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Problems with OpenCV and julia 1.11.0 #48

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stefanocovino opened this issue Oct 14, 2024 · 6 comments
Closed

Problems with OpenCV and julia 1.11.0 #48

stefanocovino opened this issue Oct 14, 2024 · 6 comments

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@stefanocovino
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Dear friends,

I have problems in installing OpenCV on a linux (debian) platform and julia 1.11.0. This is the error log I get:

julia> err
PkgPrecompileError: The following 1 direct dependency failed to precompile:

OpenCV

Failed to precompile OpenCV [f878e3a2-a245-4720-8660-60795d644f2a] to "/home/stefanocovino/.julia/compiled/v1.11/OpenCV/jl_Mj1Y8s".
ERROR: LoadError: InitError: could not load library "/home/stefanocovino/.julia/artifacts/fbe819efdc02977e6bc7cabfab4fb33665dc17d9/lib/libcxxwrap_julia.so"
/home/stefanocovino/.julia/artifacts/fbe819efdc02977e6bc7cabfab4fb33665dc17d9/lib/libcxxwrap_julia.so: undefined symbol: small_typeof, version JL_LIBJULIA_1.11
Stacktrace:
[1] dlopen(s::String, flags::UInt32; throw_error::Bool)
@ Base.Libc.Libdl ./libdl.jl:120
[2] dlopen(s::String, flags::UInt32)
@ Base.Libc.Libdl ./libdl.jl:119
[3] macro expansion
@ ~/.julia/packages/JLLWrappers/inPJn/src/products/library_generators.jl:63 [inlined]
[4] init()
@ libcxxwrap_julia_jll ~/.julia/packages/libcxxwrap_julia_jll/zmDeI/src/wrappers/x86_64-linux-gnu-cxx11-julia_version+1.11.0.jl:9
[5] run_module_init(mod::Module, i::Int64)
@ Base ./loading.jl:1336
[6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)
@ Base ./loading.jl:1324
[7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::String, depmods::Vector{Any}, ignore_native::Nothing; register::Bool)
@ Base ./loading.jl:1213
[8] _include_from_serialized (repeats 2 times)
@ ./loading.jl:1169 [inlined]
[9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})
@ Base ./loading.jl:1975
[10] _require(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:2435
[11] __require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2300
[12] #invoke_in_world#3
@ ./essentials.jl:1088 [inlined]
[13] invoke_in_world
@ ./essentials.jl:1085 [inlined]
[14] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2287
[15] macro expansion
@ ./loading.jl:2226 [inlined]
[16] macro expansion
@ ./lock.jl:273 [inlined]
[17] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:2183
[18] #invoke_in_world#3
@ ./essentials.jl:1088 [inlined]
[19] invoke_in_world
@ ./essentials.jl:1085 [inlined]
[20] require(into::Module, mod::Symbol)
@ Base ./loading.jl:2176
[21] include(mod::Module, _path::String)
@ Base ./Base.jl:557
[22] top-level scope
@ ~/.julia/packages/JLLWrappers/inPJn/src/toplevel_generators.jl:192
[23] include
@ ./Base.jl:557 [inlined]
[24] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
@ Base ./loading.jl:2806
[25] top-level scope
@ stdin:4
during initialization of module libcxxwrap_julia_jll
in expression starting at /home/stefanocovino/.julia/packages/OpenCV_jll/Hfsh1/src/wrappers/x86_64-linux-gnu-cxx11-julia_version+1.11.0.jl:6
in expression starting at /home/stefanocovino/.julia/packages/OpenCV_jll/Hfsh1/src/OpenCV_jll.jl:2
in expression starting at stdin:4
ERROR: LoadError: Failed to precompile OpenCV_jll [33b9d88c-85f9-5d73-bd91-4e2b95a9aa0b] to "/home/stefanocovino/.julia/compiled/v1.11/OpenCV_jll/jl_54XHqw".
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64})
@ Base ./loading.jl:3089
[3] (::Base.var"#1081#1082"{Base.PkgId})()
@ Base ./loading.jl:2477
[4] mkpidlock(f::Base.var"#1081#1082"{Base.PkgId}, at::String, pid::Int32; kwopts::@kwargs{stale_age::Int64, wait::Bool})
@ FileWatching.Pidfile ~/.julia/juliaup/julia-1.11.0+0.x64.linux.gnu/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95
[5] #mkpidlock#6
@ ~/.julia/juliaup/julia-1.11.0+0.x64.linux.gnu/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined]
[6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@kwargs{stale_age::Int64})
@ FileWatching.Pidfile ~/.julia/juliaup/julia-1.11.0+0.x64.linux.gnu/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116
[7] #invokelatest#2
@ ./essentials.jl:1056 [inlined]
[8] invokelatest
@ ./essentials.jl:1051 [inlined]
[9] maybe_cachefile_lock(f::Base.var"#1081#1082"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
@ Base ./loading.jl:3613
[10] maybe_cachefile_lock
@ ./loading.jl:3610 [inlined]
[11] _require(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:2473
[12] __require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2300
[13] #invoke_in_world#3
@ ./essentials.jl:1088 [inlined]
[14] invoke_in_world
@ ./essentials.jl:1085 [inlined]
[15] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2287
[16] macro expansion
@ ./loading.jl:2226 [inlined]
[17] macro expansion
@ ./lock.jl:273 [inlined]
[18] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:2183
[19] #invoke_in_world#3
@ ./essentials.jl:1088 [inlined]
[20] invoke_in_world
@ ./essentials.jl:1085 [inlined]
[21] require(into::Module, mod::Symbol)
@ Base ./loading.jl:2176
[22] include
@ ./Base.jl:557 [inlined]
[23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
@ Base ./loading.jl:2806
[24] top-level scope
@ stdin:4
in expression starting at /home/stefanocovino/.julia/packages/OpenCV/2FyNG/src/OpenCV.jl:1
in expression starting at stdin:


