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Julia keeps allocations alive in presence of try/catch #2197

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IanButterworth opened this issue Dec 11, 2023 · 3 comments
Open

Julia keeps allocations alive in presence of try/catch #2197

IanButterworth opened this issue Dec 11, 2023 · 3 comments
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bug Something isn't working upstream Somebody else's problem.

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@IanButterworth
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IanButterworth commented Dec 11, 2023

Describe the bug

I have a case where the inclusion of a try-catch in a for loop is causing CUDA OOM.

Rather nastily the try-catch was actually introduced by a @info "epoch $epoch_num" log, which wraps the evaluation of the log message in a try-catch because of the interpolation. The issue doesn't happen for @info "epoch"

https://github.com/IanButterworth/julia/blob/61a36549f961eacd74d431f5e987f3e7f789c643/base/logging.jl#L344-L380

To reproduce

The Minimal Working Example (MWE) for this bug:

Instantiate https://github.com/IanButterworth/EfficientNet-Training/tree/main

This is with CUDA.jl dev-ed and logging added as suggested by @maleadt

julia> include("effnet_train.jl")

julia> @time train(limit=3, gpu_gc=false, gpu_stats=true)
[ Info: loading CIFAR-10 dataset
[ Info: loading EfficientNetv2 model
[ Info: starting training
Effective GPU memory usage: 99.55% (11.688 GiB/11.741 GiB)
Memory pool usage: 8.505 GiB (10.406 GiB reserved)
WARNING: CUDA memory allocation failed; attempting to free up memory...
... waiting for pending frees (freed 0 bytes)
... waiting for all pending frees (freed 0 bytes)
... running a quick GC (freed 8.292 GiB)
Effective GPU memory usage: 99.55% (11.688 GiB/11.741 GiB)
Memory pool usage: 8.492 GiB (10.406 GiB reserved)
training epoch 1/45   4%|███▊                                                                                           |  ETA: 0:00:09WARNING: CUDA memory allocation failed; attempting to free up memory...
... waiting for pending frees (freed 0 bytes)
... waiting for all pending frees (freed 0 bytes)
... running a quick GC (freed 8.279 GiB)
Effective GPU memory usage: 99.55% (11.688 GiB/11.741 GiB)
Memory pool usage: 8.492 GiB (10.406 GiB reserved)
training epoch 1/45   6%|█████▊                                                                                         |  ETA: 0:00:09WARNING: CUDA memory allocation failed; attempting to free up memory...
... waiting for pending frees (freed 0 bytes)
... waiting for all pending frees (freed 0 bytes)
... running a quick GC (freed 8.279 GiB)
Effective GPU memory usage: 99.54% (11.687 GiB/11.741 GiB)
Memory pool usage: 8.492 GiB (10.406 GiB reserved)
training epoch 1/45 100%|███████████████████████████████████████████████████████████████████████████████████████████████| Time: 0:00:00
[ Info: epoch 1 complete. Testing...
WARNING: CUDA memory allocation failed; attempting to free up memory...
... waiting for pending frees (freed 0 bytes)
