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Peak performance paper#17

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Y0dler merged 46 commits intomainJuBiotech/peak-performance:mainfrom peak-performance-paperJuBiotech/peak-performance:peak-performance-paperCopy head branch name to clipboardOct 13, 2024

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Commits on Oct 13, 2024

• add paper folder with paper.md and images

  

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  2ce57dc

• add bibliography file

  

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  0f597e8

• update frontmatter of paper.md

  

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  3861ed7

• Create draft-pdf.yml

  

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• Update draft-pdf.yml

  

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  9eb4662

• Update draft-pdf.yml

  

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  27066a5

• Update draft-pdf.yml

  

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  7867947

• change $ to $$ in table 1

  

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  9d7ec19

• test removing begin and end equation

  

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  8416645

• Try to fix formula formatting

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• Autoformat bib file

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• Fix another formula

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• remove stale reference to equation 6

  

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• add test pandoc table

  

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  a2383f8

• different test table

  

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  5a67fa2

• remove pandoc test table

  

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  c260cd5

• test reformatting formula 1

  

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  1f772a3

• Change formulae with \mathrm{}

  

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  46cf507

• double citation seperated by semicolon

  

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  a18075b

• move Figure 2 and final additions of mathrm

  

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  c2cb84b

• remove dot behind equation

  

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  3f3dbc2

• exchange Fig 1 and 2 for new versions

  

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  6eba8ab

• Apply suggestions from code review regarding text

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  6ab7a59

• add RWTH affiliation

  

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  f487900

• add results table as PDF

  

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  033edd1

• add results table as svg

  

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  51c5742

• Embed table from SVG

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  75f2d89

• Format table 2 as pandoc grid table

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  9263f60

• Autoformat pre-commit

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  36de419

• Try to fix table formatting

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  832167d

• Try to fix table formatting

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  98f2681

• Revert to embedding Table 2 from SVG

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  ef1e5e0

• Set font and align columns in Table 2

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  b454868

• fix percent signs, some citations, and R_hat

  

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  2f28e9e

• fix matplotlib reference and add numpy one

  

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  0ab5e62

• apply pre-commit changes

  

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  1533f73

• reduce paper length; oursource model structure to .md file

  

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  445b36c

• pre-commit changes

  

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  c026d12

• trim down validation section

  

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  eb008cd

• Move peak model composition to documentation

  

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  e59d889

• shorten even more, remove diagnostic plots

  

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  5eccece

• Remove validation completely

  

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  856626d

• Remove peak model composition file for now

  

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  4e0f870

• add raw data and notebooks for validation plot

  

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  478838f

• pre-commit changes

  

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  9756204

• rename new notebooks and add to index

  

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  4d02029