TIDDIT-1.1.6

Changed the SR and PE tags of the format fields into RV and DV.

Changed CN into absolute copy number instead of copy number change.

Removed the IDUP variant type.

fixed the stdout bug of the cov module - now stdout produce coverage output!

changed the default settings to discordants = 6 , splitreads = 4; for higher precision, but lower sensitivity.

TIDDIT-1.1.5

Fixed the broken vcf header

TIDDIT-1.1.4

Added a "command line"-line in the vcf header:

##LibraryStats=TIDDIT-1.1.4 Coverage=0.00222201 ReadLength=82 MeanInsertSize=2996 STDInsertSize=2534 Orientation=outtie
TIDDITcmd="TIDDIT --sv -b few_reads"

TIDDIT-1.1.3

version tag!

TIDDIT-1.1.2

Fixed the librarystat header

TIDDIT-1.1.1

same as previous version, but now with proper version tag

TIDDIT-1.1.0

Added the multisample nextflow wrapper

TIDDIT-1.0.5

Fine tuned the expected links filters

changed the links from window filter so that it also analyses window B

Added a library statistics tag to the vcf header

TIDDIT-1.0.4

addded genotyping of all SV types

TIDDIT-1.0.3

Test zenodo