Hope it hekps in identyfing the problem.

Thanks.

Stefanoi

@bencardoen
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Same here, including on 1.10.5, the Cxxwrap dependency fails. The relevant trace is

ERROR: LoadError: InitError: could not load library "/home/bcardoen/.julia/artifacts/fbe819efdc02977e6bc7cabfab4fb33665dc17d9/lib/libcxxwrap_julia.so"
/home/bcardoen/.julia/artifacts/fbe819efdc02977e6bc7cabfab4fb33665dc17d9/lib/libcxxwrap_julia.so: undefined symbol: small_typeof, version JL_LIBJULIA_1.11

@ViralBShah
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Contributor

Fixed in #47. Should register a new version soon.

@ViralBShah
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Contributor

Would be nice if you can try the dev version and verify.

@bencardoen
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bencardoen commented Oct 24, 2024

@ViralBShah nvm

juliaup add 1.11
julia +1.11
julia
] dev OpenCV
using OpenCV

installs but crashes on precompilation (Fedora 40). Perhaps I'm doing something wrong?

(@v1.11) pkg> status
Status `~/.julia/environments/v1.11/Project.toml`
  [f878e3a2] OpenCV v4.6.0 `~/.julia/dev/OpenCV`

Full trace

(@v1.11) pkg> dev OpenCV
     Cloning git-repo `https://github.com/JuliaImages/OpenCV.jl.git`
   Resolving package versions...
   Installed CxxWrap ────────────── v0.16.0
   Installed libcxxwrap_julia_jll ─ v0.13.2+0
  Downloaded artifact: OpenCV
  Downloaded artifact: libcxxwrap_julia
    Updating `~/.julia/environments/v1.11/Project.toml`
  [f878e3a2] + OpenCV v4.6.0 `~/.julia/dev/OpenCV`
    Updating `~/.julia/environments/v1.11/Manifest.toml`
  [1f15a43c] + CxxWrap v0.16.0
  [692b3bcd] + JLLWrappers v1.6.1
  [1914dd2f] + MacroTools v0.5.13
  [f878e3a2] + OpenCV v4.6.0 `~/.julia/dev/OpenCV`
  [21216c6a] + Preferences v1.4.3
  [6e34b625] + Bzip2_jll v1.0.8+2
  [2702e6a9] + EpollShim_jll v0.0.20230411+0
  [2e619515] + Expat_jll v2.6.2+0
  [a3f928ae] + Fontconfig_jll v2.13.96+0
  [d7e528f0] + FreeType2_jll v2.13.2+0
  [78b55507] + Gettext_jll v0.21.0+0
  [7746bdde] + Glib_jll v2.80.5+0
⌅ [e9f186c6] + Libffi_jll v3.2.2+1
  [d4300ac3] + Libgcrypt_jll v1.8.11+0
  [7e76a0d4] + Libglvnd_jll v1.6.0+0
  [7add5ba3] + Libgpg_error_jll v1.49.0+0
  [94ce4f54] + Libiconv_jll v1.17.0+0
  [4b2f31a3] + Libmount_jll v2.40.1+0
  [38a345b3] + Libuuid_jll v2.40.1+0
  [33b9d88c] + OpenCV_jll v4.6.0+2
⌅ [458c3c95] + OpenSSL_jll v1.1.23+1
  [ea2cea3b] + Qt5Base_jll v5.15.3+2
  [a2964d1f] + Wayland_jll v1.21.0+1
  [2381bf8a] + Wayland_protocols_jll v1.31.0+0
  [02c8fc9c] + XML2_jll v2.13.3+0
  [aed1982a] + XSLT_jll v1.1.41+0
  [4f6342f7] + Xorg_libX11_jll v1.8.6+0
  [0c0b7dd1] + Xorg_libXau_jll v1.0.11+0
  [a3789734] + Xorg_libXdmcp_jll v1.1.4+0
  [1082639a] + Xorg_libXext_jll v1.3.6+0
  [14d82f49] + Xorg_libpthread_stubs_jll v0.1.1+0
  [c7cfdc94] + Xorg_libxcb_jll v1.17.0+0
  [cc61e674] + Xorg_libxkbfile_jll v1.1.2+0
  [12413925] + Xorg_xcb_util_image_jll v0.4.0+1
  [2def613f] + Xorg_xcb_util_jll v0.4.0+1
  [975044d2] + Xorg_xcb_util_keysyms_jll v0.4.0+1
  [0d47668e] + Xorg_xcb_util_renderutil_jll v0.3.9+1
  [c22f9ab0] + Xorg_xcb_util_wm_jll v0.4.1+1
  [35661453] + Xorg_xkbcomp_jll v1.4.6+0
  [33bec58e] + Xorg_xkeyboard_config_jll v2.39.0+0
  [c5fb5394] + Xorg_xtrans_jll v1.5.0+0
  [3eaa8342] + libcxxwrap_julia_jll v0.13.2+0
  [d8fb68d0] + xkbcommon_jll v1.4.1+1
  [0dad84c5] + ArgTools v1.1.2
