.gitlab-ci.yml

# This file is a template, and might need editing before it works on your project.
# To contribute improvements to CI/CD templates, please follow the Development guide at:
# https://docs.gitlab.com/ee/development/cicd/templates.html
# This specific template is located at:
# https://gitlab.com/gitlab-org/gitlab/-/blob/master/lib/gitlab/ci/templates/Python.gitlab-ci.yml

# Official language image. Look for the different tagged releases at:
# https://hub.docker.com/r/library/python/tags/
image: jugit-registry.fz-juelich.de/ibg-1/modsim/imageanalysis/uat/python:3.9

# Change pip's cache directory to be inside the project directory since we can
# only cache local items.
variables:
  PIP_CACHE_DIR: "$CI_PROJECT_DIR/.cache/pip"

stages:
  - build
  - test
  - deploy

test:
  image: jugit-registry.fz-juelich.de/ibg-1/modsim/imageanalysis/uat/miniconda3 #continuumio/miniconda3
  stage: test
  tags:
    - bigmem
  script:
    - conda install -y python=3.9 gcc -c conda-forge
    - pip install --upgrade pip
    - pip install .[test]
    - pip install tox flake8  # you can also use tox
    - tox -e py39
    - pip install papermill
    # create kernel for jupyter notebook
    - pip install --upgrade pip ipython ipykernel
    - ipython kernel install --name "python3" --user
    # test the example notebook
    - papermill example_simple.ipynb example_simple_exec.ipynb
    - papermill example_simple_custom.ipynb example_simple_exec.ipynb
  coverage: '/TOTAL.*\s+(\d+%)/'
  artifacts:
    reports:
      coverage_report:
        coverage_format: cobertura
        path: coverage.xml
      junit: report.xml

run:
  stage: build
  script:
    - python setup.py bdist_wheel
    # an alternative approach is to install and run:
    - pip install dist/*
    # run the command here
    - python -c "import uatrack"
  artifacts:
    paths:
      - dist/*.whl

.deploy_common:
  # common config
  rules:
    - if: '$CI_COMMIT_BRANCH == $CI_DEFAULT_BRANCH'


upload_package:
  stage: deploy
  # dot pass artifacts from other stages
  dependencies: []
  cache: []
  extends: .deploy_common
  script:
    - set -e
    - pip install twine bump2version
    - git config --global user.email "${GITLAB_USER_EMAIL}"
    - git config --global user.name "${GITLAB_USER_NAME}"
    - git log
    # list tags
    - git tag
    - bump2version patch
    - python setup.py sdist bdist_wheel
    - ls -all dist/
    - TWINE_PASSWORD=${CI_JOB_TOKEN} TWINE_USERNAME=gitlab-ci-token python -m twine upload --repository-url ${CI_API_V4_URL}/projects/${CI_PROJECT_ID}/packages/pypi dist/*
    - git remote set-url origin "https://${CI_PUSH_NAME}:${CI_PUSH_TOKEN}@jugit.fz-juelich.de/${CI_PROJECT_NAMESPACE}/${CI_PROJECT_NAME}.git"
    - git push -o ci.skip --tags origin HEAD:${CI_COMMIT_REF_NAME}
    - TWINE_PASSWORD=${PYPI_API_TOKEN} TWINE_USERNAME=__token__ twine upload --repository pypi dist/*
  artifacts:
    paths:
      - dist/