From 58243a8aaac2e672f41034a94c99c535d342e15f Mon Sep 17 00:00:00 2001 From: Songchen Tan Date: Mon, 30 Sep 2024 12:51:35 -0400 Subject: [PATCH] Fix benchmark --- Project.toml | 6 +- benchmark/Manifest.toml | 1377 +++++++++++++++++++++++------------- benchmark/Project.toml | 10 +- benchmark/benchmarks.jl | 10 +- benchmark/helper.jl | 32 - benchmark/pinn.jl | 8 +- benchmark/runbenchmarks.jl | 32 +- benchmark/scalar.jl | 2 +- 8 files changed, 924 insertions(+), 553 deletions(-) delete mode 100644 benchmark/helper.jl diff --git a/Project.toml b/Project.toml index 0249b82..86255b5 100644 --- a/Project.toml +++ b/Project.toml @@ -24,7 +24,7 @@ ChainRules = "1" ChainRulesCore = "1" NNlib = "0.9" SpecialFunctions = "2" -SymbolicUtils = "2, 3" -Symbolics = "5.30.1, 6" -Zygote = "0.6.55" +SymbolicUtils = "3" +Symbolics = "6" +Zygote = "0.6" julia = "1.6" diff --git a/benchmark/Manifest.toml b/benchmark/Manifest.toml index 73dc86b..7210a84 100644 --- a/benchmark/Manifest.toml +++ b/benchmark/Manifest.toml @@ -1,13 +1,18 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.9.3" +julia_version = "1.10.5" manifest_format = "2.0" -project_hash = "b3e5f4cf27d760c93b2634d045748b8e8637f186" +project_hash = "448f3cae2dea59422644934cbad9b5490d5dc6eb" [[deps.ADTypes]] -git-tree-sha1 = "a4c8e0f8c09d4aa708289c1a5fc23e2d1970017a" +git-tree-sha1 = "eea5d80188827b35333801ef97a40c2ed653b081" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.1" +version = "1.9.0" +weakdeps = ["ChainRulesCore", "EnzymeCore"] + + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesEnzymeCoreExt = "EnzymeCore" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -21,20 +26,51 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractTrees]] -git-tree-sha1 = "faa260e4cb5aba097a73fab382dd4b5819d8ec8c" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.4" +version = "0.4.5" + +[[deps.Accessors]] +deps = ["CompositionsBase", "ConstructionBase", "InverseFunctions", "LinearAlgebra", "MacroTools", "Markdown"] +git-tree-sha1 = "b392ede862e506d451fc1616e79aa6f4c673dab8" +uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" +version = "0.1.38" + + [deps.Accessors.extensions] + AccessorsAxisKeysExt = "AxisKeys" + AccessorsDatesExt = "Dates" + AccessorsIntervalSetsExt = "IntervalSets" + AccessorsStaticArraysExt = "StaticArrays" + AccessorsStructArraysExt = "StructArrays" + AccessorsTestExt = "Test" + AccessorsUnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + Dates = "ade2ca70-3891-5945-98fb-dc099432e06a" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "76289dc51920fdc6e0013c872ba9551d54961c24" +git-tree-sha1 = "6a55b747d1812e699320963ffde36f1ebdda4099" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.6.2" +version = "4.0.4" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] AdaptStaticArraysExt = "StaticArrays" +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" + [[deps.ArgCheck]] git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" @@ -45,16 +81,20 @@ uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" version = "1.1.1" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "f83ec24f76d4c8f525099b2ac475fc098138ec31" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "3640d077b6dafd64ceb8fd5c1ec76f7ca53bcf76" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.4.11" +version = "7.16.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -62,7 +102,11 @@ version = "7.4.11" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" @@ -75,141 +119,96 @@ git-tree-sha1 = "c06a868224ecba914baa6942988e2f2aade419be" uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" version = "0.1.0" -[[deps.BFloat16s]] -deps = ["LinearAlgebra", "Printf", "Random", "Test"] -git-tree-sha1 = "dbf84058d0a8cbbadee18d25cf606934b22d7c66" -uuid = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" -version = "0.4.2" - -[[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "e28912ce94077686443433c2800104b061a827ed" -uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.39" - - [deps.BangBang.extensions] - BangBangChainRulesCoreExt = "ChainRulesCore" - BangBangDataFramesExt = "DataFrames" - BangBangStaticArraysExt = "StaticArrays" - BangBangStructArraysExt = "StructArrays" - BangBangTypedTablesExt = "TypedTables" - - [deps.BangBang.