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Prepare release 3.4.0 #97

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Dec 15, 2023
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Prepare release 3.4.0 #97

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6b5c354
prepare release 3.3.2
jonasscheid Dec 9, 2023
94c37b2
clean epp tutorial
jonasscheid Dec 9, 2023
dfa159a
Update CHANGELOG.md
jonasscheid Dec 13, 2023
1cbd169
Update CHANGELOG.md
jonasscheid Dec 13, 2023
6512e8a
Update setup.py
jonasscheid Dec 13, 2023
2d7c73a
Update setup.py
jonasscheid Dec 13, 2023
ce31c81
Update README.md
jonasscheid Dec 13, 2023
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13 changes: 13 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -3,6 +3,19 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## v3.4.0 - 2023-12-12

### `Added`

- [#93](https://github.com/KohlbacherLab/epytope/pull/93) Added NetMHCIIpan version 4.2 interface [#92](https://github.com/KohlbacherLab/epytope/issues/92)
- [#96](https://github.com/KohlbacherLab/epytope/pull/96) Added NetMHCIIpan version 4.3 interface [#95](https://github.com/KohlbacherLab/epytope/issues/95)

### `Changed`

### `Fixed`

- [#93](https://github.com/KohlbacherLab/epytope/pull/93) Fixed length restriction of NetMHCIIpan interfaces [#91](https://github.com/KohlbacherLab/epytope/issues/91)

## v3.3.1 - 2023-04-25

### `Added`
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2 changes: 1 addition & 1 deletion README.md
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Expand Up @@ -63,7 +63,7 @@ Currently **epytope** provides implementations of several prediction methods or
- [NetMHC](https://pubmed.ncbi.nlm.nih.gov/26515819/) 3.0, 3.4, 4.0
- [NetMHCII](https://pubmed.ncbi.nlm.nih.gov/29315598/) 2.2, 2.3
- [NetMHCpan](https://pubmed.ncbi.nlm.nih.gov/28978689/) 2.4, 2.8, 3.0, 4.0, 4.1
- [NetMHCIIpan](https://pubmed.ncbi.nlm.nih.gov/32406916/) 3.0, 3.1, 4.0, 4.1
- [NetMHCIIpan](https://pubmed.ncbi.nlm.nih.gov/38000035/) 3.0, 3.1, 4.0, 4.1, 4.2, 4.3
- [PickPocket](https://pubmed.ncbi.nlm.nih.gov/19297351/) 1.1
- [NetCTLpan](https://pubmed.ncbi.nlm.nih.gov/20379710/) 1.1
- Epitope Selection
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6 changes: 3 additions & 3 deletions epytope/tutorials/EpitopePrediction.ipynb
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"output_type": "stream",
"text": [
"netmhc 3.0a,3.4,4.0\n",
"netmhcpan 2.4,2.8,3.0,4.0\n",
"netmhcpan 2.4,2.8,3.0,4.0,4.1\n",
"netmhcstabpan 1.0\n",
"netmhcii 2.2\n",
"netmhciipan 3.0,3.1\n",
"netmhciipan 3.0,3.1,4.0,4.1,4.2,4.3\n",
"pickpocket 1.1\n",
"netctlpan 1.1\n",
"syfpeithi 1.0\n",
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"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
"version": "3.6.13"
"version": "3.7.12"
}
},
"nbformat": 4,
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8 changes: 4 additions & 4 deletions setup.py
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Expand Up @@ -21,7 +21,7 @@
name='epytope',

# Version:
version='3.3.1',
version='3.4.0',

description='A Framework for Epitope Detection and Vaccine Design',
long_description=long_description,
Expand All @@ -32,11 +32,11 @@

# Author details
author='Benjamin Schubert, Mathias Walzer, Christopher Mohr, Leon Kuchenbecker',
author_email='[email protected], [email protected], [email protected], [email protected] ',
author_email='[email protected], [email protected], [email protected], [email protected] ',

# maintainer details
maintainer='Christopher Mohr',
maintainer_email='christopher.mohr@uni-tuebingen.de',
maintainer='Christopher Mohr, Jonas Scheid',
maintainer_email='[email protected], jonas.scheid@uni-tuebingen.de',

# Choose your license
license='BSD',
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