Dockerfile

FROM karrlab/wc_env_dependencies

# install and configure software and examples
ARG python_version=3.7
RUN git clone https://github.com/KarrLab/wc_sandbox.git \
    && cd /root/wc_sandbox \
    && pip${python_version} install -U pip \
    && pip${python_version} install -U git+https://github.com/KarrLab/pkg_utils.git#egg=pkg_utils \
    && pip${python_version} install -r .circleci/requirements.txt \
    && pip${python_version} install -e . \
    \
    && jupyter contrib nbextension install \
    && jupyter nbextensions_configurator disable \
    && jupyter nbextension enable varInspector/main \
    && jupyter nbextension enable toc2/main \
    && jupyter nbextension enable collapsible_headings/main \
    && jupyter nbextension enable equation-numbering/main \
    && jupyter nbextension enable codefolding/main \
    && jupyter nbextension enable scratchpad/main \
    && jupyter nbextension enable tree-filter/index \
    && jupyter nbextension enable printview/main \
    && jupyter nbextension disable contrib_nbextensions_help_item/main \
    \
    && cp -R wc_sandbox/assets/.jupyter/* ~/.jupyter \
    && cp wc_sandbox/assets/favicon.ico /usr/local/lib/python${python_version}/site-packages/notebook/static/base/images/favicon.ico \
    \
    && wc-sandbox install-packages \
    && wc-sandbox get-notebooks

# setup entry point
CMD jupyter notebook \
        --allow-root \
        --ip=0.0.0.0 \
        --port $PORT \
        --no-browser \
        --notebook-dir=/root/.wc/wc_sandbox/notebooks \
        --NotebookApp.password= \
        --NotebookApp.password_required=False \
        --NotebookApp.allow_password_change=False \
        --NotebookApp.token=

# copy licenses
COPY wc_sandbox/assets/licenses/chemaxon.cxl /root/.chemaxon/license.cxl