From d9043eb350091bdd17389559054701bfe4177e7c Mon Sep 17 00:00:00 2001 From: James-Thorson-NOAA <50178738+James-Thorson-NOAA@users.noreply.github.com> Date: Mon, 9 Sep 2024 22:47:01 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20James-Th?= =?UTF-8?q?orson-NOAA/dsem@6fb701074a036cebf0b4e05b9a5ed3f9231568c4=20?= =?UTF-8?q?=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- articles/dynamic_factor_analysis.html | 2 +- articles/vignette.html | 2 +- authors.html | 2 +- news/index.html | 2 +- pkgdown.yml | 2 +- reference/TMBAIC.html | 2 +- reference/as_fitted_DAG.html | 2 +- reference/as_sem.html | 2 +- reference/bering_sea.html | 2 +- reference/classify_variables.html | 2 +- reference/dsem.html | 2 +- reference/dsem_control.html | 2 +- reference/isle_royale.html | 2 +- reference/list_parameters.html | 2 +- reference/logLik.dsem.html | 2 +- reference/make_dfa.html | 2 +- reference/make_dsem_ram.html | 2 +- reference/parse_path.html | 2 +- reference/plot.dsem.html | 2 +- reference/predict.dsem.html | 2 +- reference/print.dsem.html | 2 +- reference/residuals.dsem.html | 2 +- reference/sea_otter.html | 2 +- reference/simulate.dsem.html | 2 +- reference/summary.dsem.html | 2 +- reference/vcov.dsem.html | 2 +- 26 files changed, 26 insertions(+), 26 deletions(-) diff --git a/articles/dynamic_factor_analysis.html b/articles/dynamic_factor_analysis.html index d1e6e4d..ed4ab03 100644 --- a/articles/dynamic_factor_analysis.html +++ b/articles/dynamic_factor_analysis.html @@ -62,7 +62,7 @@

James Thorson

- Source: vignettes/dynamic_factor_analysis.Rmd + Source: vignettes/dynamic_factor_analysis.Rmd
dynamic_factor_analysis.Rmd
diff --git a/articles/vignette.html b/articles/vignette.html index 2d0db7f..06c6f41 100644 --- a/articles/vignette.html +++ b/articles/vignette.html @@ -62,7 +62,7 @@

James Thorson

- Source: vignettes/vignette.Rmd + Source: vignettes/vignette.Rmd
vignette.Rmd
diff --git a/authors.html b/authors.html index 3718465..7666d9a 100644 --- a/authors.html +++ b/authors.html @@ -47,7 +47,7 @@

Authors

Citation

-

Source: inst/CITATION

+

Source: inst/CITATION

Thorson, J. T., Andrews, A. G., Essington, T., & Large, S. (2024). Dynamic structural equation models synthesize ecosystem dynamics constrained by ecological mechanisms. Methods in Ecology and Evolution.

@Article{,
diff --git a/news/index.html b/news/index.html
index 9e5d7f5..0852c1a 100644
--- a/news/index.html
+++ b/news/index.html
@@ -34,7 +34,7 @@
   

 
       
Changelog

-      Source: NEWS.md
+      Source: NEWS.md
     

 
     

diff --git a/pkgdown.yml b/pkgdown.yml
index a05f0f5..75b0699 100644
--- a/pkgdown.yml
+++ b/pkgdown.yml
@@ -4,4 +4,4 @@ pkgdown_sha: ~
 articles:
   dynamic_factor_analysis: dynamic_factor_analysis.html
   vignette: vignette.html
-last_built: 2024-07-22T18:32Z
+last_built: 2024-09-09T22:45Z
diff --git a/reference/TMBAIC.html b/reference/TMBAIC.html
index acaa56d..381a468 100644
--- a/reference/TMBAIC.html
+++ b/reference/TMBAIC.html
@@ -34,7 +34,7 @@
   

 
       
