From 18ab4e760fa6d03e4703a97efdbc14ac37648753 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jochen=20Nie=C3=9Fer?= <104903134+Y0dler@users.noreply.github.com> Date: Tue, 17 Dec 2024 16:01:49 +0100 Subject: [PATCH 1/5] Create CITATION.cff --- CITATION.cff | 54 ++++++++++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 54 insertions(+) create mode 100644 CITATION.cff diff --git a/CITATION.cff b/CITATION.cff new file mode 100644 index 0000000..0b95486 --- /dev/null +++ b/CITATION.cff @@ -0,0 +1,54 @@ +cff-version: "1.2.0" +authors: +- family-names: Nießer + given-names: Jochen + orcid: "https://orcid.org/0000-0001-5397-0682" +- family-names: Osthege + given-names: Michael + orcid: "https://orcid.org/0000-0002-2734-7624" +- family-names: Lieres + given-names: Eric + name-particle: von + orcid: "https://orcid.org/0000-0002-0309-8408" +- family-names: Wiechert + given-names: Wolfgang + orcid: "https://orcid.org/0000-0001-8501-0694" +- family-names: Noack + given-names: Stephan + orcid: "https://orcid.org/0000-0001-9784-3626" +doi: 10.5281/zenodo.14261846 +message: If you use this software, please cite our article in the + Journal of Open Source Software. +preferred-citation: + authors: + - family-names: Nießer + given-names: Jochen + orcid: "https://orcid.org/0000-0001-5397-0682" + - family-names: Osthege + given-names: Michael + orcid: "https://orcid.org/0000-0002-2734-7624" + - family-names: Lieres + given-names: Eric + name-particle: von + orcid: "https://orcid.org/0000-0002-0309-8408" + - family-names: Wiechert + given-names: Wolfgang + orcid: "https://orcid.org/0000-0001-8501-0694" + - family-names: Noack + given-names: Stephan + orcid: "https://orcid.org/0000-0001-9784-3626" + date-published: 2024-12-13 + doi: 10.21105/joss.07313 + issn: 2475-9066 + issue: 104 + journal: Journal of Open Source Software + publisher: + name: Open Journals + start: 7313 + title: PeakPerformance - A tool for Bayesian inference-based fitting + of LC-MS/MS peaks + type: article + url: "https://joss.theoj.org/papers/10.21105/joss.07313" + volume: 9 +title: PeakPerformance - A tool for Bayesian inference-based fitting of + LC-MS/MS peaks From a6aeec11da350157d44cba139811435b8dc0db2c Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jochen=20Nie=C3=9Fer?= <104903134+Y0dler@users.noreply.github.com> Date: Tue, 17 Dec 2024 16:07:16 +0100 Subject: [PATCH 2/5] Update README.md after JOSS publication --- README.md | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 1edb625..9ffd5c0 100644 --- a/README.md +++ b/README.md @@ -40,5 +40,6 @@ If you encounter bugs while using PeakPerformance, please bring them to our atte When contributing code, create a local clone of PeakPerformance, create a new branch, and open a pull request (PR). # How to cite -Head over to Zenodo to [generate a BibTeX citation](https://doi.org/10.5281/zenodo.10255543) for the latest release. -A publication has just been submitted to a scientific journal. Once published, this section will be updated. +Head over to Zenodo to [generate a BibTeX citation](https://doi.org/10.5281/zenodo.10255543) for the latest release. +In addition to the utilized software version, cite our scientific publication over at the Journal of Open-Source Software (JOSS). +A detailed citation can be found in CITATION.cff and in the sidebar. From 7fa2a29eb4e3d9e1299fb0e4aa7b575cbc02bf55 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jochen=20Nie=C3=9Fer?= <104903134+Y0dler@users.noreply.github.com> Date: Tue, 17 Dec 2024 16:11:33 +0100 Subject: [PATCH 3/5] Add JOSS DOI to README.md --- README.md | 1 + 1 file changed, 1 insertion(+) diff --git a/README.md b/README.md index 9ffd5c0..fb0e46b 100644 --- a/README.md +++ b/README.md @@ -2,6 +2,7 @@ [![pipeline](https://github.com/jubiotech/peak-performance/workflows/pipeline/badge.svg)](https://github.com/JuBiotech/peak-performance/actions) [![coverage](https://codecov.io/gh/jubiotech/peak-performance/branch/main/graph/badge.svg)](https://app.codecov.io/gh/JuBiotech/peak-performance) [![documentation](https://readthedocs.org/projects/peak-performance/badge/?version=latest)](https://peak-performance.readthedocs.io/en/latest) +[![DOI](https://joss.theoj.org/papers/10.21105/joss.07313/status.svg)](https://doi.org/10.21105/joss.07313) [![DOI](https://zenodo.org/badge/713469041.svg)](https://zenodo.org/doi/10.5281/zenodo.10255543) # About PeakPerformance From acfc7d955312a69346a4a860c8f90527636a21d2 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Jochen=20Nie=C3=9Fer?= <104903134+Y0dler@users.noreply.github.com> Date: Tue, 17 Dec 2024 16:20:15 +0100 Subject: [PATCH 4/5] Fix typo in README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index fb0e46b..f5441dc 100644 --- a/README.md +++ b/README.md @@ -42,5 +42,5 @@ When contributing code, create a local clone of PeakPerformance, create a new br # How to cite Head over to Zenodo to [generate a BibTeX citation](https://doi.org/10.5281/zenodo.10255543) for the latest release. -In addition to the utilized software version, cite our scientific publication over at the Journal of Open-Source Software (JOSS). +In addition to the utilized software version, cite our scientific publication over at the Journal of Open Source Software (JOSS). A detailed citation can be found in CITATION.cff and in the sidebar. From 9f8c0a043a9a4a6f5d0c8ee153481945322e1003 Mon Sep 17 00:00:00 2001 From: Michael Osthege Date: Wed, 18 Dec 2024 10:40:11 +0100 Subject: [PATCH 5/5] Please and fix pre-commit --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index f5441dc..a10ab7a 100644 --- a/README.md +++ b/README.md @@ -41,6 +41,6 @@ If you encounter bugs while using PeakPerformance, please bring them to our atte When contributing code, create a local clone of PeakPerformance, create a new branch, and open a pull request (PR). # How to cite -Head over to Zenodo to [generate a BibTeX citation](https://doi.org/10.5281/zenodo.10255543) for the latest release. -In addition to the utilized software version, cite our scientific publication over at the Journal of Open Source Software (JOSS). +Head over to Zenodo to [generate a BibTeX citation](https://doi.org/10.5281/zenodo.10255543) for the latest release. +In addition to the utilized software version, please cite our scientific publication over at the Journal of Open Source Software (JOSS). A detailed citation can be found in CITATION.cff and in the sidebar.