... waiting for all pending frees (freed 0 bytes)
... running a quick GC (freed 9.974 GiB)
WARNING: CUDA memory allocation failed; attempting to free up memory...
... waiting for pending frees (freed 0 bytes)
... waiting for all pending frees (freed 0 bytes)
... running a quick GC (freed 9.917 GiB)
WARNING: CUDA memory allocation failed; attempting to free up memory...
... waiting for pending frees (freed 0 bytes)
WARNING: CUDA memory allocation failed; attempting to free up memory...
... waiting for pending frees (freed 0 bytes)
... waiting for all pending frees (freed 0 bytes)
... running a quick GC (freed 9.818 GiB)
WARNING: CUDA memory allocation failed; attempting to free up memory...
... waiting for pending frees (freed 0 bytes)
... waiting for all pending frees (freed 0 bytes)
... running a quick GC (freed 9.834 GiB)
[ Info: (train_loss = 2.303f0, train_acc = 0.1, test_loss = 2.303f0, test_acc = 0.099)
WARNING: CUDA memory allocation failed; attempting to free up memory...
... waiting for pending frees (freed 0 bytes)
WARNING: CUDA memory allocation failed; attempting to free up memory...
... waiting for pending frees (freed 0 bytes)
... waiting for all pending frees (freed 0 bytes)
... running a quick GC (freed 5.953 GiB)
Effective GPU memory usage: 99.54% (11.687 GiB/11.741 GiB)
Memory pool usage: 6.301 GiB (10.406 GiB reserved)
WARNING: CUDA memory allocation failed; attempting to free up memory...
... waiting for pending frees (freed 0 bytes)
WARNING: CUDA memory allocation failed; attempting to free up memory...
... waiting for pending frees (freed 0 bytes)
... waiting for all pending frees (freed 0 bytes)
... running a quick GC (freed 5.875 GiB)
WARNING: CUDA memory allocation failed; attempting to free up memory...
... waiting for pending frees (freed 0 bytes)
WARNING: CUDA memory allocation failed; attempting to free up memory...
... waiting for pending frees (freed 0 bytes)
... waiting for all pending frees (freed 0 bytes)
... running a quick GC (freed 3.002 GiB)
Effective GPU memory usage: 99.54% (11.687 GiB/11.741 GiB)
Memory pool usage: 5.703 GiB (10.406 GiB reserved)
training epoch 2/45   4%|███▊                                                                                           |  ETA: 0:00:09WARNING: CUDA memory allocation failed; attempting to free up memory...
... waiting for pending frees (freed 0 bytes)
... waiting for all pending frees (freed 0 bytes)
... running a quick GC (freed 5.240 GiB)
WARNING: CUDA memory allocation failed; attempting to free up memory...
... waiting for pending frees (freed 0 bytes)
WARNING: CUDA memory allocation failed; attempting to free up memory...
... waiting for pending frees (freed 0 bytes)
... waiting for all pending frees (freed 0 bytes)
... running a quick GC (freed 1.578 GiB)
WARNING: CUDA memory allocation failed; attempting to free up memory...
... waiting for pending frees (freed 0 bytes)
... waiting for all pending frees (freed 0 bytes)
... running a quick GC (freed 167.542 MiB)
... running a full GC (freed 11.719 MiB)
... releasing reserved memory (freed 0 bytes)