  [56f22d72] + Artifacts v1.11.0
  [2a0f44e3] + Base64 v1.11.0
  [ade2ca70] + Dates v1.11.0
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching v1.11.0
  [b27032c2] + LibCURL v0.6.4
  [76f85450] + LibGit2 v1.11.0
  [8f399da3] + Libdl v1.11.0
  [56ddb016] + Logging v1.11.0
  [d6f4376e] + Markdown v1.11.0
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.11.0
  [de0858da] + Printf v1.11.0
  [9a3f8284] + Random v1.11.0
  [ea8e919c] + SHA v0.7.0
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [cf7118a7] + UUIDs v1.11.0
  [4ec0a83e] + Unicode v1.11.0
  [e66e0078] + CompilerSupportLibraries_jll v1.1.1+0
  [deac9b47] + LibCURL_jll v8.6.0+0
  [e37daf67] + LibGit2_jll v1.7.2+0
  [29816b5a] + LibSSH2_jll v1.11.0+1
  [c8ffd9c3] + MbedTLS_jll v2.28.6+0
  [14a3606d] + MozillaCACerts_jll v2023.12.12
  [efcefdf7] + PCRE2_jll v10.42.0+1
  [83775a58] + Zlib_jll v1.2.13+1
  [8e850ede] + nghttp2_jll v1.59.0+0
  [3f19e933] + p7zip_jll v17.4.0+2
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

julia> using OpenCV
Precompiling OpenCV...
Info Given OpenCV was explicitly requested, output will be shown live 
ERROR: LoadError: InitError: could not load library "/home/bcardoen/.julia/artifacts/55c9720fa4f3a61012a2311bfcf0ba4e66405dea/lib/libopencv_julia.so"
/home/bcardoen/.julia/artifacts/55c9720fa4f3a61012a2311bfcf0ba4e66405dea/lib/libopencv_julia.so: undefined symbol: small_typeof, version JL_LIBJULIA_1.11
Stacktrace:
  [1] dlopen(s::String, flags::UInt32; throw_error::Bool)
    @ Base.Libc.Libdl ./libdl.jl:120
  [2] dlopen(s::String, flags::UInt32)
    @ Base.Libc.Libdl ./libdl.jl:119
  [3] macro expansion
    @ ~/.julia/packages/JLLWrappers/jXOYx/src/products/library_generators.jl:63 [inlined]
  [4] __init__()
    @ OpenCV_jll ~/.julia/packages/OpenCV_jll/Hfsh1/src/wrappers/x86_64-linux-gnu-cxx11-julia_version+1.11.0.jl:78
  [5] run_module_init(mod::Module, i::Int64)
    @ Base ./loading.jl:1336
  [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)
    @ Base ./loading.jl:1324
  [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::String, depmods::Vector{Any}, ignore_native::Nothing; register::Bool)
    @ Base ./loading.jl:1213
  [8] _include_from_serialized (repeats 2 times)
    @ ./loading.jl:1169 [inlined]
  [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})
    @ Base ./loading.jl:1985
 [10] _require(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2450
 [11] __require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2315
 [12] #invoke_in_world#3
    @ ./essentials.jl:1089 [inlined]
 [13] invoke_in_world
    @ ./essentials.jl:1086 [inlined]
 [14] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2302
 [15] macro expansion
    @ ./loading.jl:2241 [inlined]
 [16] macro expansion
    @ ./lock.jl:273 [inlined]
 [17] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2198
 [18] #invoke_in_world#3
    @ ./essentials.jl:1089 [inlined]
 [19] invoke_in_world
    @ ./essentials.jl:1086 [inlined]
 [20] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2191
 [21] include
    @ ./Base.jl:557 [inlined]
 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2790
 [23] top-level scope
    @ stdin:5
during initialization of module OpenCV_jll
in expression starting at /home/bcardoen/.julia/dev/OpenCV/src/OpenCV.jl:1
in expression starting at stdin:5
  ✗ OpenCV
  42 dependencies successfully precompiled in 16 seconds. 25 already precompiled.

