="_static/underscore.js"></script>
2724
<script type="text/javascript" src="_static/doctools.js"></script>
28-
<script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.0/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
25+
<script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
2926
<link rel="index" title="Index" href="#" />
3027
<link rel="search" title="Search" href="search.html" />
3128

@@ -35,7 +32,7 @@
3532
<meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
3633

3734
</head>
38-
<body role="document">
35+
<body>
3936

4037

4138
<div class="document">
@@ -83,7 +80,7 @@ <h3>Quick search</h3>
8380
&copy;2017, Ehsan Totoni.
8481

8582
|
86-
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.5.6</a>
83+
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.6.3</a>
8784
&amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.10</a>
8885

8986
</div>

‎docs/_build/html/index.html

+5-7
Original file line numberDiff line numberDiff line change
@@ -1,16 +1,13 @@
1+
12
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
23
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
34

4-
55
<html xmlns="http://www.w3.org/1999/xhtml">
66
<head>
77
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
8-
98
<title>HPAT documentation &#8212; HPAT 0.1 documentation</title>
10-
119
<link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
1210
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
13-
1411
<script type="text/javascript">
1512
var DOCUMENTATION_OPTIONS = {
1613
URL_ROOT: './',
@@ -24,7 +21,7 @@
2421
<script type="text/javascript" src="_static/jquery.js"></script>
2522
<script type="text/javascript" src="_static/underscore.js"></script>
2623
<script type="text/javascript" src="_static/doctools.js"></script>
27-
<script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.0/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
24+
<script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
2825
<link rel="index" title="Index" href="genindex.html" />
2926
<link rel="search" title="Search" href="search.html" />
3027
<link rel="next" title="Overview" href="source/overview.html" />
@@ -35,7 +32,7 @@
3532
<meta name="viewport" content="width=device-width, initial-scale=0.9, maximum-scale=0.9" />
3633

3734
</head>
38-
<body role="document">
35+
<body>
3936

4037

4138
<div class="document">
@@ -63,6 +60,7 @@ <h1>HPAT documentation<a class="headerlink" href="#hpat-documentation" title="Pe
6360
<li class="toctree-l2"><a class="reference internal" href="source/notsupported.html#type-stability">Type Stability</a></li>
6461
</ul>
6562
</li>
63+
<li class="toctree-l1"><a class="reference internal" href="source/install.html">Installing HPAT</a></li>
6664
</ul>
6765
</div>
6866
</div>
@@ -105,7 +103,7 @@ <h3>Quick search</h3>
105103
&copy;2017, Ehsan Totoni.
106104

107105
|
108-
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.5.6</a>
106+
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.6.3</a>
109107
&amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.10</a>
110108

111109
|

‎docs/_build/html/objects.inv

24 Bytes
Binary file not shown.

‎docs/_build/html/search.html

+4-7
Original file line numberDiff line numberDiff line change
@@ -1,16 +1,13 @@
1+
12
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
23
"http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
34

4-
55
<html xmlns="http://www.w3.org/1999/xhtml">
66
<head>
77
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
8-
98
<title>Search &#8212; HPAT 0.1 documentation</title>
10-
119
<link rel="stylesheet" href="_static/alabaster.css" type="text/css" />
1210
<link rel="stylesheet" href="_static/pygments.css" type="text/css" />
13-
1411
<script type="text/javascript">
1512
var DOCUMENTATION_OPTIONS = {
1613
URL_ROOT: './',
@@ -24,7 +21,7 @@
2421
<script type="text/javascript" src="_static/jquery.js"></script>
2522
<script type="text/javascript" src="_static/underscore.js"></script>
2623
<script type="text/javascript" src="_static/doctools.js"></script>
27-
<script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.0/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
24+
<script type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
2825
<script type="text/javascript" src="_static/searchtools.js"></script>
2926
<link rel="index" title="Index" href="genindex.html" />
3027
<link rel="search" title="Search" href="#" />
@@ -42,7 +39,7 @@
4239

4340

4441
</head>
45-
<body role="document">
42+
<body>
4643

4744

4845
<div class="document">
@@ -93,7 +90,7 @@ <h3>Related Topics</h3>
9390
&copy;2017, Ehsan Totoni.
9491

9592
|
96-
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.5.6</a>
93+
Powered by <a href="http://sphinx-doc.org/">Sphinx 1.6.3</a>
9794
&amp; <a href="https://github.com/bitprophet/alabaster">Alabaster 0.7.10</a>
9895

9996
</div>

‎docs/_build/html/searchindex.js

+1-1
Some generated files are not rendered by default. Learn more about customizing how changed files appear on GitHub.

0 commit comments

Comments
 (0)