┌ Error: Out of GPU memory trying to allocate 128.000 MiB
│ Effective GPU memory usage: 99.54% (11.687 GiB/11.741 GiB)
│ Memory pool usage: 4.157 GiB (10.406 GiB reserved)
└ @ Main ~/Documents/GitHub/EfficientNet-Training/effnet_train.jl:104
  3.465019 seconds (2.09 M allocations: 1.532 GiB, 27.75% gc time)

The inner loop can be simplified to this reproducer

for epoch in 1:epochs
    for (x, y) in train_loader
        x = x |> device; y = y |> device
        gs, _ = gradient(model, x) do m, _x
            logitcrossentropy(m(_x), y)
        end
        # state, model = Optimisers.update(state, model, gs)
        model = Flux.Functors.fmap(copy, model; exclude = Optimisers.maywrite)
        state = Flux.Functors.fmap(copy, state; exclude = Optimisers.maywrite)
        @show CUDA.MemoryInfo().pool_used_bytes
    end
    try
        true
    catch
    end
end

Commenting out the try-catch (or the 2 loop @info logs in the original code), or will avoid the OOM entirely.

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Expected behavior

A clear and concise description of what you expected to happen.

No OOM, which is the case if you GC.gc() each loop (turn that on via train(limit=3, gpu_gc=true, gpu_stats=true)

Version info

Details on Julia:

julia> versioninfo()
Julia Version 1.9.4
Commit 8e5136fa297 (2023-11-14 08:46 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
  CPU: 32 × AMD Ryzen 9 5950X 16-Core Processor
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-14.0.6 (ORCJIT, znver3)
  Threads: 5 on 32 virtual cores

Details on CUDA:

CUDA runtime 12.3, artifact installation
CUDA driver 12.0
NVIDIA driver 525.147.5

CUDA libraries: 
- CUBLAS: 12.3.4
- CURAND: 10.3.4
- CUFFT: 11.0.12
- CUSOLVER: 11.5.4
- CUSPARSE: 12.2.0
- CUPTI: 21.0.0
- NVML: 12.0.0+525.147.5

Julia packages: 
- CUDA: 5.1.1
- CUDA_Driver_jll: 0.7.0+0
- CUDA_Runtime_jll: 0.10.1+0

Toolchain:
- Julia: 1.9.4
- LLVM: 14.0.6

1 device:
  0: NVIDIA GeForce RTX 3080 (sm_86, 10.301 GiB / 12.000 GiB available)

Additional context

Add any other context about the problem here.

CUDA.jl debug prints added

diff --git a/src/pool.jl b/src/pool.jl
index 9d476d591..4a134e6c5 100644
--- a/src/pool.jl
+++ b/src/pool.jl
@@ -363,25 +363,35 @@ function retry_reclaim(f, isfailed)
     state = active_state()
     is_stream_ordered = stream_ordered(state.device)

+    println(Core.stdout, "WARNING: CUDA memory allocation failed; attempting to free up memory...")
+
     phase = 1
     while true
+      before_memory = used_memory()
       if is_stream_ordered
         if phase == 1
+          print(Core.stdout, "... waiting for pending frees")
           synchronize(state.stream)
         elseif phase == 2
+          print(Core.stdout, "... waiting for all pending frees")
           device_synchronize()
         elseif phase == 3
+          print(Core.stdout, "... running a quick GC")
           GC.gc(false)
           device_synchronize()
         elseif phase == 4
+          print(Core.stdout, "... running a full GC")
           GC.gc(true)
           device_synchronize()
         elseif phase == 5
           # in case we had a release threshold configured
+          print(Core.stdout, "... releasing reserved memory")
           trim(memory_pool(state.device))
         else
           break
         end
+        after_memory = used_memory()
+        println(Core.stdout, " (freed $(Base.format_bytes(before_memory - after_memory)))")
       else
         if phase == 1
           GC.gc(false)
@IanButterworth IanButterworth added the bug Something isn't working label Dec 11, 2023
@IanButterworth
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@maleadt reported that in julia 1.10 on their setup the OOM happens sooner

❯ JULIA_CUDA_HARD_MEMORY_LIMIT=12GB jl --project effnet_train.jl
[ Info: loading CIFAR-10 dataset
[ Info: loading EfficientNetv2 model
[ Info: starting training

┌ Error: Out of GPU memory trying to allocate 4.578 GiB
│ Effective GPU memory usage: 24.97% (11.808 GiB/47.296 GiB)
│ Memory pool usage: 4.017 GiB (11.188 GiB reserved)
│ Memory limit: hard = 11.176 GiB
└ @ Main ~/Julia/tmp/EfficientNet-Training/effnet_train.jl:104

@IanButterworth
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I have been trying to look for differences in GC collections with GC logging on. On the left here is with the try-catch, on the right is without.
The GC operations seem to happen in the same sequence.
You can see pool_used_bytes jumps up on the left, and doesn't on the right, but on the right there's no big GC collect, which I was expecting to see

image

@maleadt maleadt changed the title CUDA OOM if loop contains a try-catch Julia keeps allocations alive in presence of try/catch Dec 12, 2023
@maleadt maleadt added the upstream Somebody else's problem. label Dec 12, 2023
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maleadt commented Dec 12, 2023

On Slack, we determined that this is likely due to objects being kept alive in upsilon nodes due to the try/catch. Unclear why calling GC.gc helps for that, but this does look like a Julia bug...

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