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XGMML download not working #132

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ErdaradunGaztea opened this issue Jun 30, 2022 · 0 comments
Open

XGMML download not working #132

ErdaradunGaztea opened this issue Jun 30, 2022 · 0 comments
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@ErdaradunGaztea
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There's a problem with edge data containing sequences in tibble format. Turns out BioNet::saveNetwork(type = "XGMML") calls BioNet:::.XGMML.edges(), which in turn saves edge attributes in text; and this text requires string/integer/real values, not tibbles. Would reversing the parsing made to the sequence columns before saving with BioNet work? This would change

graph_from_data_frame(
  edges[["table"]],
  vertices = ag_data_nodes()
)

to something like

graph_from_data_frame(
  deparse_chains(edges[["table"]]),
  vertices = ag_data_nodes()
)
@ErdaradunGaztea ErdaradunGaztea added the bug Something isn't working label Jun 30, 2022
@ErdaradunGaztea ErdaradunGaztea added this to the Summer improvement milestone Jun 30, 2022
@ErdaradunGaztea ErdaradunGaztea self-assigned this Jun 30, 2022
@ErdaradunGaztea ErdaradunGaztea pinned this issue Jun 30, 2022
@ErdaradunGaztea ErdaradunGaztea unpinned this issue Jul 1, 2022
@ErdaradunGaztea ErdaradunGaztea pinned this issue Jul 1, 2022
@ErdaradunGaztea ErdaradunGaztea unpinned this issue Jul 13, 2022
@ErdaradunGaztea ErdaradunGaztea pinned this issue Jul 13, 2022
@ErdaradunGaztea ErdaradunGaztea unpinned this issue Jul 21, 2022
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