v1.3.1

minor bug fix on line 163 in MCMC-main, for plotting ensemble tree

v1.3.0

tumor purity estimate is now optional
capability to include estimate of copy number cellular fraction in input
option to add major_integer_copy_number to input
option to select desired number of subclones

v1.2.0.1

Fixed version numbering and updated maintainer information.

v1.2: Merge pull request #11 from KarchinLab/staging

Added option to filter out variants with low read count and/or low VAF.

v1.1: Merge pull request #10 from KarchinLab/staging

Minor bug fixes and new functionality.
Users can now provide their input data in a csv file.
Added functionality to estimate mutation multiplicity.
Added option to choose whether or not to use sample-presence mutation partitioning.