diff --git a/.github/workflows/run_ec2_pcluster.yaml b/.github/workflows/run_ec2_pcluster.yaml
index a12d5b2..f865531 100644
--- a/.github/workflows/run_ec2_pcluster.yaml
+++ b/.github/workflows/run_ec2_pcluster.yaml
@@ -130,8 +130,6 @@ jobs:
           cd ${JEDI_ENV}
           mkdir -p build-atm
           cd build-atm
-          rm -rf fv3-jedi
-          rm bin/setup-c48.sh 
           cmake -DUFS_APP=ATM ../ufs-bundle
           make update
           make -j8