python-test-conda.yml

name: Unit tests without external tools

on:
  push:
    branches: [ main, develop ]
  pull_request:
    branches: [ main, develop ]

jobs:
  tests:
    strategy:
      matrix:
        platform: [ubuntu-latest, macos-latest]
        python-version: [3.7]
    runs-on: ${{ matrix.platform }}

    steps:
    - uses: actions/checkout@v4
    - name: Set conda package directory
      run: |
        mkdir /tmp/condapkgs
        echo "CONDA_PKGS_DIRS=/tmp/condapkgs" >> $GITHUB_ENV
    - name: Set up Python ${{ matrix.python-version }}
      run: |
        $CONDA/bin/conda create -p /tmp/condaenv python==${{ matrix.python-version }}'.*' setuptools"==52.0" protobuf"<=3.20.1"
    - name: Activate conda environment
      run: |
        echo "/tmp/condaenv/bin" >> $GITHUB_PATH
        export PATH="/tmp/condaenv/bin:$PATH"
    - name: Install epytope
      run: |
        pip install .
    - name: Install Test dependencies
      run: conda install -p /tmp/condaenv -c conda-forge -c bioconda nose nose-exclude glpk
    - name: Run Tests
      run: nosetests --exclude-dir=epytope/test/external epytope