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" - TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" - [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" -[[deps.Baselet]] -git-tree-sha1 = "aebf55e6d7795e02ca500a689d326ac979aaf89e" -uuid = "9718e550-a3fa-408a-8086-8db961cd8217" -version = "0.1.1" - [[deps.BenchmarkTools]] deps = ["JSON", "Logging", "Printf", "Profile", "Statistics", "UUIDs"] -git-tree-sha1 = "d9a9701b899b30332bbcb3e1679c41cce81fb0e8" +git-tree-sha1 = "f1dff6729bc61f4d49e140da1af55dcd1ac97b2f" uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -version = "1.3.2" +version = "1.5.0" [[deps.Bijections]] -git-tree-sha1 = "fe4f8c5ee7f76f2198d5c2a06d3961c249cce7bd" +git-tree-sha1 = "d8b0439d2be438a5f2cd68ec158fe08a7b2595b7" uuid = "e2ed5e7c-b2de-5872-ae92-c73ca462fb04" -version = "0.1.4" +version = "0.1.9" [[deps.BitFlags]] -git-tree-sha1 = "43b1a4a8f797c1cddadf60499a8a077d4af2cd2d" +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" -version = "0.1.7" +version = "0.1.9" + +[[deps.BitTwiddlingConvenienceFunctions]] +deps = ["Static"] +git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" +uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" +version = "0.1.6" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" -[[deps.CUDA]] -deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CUDA_Driver_jll", "CUDA_Runtime_Discovery", "CUDA_Runtime_jll", "ExprTools", "GPUArrays", "GPUCompiler", "KernelAbstractions", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Preferences", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions", "UnsafeAtomicsLLVM"] -git-tree-sha1 = "968c1365e2992824c3e7a794e30907483f8469a9" -uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "4.4.1" - -[[deps.CUDA_Driver_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg"] -git-tree-sha1 = "498f45593f6ddc0adff64a9310bb6710e851781b" -uuid = "4ee394cb-3365-5eb0-8335-949819d2adfc" -version = "0.5.0+1" - -[[deps.CUDA_Runtime_Discovery]] -deps = ["Libdl"] -git-tree-sha1 = "bcc4a23cbbd99c8535a5318455dcf0f2546ec536" -uuid = "1af6417a-86b4-443c-805f-a4643ffb695f" -version = "0.2.2" - -[[deps.CUDA_Runtime_jll]] -deps = ["Artifacts", "CUDA_Driver_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "5248d9c45712e51e27ba9b30eebec65658c6ce29" -uuid = "76a88914-d11a-5bdc-97e0-2f5a05c973a2" -version = "0.6.0+0" - -[[deps.CUDNN_jll]] -deps = ["Artifacts", "CUDA_Runtime_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "75923dce4275ead3799b238e10178a68c07dbd3b" -uuid = "62b44479-cb7b-5706-934f-f13b2eb2e645" -version = "8.9.4+0" +[[deps.CPUSummary]] +deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] +git-tree-sha1 = "5a97e67919535d6841172016c9530fd69494e5ec" +uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" +version = "0.2.6" [[deps.ChainRules]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "f98ae934cd677d51d2941088849f0bf2f59e6f6e" +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "be227d253d132a6d57f9ccf5f67c0fb6488afd87" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.53.0" +version = "1.71.0" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "e30f2f4e20f7f186dc36529910beaedc60cfa644" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "3e4b134270b372f2ed4d4d0e936aabaefc1802bc" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.16.0" +version = "1.25.0" +weakdeps = ["SparseArrays"] -[[deps.ChainRulesOverloadGeneration]] -deps = ["ChainRulesCore"] -git-tree-sha1 = "3ea2d5853a4d132aedd294047bab373333e92027" -uuid = "f51149dc-2911-5acf-81fc-2076a2a81d4f" -version = "0.1.4" + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" -[[deps.ChangesOfVariables]] -deps = ["LinearAlgebra", "Test"] -git-tree-sha1 = "2fba81a302a7be671aefe194f0525ef231104e7f" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.8" -weakdeps = ["InverseFunctions"] - - [deps.ChangesOfVariables.extensions] - ChangesOfVariablesInverseFunctionsExt = "InverseFunctions" +[[deps.CloseOpenIntervals]] +deps = ["Static", "StaticArrayInterface"] +git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" +uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" +version = "0.1.13" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" +git-tree-sha1 = "bce6804e5e6044c6daab27bb533d1295e4a2e759" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.2" +version = "0.7.6" [[deps.Combinatorics]] git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" version = "1.0.2" +[[deps.CommonSolve]] +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" +uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" +version = "0.2.4" + [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" + +[[deps.CommonWorldInvalidations]] +git-tree-sha1 = "ae52d1c52048455e85a387fbee9be553ec2b68d0" +uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" +version = "1.0.0" [[deps.Compat]] -deps = ["UUIDs"] -git-tree-sha1 = "e460f044ca8b99be31d35fe54fc33a5c33dd8ed7" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "8ae8d32e09f0dcf42a36b90d4e17f5dd2e4c4215" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "4.9.0" +version = "4.16.0" weakdeps = ["Dates", "LinearAlgebra"] [deps.Compat.extensions] @@ -218,7 +217,12 @@ weakdeps = ["Dates", "LinearAlgebra"] [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" -version = "1.0.5+0" +version = "1.1.1+0" + +[[deps.CompositeTypes]] +git-tree-sha1 = "bce26c3dab336582805503bed209faab1c279768" +uuid = "b152e2b5-7a66-4b01-a709-34e65c35f657" +version = "0.1.4" [[deps.CompositionsBase]] git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" @@ -236,40 +240,37 @@ version = "0.2.3" [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" +git-tree-sha1 = "ea32b83ca4fefa1768dc84e504cc0a94fb1ab8d1" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.2.1" +version = "2.4.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "fe2838a593b5f776e1597e086dcd47560d94e816" +git-tree-sha1 = "76219f1ed5771adbb096743bff43fb5fdd4c1157" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.3" +version = "1.5.8" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" - [deps.ConstructionBase.weakdeps] - IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" - StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" - -[[deps.ContextVariablesX]] -deps = ["Compat", "Logging", "UUIDs"] -git-tree-sha1 = "25cc3803f1030ab855e383129dcd3dc294e322cc" -uuid = "6add18c4-b38d-439d-96f6-d6bc489c04c5" -version = "0.1.3" +[[deps.CpuId]] +deps = ["Markdown"] +git-tree-sha1 = "fcbb72b032692610bfbdb15018ac16a36cf2e406" +uuid = "adafc99b-e345-5852-983c-f28acb93d879" +version = "0.3.1" [[deps.DataAPI]] -git-tree-sha1 = "8da84edb865b0b5b0100c0666a9bc9a0b71c553c" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.15.0" +version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "3dbd312d370723b6bb43ba9d02fc36abade4518d" +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.15" +version = "0.18.20" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -280,17 +281,6 @@ version = "1.0.0" deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" -[[deps.DefineSingletons]] -git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" -uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" -version = "0.1.2" - -[[deps.DelimitedFiles]] -deps = ["Mmap"] -git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" -uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" -version = "1.9.1" - [[deps.DiffResults]] deps = ["StaticArraysCore"] git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" @@ -303,77 +293,147 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DispatchDoctor]] +deps = ["MacroTools", "Preferences"] +git-tree-sha1 = "19eec8ee5cde1c10aa5e5e0f25d10a3b4c8f8f12" +uuid = "8d63f2c5-f18a-4cf2-ba9d-b3f60fc568c8" +version = "0.4.15" +weakdeps = ["ChainRulesCore", "EnzymeCore"] + + [deps.DispatchDoctor.extensions] + DispatchDoctorChainRulesCoreExt = "ChainRulesCore" + DispatchDoctorEnzymeCoreExt = "EnzymeCore" + [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" +[[deps.Distributions]] +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "d7477ecdafb813ddee2ae727afa94e9dcb5f3fb0" +uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" +version = "0.25.112" + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + + [deps.Distributions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DensityInterface = "b429d917-457f-4dbc-8f4c-0cc954292b1d" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + [[deps.DocStringExtensions]] deps = ["LibGit2"] git-tree-sha1 = 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deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "2e57b4a4f9cc15e85a24d603256fe08e527f48d1" +git-tree-sha1 = "62ee71528cca49be797076a76bdc654a170a523e" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "8.8.1" +version = "10.3.1" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "ec632f177c0d990e64d955ccc1b8c04c485a0950" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.1.6" [[deps.GPUCompiler]] -deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "Scratch", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "72b2e3c2ba583d1a7aa35129e56cf92e07c083e3" +deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "PrecompileTools", "Preferences", "Scratch", "Serialization", "TOML", "TimerOutputs", "UUIDs"] +git-tree-sha1 = "1d6f290a5eb1201cd63574fbc4440c788d5cb38f" uuid = 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InverseFunctionsDatesExt = "Dates" + InverseFunctionsTestExt = "Test" [[deps.IrrationalConstants]] git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" @@ -462,9 +571,9 @@ version = "1.0.0" [[deps.JLLWrappers]] deps = ["Artifacts", "Preferences"] -git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca" +git-tree-sha1 = "f389674c99bfcde17dc57454011aa44d5a260a40" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.5.0" +version = "1.6.0" [[deps.JSON]] deps = ["Dates", "Mmap", "Parsers", "Unicode"] @@ -472,46 +581,67 @@ git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.4" -[[deps.JuliaVariables]] -deps = ["MLStyle", "NameResolution"] -git-tree-sha1 = "49fb3cb53362ddadb4415e9b73926d6b40709e70" -uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" -version = "0.2.4" - -[[deps.JuliennedArrays]] -git-tree-sha1 = "4aeebbfcf0615641ec4b0782b73b638eeeabd62e" -uuid = "5cadff95-7770-533d-a838-a1bf817ee6e0" -version = 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[deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -914,21 +1150,86 @@ git-tree-sha1 = 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"SpecialFunctions", "Statistics"] +git-tree-sha1 = "ed1cfb44422eaa9804c8a596a8227a6e2baaeef7" uuid = "d49dbf32-c5c2-4618-8acc-27bb2598ef2d" -version = "0.1.1" +version = "1.0.3" + + [deps.WeightInitializers.extensions] + WeightInitializersAMDGPUExt = ["AMDGPU", "GPUArrays"] + WeightInitializersCUDAExt = ["CUDA", "GPUArrays"] + WeightInitializersChainRulesCoreExt = "ChainRulesCore" + WeightInitializersGPUArraysExt = "GPUArrays" + WeightInitializersMetalExt = ["Metal", "GPUArrays"] + WeightInitializersoneAPIExt = ["oneAPI", "GPUArrays"] + + [deps.WeightInitializers.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" -version = "1.2.13+0" +version = "1.2.13+1" [[deps.Zygote]] deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "e2fe78907130b521619bc88408c859a472c4172b" +git-tree-sha1 = "f2f85ad73ca67b5d3c94239b0fde005e0fe2d900" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.63" +version = "0.6.71" [deps.Zygote.extensions] ZygoteColorsExt = "Colors" @@ -1207,27 +1586,21 @@ version = "0.6.63" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "977aed5d006b840e2e40c0b48984f7463109046d" +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.3" - -[[deps.cuDNN]] -deps = ["CEnum", "CUDA", "CUDNN_jll"] -git-tree-sha1 = "ee79f97d07bf875231559f9b3f2649f34fac140b" -uuid = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" -version = "1.1.0" +version = "0.2.5" [[deps.libblastrampoline_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" -version = "5.8.0+0" +version = "5.11.0+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" -version = "1.48.0+0" +version = "1.52.0+1" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" -version = "17.4.0+0" +version = "17.4.0+2" diff --git a/benchmark/Project.toml b/benchmark/Project.toml index 4f8d0e5..30011e7 100644 --- a/benchmark/Project.toml +++ b/benchmark/Project.toml @@ -1,19 +1,11 @@ [deps] BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" -ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" +Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" HTTP = "cd3eb016-35fb-5094-929b-558a96fad6f3" JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" Lux = "b2108857-7c20-44ae-9111-449ecde12c47" PkgBenchmark = "32113eaa-f34f-5b0d-bd6c-c81e245fc73d" -ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" -SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" TaylorDiff = "b36ab563-344f-407b-a36a-4f200bebf99c" TaylorSeries = "6aa5eb33-94cf-58f4-a9d0-e4b2c4fc25ea" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" -SliceMap = "82cb661a-3f19-5665-9e27-df437c7e54c8" - -[compat] -Zygote = "0.6.55" -julia = "1.6" diff --git a/benchmark/benchmarks.jl b/benchmark/benchmarks.jl index 7226ee2..2e01037 100644 --- a/benchmark/benchmarks.jl +++ b/benchmark/benchmarks.jl @@ -1,10 +1,14 @@ using BenchmarkTools -using Random: seed! -using ForwardDiff, Zygote, Flux +using Random: seed!, default_rng +using ForwardDiff, Zygote using TaylorSeries: Taylor1 using TaylorDiff -seed!