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update ST data process
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src/gsMap/find_latent_representation.py

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@@ -42,7 +42,6 @@ def preprocess_data(adata, params):
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if params.data_layer in ['count', 'counts']:
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adata.X = adata.layers[params.data_layer].copy()
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logger.warning()
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# HVGs based on count
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sc.pp.highly_variable_genes(adata,flavor="seurat_v3",n_top_genes=params.feat_cell)
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# Normalize the data

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