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environment.yml
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environment.yml
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name: easyfinemap
channels:
- dnachun
- bioconda
- defaults
- conda-forge
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- bcftools=1.17=h3cc50cf_1
- binutils_impl_linux-64=2.40=hf600244_0
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.19.1=hd590300_0
- ca-certificates=2023.7.22=hbcca054_0
- cairo=1.16.0=h0c91306_1017
- caviarbf=1.0=h2bc3f7f_0
- cffi=1.15.1=py311hb3a22ac_5
- curl=8.3.0=hca28451_0
- expat=2.5.0=hcb278e6_1
- finemap=1.4.1=0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- freetype=2.12.1=h267a509_2
- fribidi=1.0.10=h36c2ea0_0
- gcc_impl_linux-64=13.2.0=h338b0a0_2
- gcta=1.94.1=h9ee0642_0
- gettext=0.21.1=h27087fc_0
- gfortran_impl_linux-64=13.2.0=h76e1118_2
- graphite2=1.3.13=h58526e2_1001
- gsl=2.7=he838d99_0
- gxx_impl_linux-64=13.2.0=h338b0a0_2
- harfbuzz=8.2.1=h3d44ed6_0
- htslib=1.18=h81da01d_0
- icu=73.2=h59595ed_0
- jinja2=3.1.2=pyhd8ed1ab_1
- kernel-headers_linux-64=2.6.32=he073ed8_16
- keyutils=1.6.1=h166bdaf_0
- krb5=1.21.2=h659d440_0
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libblas=3.9.0=18_linux64_openblas
- libcblas=3.9.0=18_linux64_openblas
- libcurl=8.3.0=hca28451_0
- libdeflate=1.19=hd590300_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.2=h7f98852_5
- libgcc-devel_linux-64=13.2.0=ha9c7c90_2
- libgcc-ng=13.2.0=h807b86a_2
- libgfortran-ng=13.2.0=h69a702a_2
- libgfortran5=13.2.0=ha4646dd_2
- libglib=2.78.0=hebfc3b9_0
- libgomp=13.2.0=h807b86a_2
- libiconv=1.17=h166bdaf_0
- libjpeg-turbo=2.1.5.1=hd590300_1
- liblapack=3.9.0=18_linux64_openblas
- libnghttp2=1.52.0=h61bc06f_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.24=pthreads_h413a1c8_0
- libpng=1.6.39=h753d276_0
- libsanitizer=13.2.0=h7e041cc_2
- libsqlite=3.43.0=h2797004_0
- libssh2=1.11.0=h0841786_0
- libstdcxx-devel_linux-64=13.2.0=ha9c7c90_2
- libstdcxx-ng=13.2.0=h7e041cc_2
- libtiff=4.6.0=h29866fb_1
- libuuid=2.38.1=h0b41bf4_0
- libwebp-base=1.3.2=hd590300_0
- libxcb=1.15=h0b41bf4_0
- libzlib=1.2.13=hd590300_5
- make=4.3=hd18ef5c_1
- markupsafe=2.1.3=py311h459d7ec_1
- ncurses=6.4=hcb278e6_0
- openssl=3.1.3=hd590300_0
- paintor=3.1=h2bc3f7f_0
- pango=1.50.14=ha41ecd1_2
- pcre2=10.40=hc3806b6_0
- perl=5.32.1=4_hd590300_perl5
- pip=23.2.1=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- plink=1.90b6.21=h031d066_5
- pthread-stubs=0.4=h36c2ea0_1001
- pycparser=2.21=pyhd8ed1ab_0
- python=3.11.5=hab00c5b_0_cpython
- python_abi=3.11=4_cp311
- pytz=2023.3.post1=pyhd8ed1ab_0
- r-base=4.3.1=h639d9d3_5
- r-cli=3.6.1=r43ha503ecb_1
- r-codetools=0.2_19=r43hc72bb7e_1
- r-colorspace=2.1_0=r43h57805ef_1
