This is a draft R package that provides convenience functions for the organization, curation, and visualization of microbiome data sets. This package is lightly maintained by a single human and is provided as is, with no guarantees of any kind.
Please see the CHANGELOG for important updates and bug fixes, and make sure you are using the most recent version of this package. A major bug fix was released January 17, 2022, so please make sure you are running a newer version than that. Any bugs or feature requests can be reported via the issues tab. I can make no guarantee about how soon updates or fixes will happen, but I will do my best to fix critical bugs a quickly as possible.
To use this package I recommend cloning the repository using git. That will make it easiest for you to stay up to date with new versions. If using git is not an option for you, you can download a zip file of the code using the green button at the top right corner of the page; however I recommend you check back at least once every six months and download a new version if there have been updates.
You can install the most stable version of AfterSl1p from GitHub with:
# install.packages("devtools")
devtools::install_github("JCSzamosi/aftersl1p@*release")You can also install the latest, development version with
# install.packages("devtools")
devtools::install_github("JCSzamosi/[email protected]")N.B.: The value after the @ in the development version will change frequently, so check back here (or check the Releases section of the repository) to make sure you’re getting the most recent version.