(19260817) +rng = default_rng() +seed!(rng, 19260817) + +using Logging +Logging.disable_logging(Logging.Warn) include("scalar.jl") include("mlp.jl") diff --git a/benchmark/helper.jl b/benchmark/helper.jl deleted file mode 100644 index f73e53a..0000000 --- a/benchmark/helper.jl +++ /dev/null @@ -1,32 +0,0 @@ -struct BenchmarkContext - datetime::DateTime - commit::String - branch::String - tag::String -end - -dict(x) = Dict(name => lower(getfield(x, name)) for name in fieldnames(typeof(x))) - -lower(results::BenchmarkResults) = dict(results) -function lower(group::BenchmarkGroup) - Dict(:tags => group.tags, - :data => Dict(key => lower(value) for (key, value) in group.data)) -end -lower(trial::Trial) = lower(minimum(trial)) -lower(estimate::TrialEstimate) = dict(estimate) -lower(parameters::Parameters) = dict(parameters) -lower(context::BenchmarkContext) = dict(context) - -abstract type ContextProvider end - -struct Dummy <: ContextProvider end -provide_context(::Dummy) = BenchmarkContext(now(), "abcdef123456", "dummy", "dummy") - -struct Buildkite <: ContextProvider end -function provide_context(::Buildkite) - getenv(name::String) = String(strip(ENV[name])) - BenchmarkContext(now(), # datetime - getenv("BUILDKITE_COMMIT"), # commit - getenv("BUILDKITE_BRANCH"), # branch - getenv("BUILDKITE_TAG")) -end diff --git a/benchmark/pinn.jl b/benchmark/pinn.jl index 6aeba9a..4e8833b 100644 --- a/benchmark/pinn.jl +++ b/benchmark/pinn.jl @@ -1,3 +1,5 @@ +using Lux, Random, Zygote + const input = 2 const hidden = 16 @@ -5,9 +7,13 @@ model = Chain(Dense(input => hidden, exp), Dense(hidden => hidden, exp), Dense(hidden => 1), first) -trial(model, x) = x[1] * (1 - x[1]) * x[2] * (1 - x[2]) * model(x) + +ps, st = Lux.setup(rng, model) + +trial(model, x) = x[1] * (1 - x[1]) * x[2] * (1 - x[2]) * model(x, ps, st)[1] x = rand(Float32, input) +trial(model, x) function loss_by_finitediff(model, x) ε = cbrt(eps(Float32)) ε₁ = [ε, 0] diff --git a/benchmark/runbenchmarks.jl b/benchmark/runbenchmarks.jl index 517b7d9..5124499 100644 --- a/benchmark/runbenchmarks.jl +++ b/benchmark/runbenchmarks.jl @@ -8,9 +8,37 @@ import JSON: lower, json using Dates using HTTP: put -include("helper.jl") +struct BenchmarkContext + datetime::DateTime + commit::String + branch::String + tag::String +end + +dict(x) = Dict(name => lower(getfield(x, name)) for name in fieldnames(typeof(x))) + +lower(results::BenchmarkResults) = dict(results) +function lower(group::BenchmarkGroup) + Dict(:tags => group.tags, + :data => Dict(key => lower(value) for (key, value) in group.data)) +end +lower(trial::Trial) = lower(minimum(trial)) +lower(estimate::TrialEstimate) = dict(estimate) +lower(parameters::Parameters) = dict(parameters) +lower(context::BenchmarkContext) = dict(context) + +getenv(name::String) = String(strip(ENV[name])) + +context = if "BUILDKITE" in keys(ENV) + BenchmarkContext(now(), # datetime + getenv("BUILDKITE_COMMIT"), # commit + getenv("BUILDKITE_BRANCH"), # branch + getenv("BUILDKITE_TAG")) +else + BenchmarkContext(now(), "abcdef123456", "dummy", "dummy") +end +display(context) -context = provide_context(Dummy()) results = benchmarkpkg(TaylorDiff) (; benchmarkgroup, benchmarkconfig) = results reconstructed = Dict("context" => context, diff --git a/benchmark/scalar.jl b/benchmark/scalar.jl index 7ac47c3..767f688 100644 --- a/benchmark/scalar.jl +++ b/benchmark/scalar.jl @@ -14,7 +14,7 @@ function create_benchmark_scalar_function(f::F, x::T) where {F, T <: Number} taylordiff_group = BenchmarkGroup() Ns = [Val{order + 1}() for order in 1:9] for (index, N) in enumerate(Ns) - taylordiff_group[index] = @benchmarkable derivative($f, $x, $N) + taylordiff_group[index] = @benchmarkable derivative($f, $x, one($x), $N) end return BenchmarkGroup(["scalar"], "forwarddiff" => forwarddiff_group,