- r-crayon=1.5.2=r43hc72bb7e_2
- r-data.table=1.14.8=r43h029312a_2
- r-ellipsis=0.3.2=r43h57805ef_2
- r-fansi=1.0.4=r43h57805ef_1
- r-farver=2.1.1=r43ha503ecb_2
- r-foreach=1.5.2=r43hc72bb7e_2
- r-ggplot2=3.4.3=r43hc72bb7e_0
- r-glmnet=4.1_8=r43hcf54a89_0
- r-glue=1.6.2=r43h57805ef_2
- r-gtable=0.3.4=r43hc72bb7e_0
- r-irlba=2.3.5.1=r43h316c678_1
- r-isoband=0.2.7=r43ha503ecb_2
- r-iterators=1.0.14=r43hc72bb7e_2
- r-labeling=0.4.3=r43hc72bb7e_0
- r-lattice=0.21_8=r43h57805ef_1
- r-lifecycle=1.0.3=r43hc72bb7e_2
- r-magrittr=2.0.3=r43h57805ef_2
- r-mass=7.3_60=r43h57805ef_1
- r-matrix=1.6_1.1=r43h316c678_0
- r-matrixstats=1.0.0=r43h57805ef_1
- r-mgcv=1.9_0=r43h316c678_0
- r-mixsqp=0.3_48=r43h08d816e_1
- r-munsell=0.5.0=r43hc72bb7e_1006
- r-nlme=3.1_163=r43h61816a4_0
- r-pillar=1.9.0=r43hc72bb7e_1
- r-pkgconfig=2.0.3=r43hc72bb7e_3
- r-plyr=1.8.8=r43ha503ecb_1
- r-r6=2.5.1=r43hc72bb7e_2
- r-rcolorbrewer=1.1_3=r43h785f33e_2
- r-rcpp=1.0.11=r43h7df8631_0
- r-rcpparmadillo=0.12.6.4.0=r43h08d816e_0
- r-rcppeigen=0.3.3.9.3=r43h08d816e_1
- r-reshape=0.8.9=r43hc72bb7e_2
- r-rlang=1.1.1=r43ha503ecb_1
- r-scales=1.2.1=r43hc72bb7e_2
- r-shape=1.4.6=r43ha770c72_2
- r-survival=3.5_7=r43h57805ef_0
- r-susier=0.12.35=r43hc72bb7e_1
- r-tibble=3.2.1=r43h57805ef_2
- r-utf8=1.2.3=r43h57805ef_1
- r-vctrs=0.6.3=r43ha503ecb_0
- r-viridislite=0.4.2=r43hc72bb7e_1
- r-withr=2.5.0=r43hc72bb7e_2
- readline=8.2=h8228510_1
- rpy2=3.5.11=py311r43h1f0f07a_2
- sed=4.8=he412f7d_0
- setuptools=68.2.2=pyhd8ed1ab_0
- simplegeneric=0.8.1=py_1
- sysroot_linux-64=2.12=he073ed8_16
- tk=8.6.13=h2797004_0
- tktable=2.10=h0c5db8f_4
- tzdata=2023c=h71feb2d_0
- tzlocal=5.0.1=py311h38be061_1
- wheel=0.41.2=pyhd8ed1ab_0
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.1.1=hd590300_0
- xorg-libsm=1.2.4=h7391055_0
- xorg-libx11=1.8.6=h8ee46fc_0
- xorg-libxau=1.0.11=hd590300_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxrender=0.9.11=hd590300_0
- xorg-libxt=1.3.0=hd590300_1
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- zlib=1.2.13=hd590300_5
- zstd=1.5.5=hfc55251_0
- pip:
- certifi==2023.7.22
- charset-normalizer==3.2.0
- click==8.1.7
- contourpy==1.1.1
- cycler==0.11.0
- dill==0.3.7
- easyfinemap==0.4.4
- fonttools==4.42.1
- idna==3.4
- kiwisolver==1.4.5
- liftover==1.1.16
- markdown-it-py==3.0.0
- matplotlib==3.8.0
- mdurl==0.1.2
- multiprocess==0.70.15
- numpy==1.26.0
- packaging==23.1
- pandas==1.5.3
- pathos==0.3.1
- pillow==10.0.1
- pox==0.3.3
- ppft==1.7.6.7
- pygments==2.16.1
- pyparsing==3.1.1
- pytabix==0.1
- python-dateutil==2.8.2
- requests==2.31.0
- rich==13.5.3
- scipy==1.11.2
- six==1.16.0
- smunger==0.1.5
- typer==0.7.0
- urllib3==1.26.15
prefix: /mnt/hpc/home/wangjianhua/mambaforge/envs/easyfinemap