ERROR: The following 1 direct dependency failed to precompile:

OpenCV 

Failed to precompile OpenCV [f878e3a2-a245-4720-8660-60795d644f2a] to "/home/bcardoen/.julia/compiled/v1.11/OpenCV/jl_7W5cj8".
ERROR: LoadError: InitError: could not load library "/home/bcardoen/.julia/artifacts/55c9720fa4f3a61012a2311bfcf0ba4e66405dea/lib/libopencv_julia.so"
/home/bcardoen/.julia/artifacts/55c9720fa4f3a61012a2311bfcf0ba4e66405dea/lib/libopencv_julia.so: undefined symbol: small_typeof, version JL_LIBJULIA_1.11
Stacktrace:
  [1] dlopen(s::String, flags::UInt32; throw_error::Bool)
    @ Base.Libc.Libdl ./libdl.jl:120
  [2] dlopen(s::String, flags::UInt32)
    @ Base.Libc.Libdl ./libdl.jl:119
  [3] macro expansion
    @ ~/.julia/packages/JLLWrappers/jXOYx/src/products/library_generators.jl:63 [inlined]
  [4] __init__()
    @ OpenCV_jll ~/.julia/packages/OpenCV_jll/Hfsh1/src/wrappers/x86_64-linux-gnu-cxx11-julia_version+1.11.0.jl:78
  [5] run_module_init(mod::Module, i::Int64)
    @ Base ./loading.jl:1336
  [6] register_restored_modules(sv::Core.SimpleVector, pkg::Base.PkgId, path::String)
    @ Base ./loading.jl:1324
  [7] _include_from_serialized(pkg::Base.PkgId, path::String, ocachepath::String, depmods::Vector{Any}, ignore_native::Nothing; register::Bool)
    @ Base ./loading.jl:1213
  [8] _include_from_serialized (repeats 2 times)
    @ ./loading.jl:1169 [inlined]
  [9] _require_search_from_serialized(pkg::Base.PkgId, sourcepath::String, build_id::UInt128, stalecheck::Bool; reasons::Dict{String, Int64}, DEPOT_PATH::Vector{String})
    @ Base ./loading.jl:1985
 [10] _require(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:2450
 [11] __require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2315
 [12] #invoke_in_world#3
    @ ./essentials.jl:1089 [inlined]
 [13] invoke_in_world
    @ ./essentials.jl:1086 [inlined]
 [14] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:2302
 [15] macro expansion
    @ ./loading.jl:2241 [inlined]
 [16] macro expansion
    @ ./lock.jl:273 [inlined]
 [17] __require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2198
 [18] #invoke_in_world#3
    @ ./essentials.jl:1089 [inlined]
 [19] invoke_in_world
    @ ./essentials.jl:1086 [inlined]
 [20] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:2191
 [21] include
    @ ./Base.jl:557 [inlined]
 [22] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2790
 [23] top-level scope
    @ stdin:5
during initialization of module OpenCV_jll
in expression starting at /home/bcardoen/.julia/dev/OpenCV/src/OpenCV.jl:1
in expression starting at stdin:

@bencardoen
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@ViralBShah please ignore the above, I forgot to first update registry. With an

] update

it precompiles fine. Thank you for resolving this, and apologies for the noise.

@MendeBadra
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Can confirm. OpenCV.jl dev can be precompiled in Julia 1.11 on ubuntu 22.04 pc

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