Calculate marginal AIC for a fitted model

-      Source: R/TMBAIC.R
+      Source: R/TMBAIC.R
       
TMBAIC.Rd

     

 
diff --git a/reference/as_fitted_DAG.html b/reference/as_fitted_DAG.html
index 3f0b0f4..ad23378 100644
--- a/reference/as_fitted_DAG.html
+++ b/reference/as_fitted_DAG.html
@@ -34,7 +34,7 @@
   

 
       
Convert output from package dsem to phylopath

-      Source: R/dsem.R
+      Source: R/dsem.R
       
as_fitted_DAG.Rd

     

 
diff --git a/reference/as_sem.html b/reference/as_sem.html
index 7a624f7..b47c2ff 100644
--- a/reference/as_sem.html
+++ b/reference/as_sem.html
@@ -34,7 +34,7 @@
   

 
       
Convert dsem to sem output

-      Source: R/dsem.R
+      Source: R/dsem.R
       
as_sem.Rd

     

 
diff --git a/reference/bering_sea.html b/reference/bering_sea.html
index e4d24a0..e568149 100644
--- a/reference/bering_sea.html
+++ b/reference/bering_sea.html
@@ -34,7 +34,7 @@
   

 
       
Bering Sea marine ecosystem

-      Source: R/data.R
+      Source: R/data.R
       
bering_sea.Rd

     

 
diff --git a/reference/classify_variables.html b/reference/classify_variables.html
index 032c087..89a7232 100644
--- a/reference/classify_variables.html
+++ b/reference/classify_variables.html
@@ -34,7 +34,7 @@
   

 
       
Classify variables path

-      Source: R/classify_variables.R
+      Source: R/classify_variables.R
       
classify_variables.Rd

     

 
diff --git a/reference/dsem.html b/reference/dsem.html
index ba9691a..ecd3f14 100644
--- a/reference/dsem.html
+++ b/reference/dsem.html
@@ -34,7 +34,7 @@
   

 
       
Fit dynamic structural equation model

-      Source: R/dsem.R
+      Source: R/dsem.R
       
dsem.Rd

     

 
diff --git a/reference/dsem_control.html b/reference/dsem_control.html
index e8acf95..24c91b9 100644
--- a/reference/dsem_control.html
+++ b/reference/dsem_control.html
@@ -38,7 +38,7 @@
   

 
       
Detailed control for dsem structure

-      Source: R/dsem.R
+      Source: R/dsem.R
       
dsem_control.Rd

     

 
diff --git a/reference/isle_royale.html b/reference/isle_royale.html
index c6b766d..350e503 100644
--- a/reference/isle_royale.html
+++ b/reference/isle_royale.html
@@ -34,7 +34,7 @@
   

 
       
Isle Royale wolf and moose

-      Source: R/data.R
+      Source: R/data.R
       
isle_royale.Rd

     

 
diff --git a/reference/list_parameters.html b/reference/list_parameters.html
index 34edb20..4bcd3af 100644
--- a/reference/list_parameters.html
+++ b/reference/list_parameters.html
@@ -34,7 +34,7 @@
   

 
       
List fixed and random effects

-      Source: R/list_parameters.R
+      Source: R/list_parameters.R
       
list_parameters.Rd

     

 
diff --git a/reference/logLik.dsem.html b/reference/logLik.dsem.html
index b629592..c95985f 100644
--- a/reference/logLik.dsem.html
+++ b/reference/logLik.dsem.html
@@ -34,7 +34,7 @@
   

 
       
Marglinal log-likelihood

-      Source: R/dsem.R
+      Source: R/dsem.R
       
logLik.dsem.Rd

     

 
diff --git a/reference/make_dfa.html b/reference/make_dfa.html
index d3ad95c..fb6f06d 100644
--- a/reference/make_dfa.html
+++ b/reference/make_dfa.html
@@ -36,7 +36,7 @@
   

 
       
