diff --git a/README.md b/README.md index 1f3466d..8671124 100755 --- a/README.md +++ b/README.md @@ -4,12 +4,11 @@ This package is a repository of tools used by the DIVA DNA Seq team at the Joint ## Installation -The tool can be installed using pip with - -```bash -pip install diva_dna_seq +The dependencies of this tool can be installed with: +``` +pip install -r requirements.txt ``` ## Use -This tool can then be used either in a Jupyter notebook or on the command line. A bioanalyzer ladder file and result file are needed. The tool generates a plot that relates library loading concentration for your library to \ No newline at end of file +This tool can then be used either in a Jupyter notebook or on the command line. A bioanalyzer ladder file and result file are needed. The tool generates a plot that relates library loading concentration for your library to diff --git a/predict_loading_concentration.py b/predict_loading_concentration.py index 456021c..ff56abb 100755 --- a/predict_loading_concentration.py +++ b/predict_loading_concentration.py @@ -7,11 +7,11 @@ def warn(*args, **kwargs): from diva_seq_opt import utility import argparse import pickle +import matplotlib as mpl def main(): #Allow Matplotlib to be used on commandline - import matplotlib as mpl mpl.use('Agg') #Handle inputs diff --git a/setup.py b/setup.py index 40cd3da..fe8b8ef 100644 --- a/setup.py +++ b/setup.py @@ -1,7 +1,7 @@ from setuptools import setup setup(name='diva_seq_opt', - version='0.0.3', + version='0.0.4', description='Predict the library loading concentration to use for mi-seq runs based on bioanalyzer data.', url='https://github.com/JBEI/library_loading_concentration_prediction', author='Zak Costello', @@ -9,11 +9,11 @@ license='BSD', packages=['diva_seq_opt'], entry_points = { - 'console_scripts': ['predict_loading_concentration=diva_seq_opt.predict_loading_concentration:main'], + 'console_scripts': ['predict_loading_concentration=predict_loading_concentration:main'], }, install_requires=[ 'pandas','numpy','scipy','matplotlib', 'peakutils','sklearn','tpot' ], include_package_data=True, - zip_safe=False) \ No newline at end of file + zip_safe=False)