DESCRIPTION

Package: EpiGenR
Type: Package
Title: Combined analysis of epidemiologic and genetic data to infer infectious disease dynamics
Version: 1.0.0
Author: Lucy M Li
Maintainer: Lucy M Li <ml3109@ic.ac.ukt>
Description: This package contains functions to simulate epidemic data, parse existing data, generate input files for the EpiGenMCMC (github.com/lucymli/EpiGenMCMC) C++ program, and visualise output from EpiGenMCMC.
License: MIT
LazyData: TRUE
Imports:
    Rcpp (>= 0.12.5),
    ape,
    phyclust,
    seqinr,
    lubridate,
    ggplot2,
    coda,
    dplyr,
    magrittr
LinkingTo:
    Rcpp
Suggests: knitr,
    rmarkdown,
    network,
    sna,
    GGally
VignetteBuilder: knitr