Make text for dynamic factor analysis

-      Source: R/make_dfa.R
+      Source: R/make_dfa.R
       
make_dfa.Rd

     

 
diff --git a/reference/make_dsem_ram.html b/reference/make_dsem_ram.html
index 929eab1..c03ba22 100644
--- a/reference/make_dsem_ram.html
+++ b/reference/make_dsem_ram.html
@@ -34,7 +34,7 @@
   

 
       
Make a RAM (Reticular Action Model)

-      Source: R/make_dsem_ram.R
+      Source: R/make_dsem_ram.R
       
make_dsem_ram.Rd

     

 
diff --git a/reference/parse_path.html b/reference/parse_path.html
index 83fb837..0b4b4a6 100644
--- a/reference/parse_path.html
+++ b/reference/parse_path.html
@@ -34,7 +34,7 @@
   

 
       
Parse path

-      Source: R/parse_path.R
+      Source: R/parse_path.R
       
parse_path.Rd

     

 
diff --git a/reference/plot.dsem.html b/reference/plot.dsem.html
index d7ac58f..7f56eaf 100644
--- a/reference/plot.dsem.html
+++ b/reference/plot.dsem.html
@@ -34,7 +34,7 @@
   

 
       
Simulate dsem

-      Source: R/dsem.R
+      Source: R/dsem.R
       
plot.dsem.Rd

     

 
diff --git a/reference/predict.dsem.html b/reference/predict.dsem.html
index 47e6d2a..b82ad83 100644
--- a/reference/predict.dsem.html
+++ b/reference/predict.dsem.html
@@ -34,7 +34,7 @@
   

 
       
predictions using dsem

-      Source: R/dsem.R
+      Source: R/dsem.R
       
predict.dsem.Rd

     

 
diff --git a/reference/print.dsem.html b/reference/print.dsem.html
index bb404ef..46bfccf 100644
--- a/reference/print.dsem.html
+++ b/reference/print.dsem.html
@@ -34,7 +34,7 @@
   

 
       
Print fitted dsem object

-      Source: R/dsem.R
+      Source: R/dsem.R
       
print.dsem.Rd

     

 
diff --git a/reference/residuals.dsem.html b/reference/residuals.dsem.html
index bbf8238..b17fa32 100644
--- a/reference/residuals.dsem.html
+++ b/reference/residuals.dsem.html
@@ -34,7 +34,7 @@
   

 
       
Calculate residuals

-      Source: R/dsem.R
+      Source: R/dsem.R
       
residuals.dsem.Rd

     

 
diff --git a/reference/sea_otter.html b/reference/sea_otter.html
index 03344ee..a084012 100644
--- a/reference/sea_otter.html
+++ b/reference/sea_otter.html
@@ -34,7 +34,7 @@
   

 
       
Sea otter trophic cascade

-      Source: R/data.R
+      Source: R/data.R
       
sea_otter.Rd

     

 
diff --git a/reference/simulate.dsem.html b/reference/simulate.dsem.html
index 1ee9c50..efab2fc 100644
--- a/reference/simulate.dsem.html
+++ b/reference/simulate.dsem.html
@@ -34,7 +34,7 @@
   

 
       
Simulate dsem

-      Source: R/dsem.R
+      Source: R/dsem.R
       
simulate.dsem.Rd

     

 
diff --git a/reference/summary.dsem.html b/reference/summary.dsem.html
index f4a5408..68ec326 100644
--- a/reference/summary.dsem.html
+++ b/reference/summary.dsem.html
@@ -34,7 +34,7 @@
   

 
       
summarize dsem

-      Source: R/dsem.R
+      Source: R/dsem.R
       
summary.dsem.Rd

     

 
diff --git a/reference/vcov.dsem.html b/reference/vcov.dsem.html
index cdf92d4..6244191 100644
--- a/reference/vcov.dsem.html
+++ b/reference/vcov.dsem.html
@@ -34,7 +34,7 @@
   

 
       
Extract Variance-Covariance Matrix

-      Source: R/dsem.R
+      Source: R/dsem.R
       
vcov.dsem.Rd