add code and folders to set subdatasets

dataladConfig.sh

@@ -4,11 +4,11 @@
 
 # raw dataset url (either GIN or openneuro)
 # for DEMO use: [email protected]:/cpp-lln-lab/CPP_visMotion-raw.git
-URL_RAW=''
+URL_RAW='[email protected]:/JacMatu/2021_Nencki_MultimodalLanguage_JM_raw.git'
 
 # derivatives sibling url
 # for DEMO use: [email protected]:/cpp_brewery/CPP_visMotion-derivatives.git
-URL_DER=''
+URL_DER='[email protected]:/JacMatu/analyses_MultimodalLanguageMVPA-derivatives.git'
 
 # derivatives/preproc sibling url
 # for DEMO use: [email protected]:/cpp_brewery/CPP_visMotion-bidspm-preproc.git

dataladSetUp.sh

@@ -3,51 +3,21 @@
 root_dir=${PWD}
 raw_dir=${root_dir}/inputs/raw
 derivatives_dir=${root_dir}/outputs/derivatives
-preproc_dir=${derivatives_dir}/bidspm-preproc
-stats_dir=${derivatives_dir}/bidspm-stats
+#preproc_dir=${derivatives_dir}/bidspm-preproc
+#stats_dir=${derivatives_dir}/bidspm-stats
+#roi_dir=${derivatives_dir}/bidspm-roi
+#cosmo_dir=${derivatives_dir}/cosmo-mvpa
 
 # get url of the gin repos from config
 source dataladConfig.sh
 
 # install raw dataset
 datalad install -d . -s "${URL_RAW}" "${raw_dir}"
 
-# create the derivatives universe of classic sub-subdatasets ()
-# . outputs
-# └── derivatives
-#     ├── bidspm-preproc
-#     └── bidspm-stats
+# install derivatives dataset with submodules (hopefully)
 
-datalad create -d . "${derivatives_dir}"
 
-if [ ! -z "${GIN_BASENAME}" ]; then
-    cd "${derivatives_dir}"
-    datalad create-sibling-gin -d . -s origin --access-protocol ssh --private  cpp_brewery/"${GIN_BASENAME}"-derivatives
-    cd "${root_dir}"
-    datalad subdatasets --set-property url [email protected]:/cpp_brewery/"${GIN_BASENAME}"-derivatives.git "${derivatives_dir}"
-fi
-
-cd "${derivatives_dir}"
-
-datalad create -d . "${preproc_dir}"
-
-if [ ! -z "${GIN_BASENAME}" ]; then
-    cd "${preproc_dir}"
-    datalad create-sibling-gin -d . -s origin --access-protocol ssh --private  cpp_brewery/"${GIN_BASENAME}"-derivatives-bidspm-preproc
-    cd "${derivatives_dir}"
-    datalad subdatasets --set-property url [email protected]:/cpp_brewery/"${GIN_BASENAME}"-derivatives-bidspm-preproc.git bidspm-preproc
-fi
-
-cd "${derivatives_dir}"
-
-datalad create -d . "${stats_dir}"
-
-if [ ! -z "${GIN_BASENAME}" ]; then
-    cd "${stats_dir}"
-    datalad create-sibling-gin -d . -s origin --access-protocol ssh --private  cpp_brewery/"${GIN_BASENAME}"-derivatives-bidspm-stats
-    cd "${derivatives_dir}"
-    datalad subdatasets --set-property url [email protected]:/cpp_brewery/"${GIN_BASENAME}"-derivatives-bidspm-stats.git bidspm-stats
-fi
+datalad install -r -d . -s "${URL_DER}" "${derivatives_dir}"
 
 cd "${derivatives_dir}"