From bf033c4035fa325dae83a39d3ba3503927372c11 Mon Sep 17 00:00:00 2001 From: rubenzorrilla Date: Fri, 19 Jul 2024 16:41:17 +0200 Subject: [PATCH 1/2] Fix traction sign in embedded solver --- .../partitioned_embedded_fsi_base_solver.py | 10 ++++++++-- 1 file changed, 8 insertions(+), 2 deletions(-) diff --git a/applications/FSIApplication/python_scripts/partitioned_embedded_fsi_base_solver.py b/applications/FSIApplication/python_scripts/partitioned_embedded_fsi_base_solver.py index 08cb490090b5..465a35302fe6 100644 --- a/applications/FSIApplication/python_scripts/partitioned_embedded_fsi_base_solver.py +++ b/applications/FSIApplication/python_scripts/partitioned_embedded_fsi_base_solver.py @@ -358,8 +358,11 @@ def _MapFluidInterfaceTraction(self): # Convert the pressure scalar load to a traction vector one # This is required in the IBQN case as the structure and fluid interface residual sizes must match + # Note that we do not swap the traction sign as the normal considered is the positive interface outwards one + # As a difference to the standard body-fitted solver, which uses the fluid reaction that points to the fluid + # the positive interface outwards normal alredy points to the structure if self._GetConvergenceAccelerator().IsBlockNewton(): - swap_traction_sign = True + swap_traction_sign = False self._GetPartitionedFSIUtilities().CalculateTractionFromPressureValues( self._GetFSICouplingInterfaceStructure().GetInterfaceModelPart(), KratosMultiphysics.POSITIVE_FACE_PRESSURE, @@ -395,7 +398,10 @@ def _MapFluidInterfaceTraction(self): 0) # Convert the pressure scalar load to a traction vector one - swap_traction_sign = True + # Note that we do not swap the traction sign as the normal considered is the positive interface outwards one + # As a difference to the standard body-fitted solver, which uses the fluid reaction that points to the fluid + # the positive interface outwards normal alredy points to the structure + swap_traction_sign = False self._GetPartitionedFSIUtilities().CalculateTractionFromPressureValues( self._GetFSICouplingInterfaceStructure().GetInterfaceModelPart(), KratosMultiphysics.POSITIVE_FACE_PRESSURE, From 84ecfdb4426758c1ebaeb9c498512e2a52ce3066 Mon Sep 17 00:00:00 2001 From: rubenzorrilla Date: Sat, 20 Jul 2024 09:38:04 +0200 Subject: [PATCH 2/2] Testing --- .../FSIApplication/tests/embedded_fsi_test.py | 159 + .../embedded_fsi_test/FluidMaterials.json | 20 + .../embedded_fsi_test/ProjectParameters.json | 190 + .../StructuralMaterialsVolumetric.json | 17 + .../embedded_fsi_test_fluid.mdpa | 798 ++++ ...mbedded_fsi_test_structure_volumetric.mdpa | 551 +++ ...tructure_volumetric_IBQN_MVQN_results.json | 4004 +++++++++++++++++ ...est_structure_volumetric_MVQN_results.json | 4004 +++++++++++++++++ .../tests/test_FSIApplication.py | 2 + 9 files changed, 9745 insertions(+) create mode 100644 applications/FSIApplication/tests/embedded_fsi_test.py create mode 100644 applications/FSIApplication/tests/embedded_fsi_test/FluidMaterials.json create mode 100644 applications/FSIApplication/tests/embedded_fsi_test/ProjectParameters.json create mode 100644 applications/FSIApplication/tests/embedded_fsi_test/StructuralMaterialsVolumetric.json create mode 100644 applications/FSIApplication/tests/embedded_fsi_test/embedded_fsi_test_fluid.mdpa create mode 100644 applications/FSIApplication/tests/embedded_fsi_test/embedded_fsi_test_structure_volumetric.mdpa create mode 100644 applications/FSIApplication/tests/embedded_fsi_test/embedded_fsi_test_structure_volumetric_IBQN_MVQN_results.json create mode 100644 applications/FSIApplication/tests/embedded_fsi_test/embedded_fsi_test_structure_volumetric_MVQN_results.json diff --git a/applications/FSIApplication/tests/embedded_fsi_test.py b/applications/FSIApplication/tests/embedded_fsi_test.py new file mode 100644 index 000000000000..a15aa6a88e22 --- /dev/null +++ b/applications/FSIApplication/tests/embedded_fsi_test.py @@ -0,0 +1,159 @@ +import os +import copy + +import KratosMultiphysics +import KratosMultiphysics.KratosUnittest as KratosUnittest + +from KratosMultiphysics.FSIApplication import fsi_analysis +from KratosMultiphysics.kratos_utilities import DeleteTimeFiles +from KratosMultiphysics.kratos_utilities import DeleteFilesEndingWith + +class WorkFolderScope: + def __init__(self, work_folder): + self.currentPath = os.getcwd() + self.scope = os.path.abspath(os.path.join(os.path.dirname(os.path.realpath(__file__)),work_folder)) + + def __enter__(self): + os.chdir(self.scope) + + def __exit__(self, type, value, traceback): + os.chdir(self.currentPath) + +class EmbeddedFsiTest(KratosUnittest.TestCase): + + def setUp(self): + self.print_output = False + self.reference_values_check = True + self.reference_values_output = False + self.check_relative_tolerance = 1.0e-6 + self.check_absolute_tolerance = 1.0e-8 + self.work_folder = "embedded_fsi_test" + self.settings = "ProjectParameters.json" + + def tearDown(self): + DeleteTimeFiles(self.work_folder) + if not self.print_output: + DeleteFilesEndingWith(self.work_folder, ".post.bin") + DeleteFilesEndingWith(self.work_folder, ".post.lst") + + def testEmbeddedVolumetricMVQN(self): + self.structure_filename = "embedded_fsi_test_structure_volumetric" + self.convergence_accelerator = "MVQN" + self.check_variables_list = ["DISPLACEMENT_X", "DISPLACEMENT_Y", "POSITIVE_FACE_PRESSURE"] + + with WorkFolderScope(self.work_folder): + model = KratosMultiphysics.Model() + parameter_file = open(self.settings, 'r') + self.parameters = KratosMultiphysics.Parameters(parameter_file.read()) + self._CustomizeProjectParameters() + fsi_analysis.FsiAnalysis(model, self.parameters).Run() + + def testEmbeddedVolumetricIBQNMVQN(self): + self.structure_filename = "embedded_fsi_test_structure_volumetric" + self.convergence_accelerator = "IBQN_MVQN" + self.check_variables_list = ["DISPLACEMENT_X", "DISPLACEMENT_Y", "POSITIVE_FACE_PRESSURE"] + + with WorkFolderScope(self.work_folder): + model = KratosMultiphysics.Model() + parameter_file = open(self.settings, 'r') + self.parameters = KratosMultiphysics.Parameters(parameter_file.read()) + self._CustomizeProjectParameters() + fsi_analysis.FsiAnalysis(model, self.parameters).Run() + + def _CustomizeProjectParameters(self): + self.parameters["solver_settings"]["structure_solver_settings"]["model_import_settings"]["input_filename"].SetString(self.structure_filename) + self.parameters["solver_settings"]["coupling_settings"]["coupling_strategy_settings"]["solver_type"].SetString(self.convergence_accelerator) + + if self.print_output: + self._AddOutput() + + if self.reference_values_output: + self._AddReferenceValuesOutput() + + if self.reference_values_check: + self._AddReferenceValuesCheck() + + def _AddOutput(self): + gid_output_settings = KratosMultiphysics.Parameters("""{ + "python_module" : "gid_output_process", + "kratos_module" : "KratosMultiphysics", + "process_name" : "GiDOutputProcess", + "Parameters" : { + "model_part_name" : "TO_BE_DEFINED", + "output_name" : "TO_BE_DEFINED", + "postprocess_parameters" : { + "result_file_configuration" : { + "gidpost_flags" : { + "GiDPostMode" : "GiD_PostBinary", + "WriteDeformedMeshFlag" : "WriteDeformed", + "WriteConditionsFlag" : "WriteConditions", + "MultiFileFlag" : "SingleFile" + }, + "file_label" : "time", + "output_control_type" : "step", + "output_interval" : 1, + "body_output" : true, + "node_output" : false, + "skin_output" : false, + "plane_output" : [], + "nodal_results" : [], + "gauss_point_results" : [] + }, + "point_data_configuration" : [] + } + } + }""") + + fluid_output_settings = copy.deepcopy(gid_output_settings) + fluid_output_settings["Parameters"]["model_part_name"].SetString("FluidModelPart") + fluid_output_settings["Parameters"]["output_name"].SetString(f"{self.structure_filename}_{self.convergence_accelerator}_fluid") + fluid_output_settings["Parameters"]["postprocess_parameters"]["result_file_configuration"]["nodal_results"].SetStringArray(["VELOCITY","PRESSURE"]) + self.parameters["output_processes"]["gid_output"].Append(fluid_output_settings) + + structure_output_settings = copy.deepcopy(gid_output_settings) + structure_output_settings["Parameters"]["model_part_name"].SetString("Structure") + structure_output_settings["Parameters"]["output_name"].SetString(f"{self.structure_filename}_{self.convergence_accelerator}_structure") + structure_output_settings["Parameters"]["postprocess_parameters"]["result_file_configuration"]["nodal_results"].SetStringArray(["DISPLACEMENT"]) + self.parameters["output_processes"]["gid_output"].Append(structure_output_settings) + + def _AddReferenceValuesOutput(self): + json_output_settings = KratosMultiphysics.Parameters("""{ + "python_module" : "json_output_process", + "kratos_module" : "KratosMultiphysics", + "process_name" : "JsonOutputProcess", + "Parameters" : { + "output_variables" : [], + "output_file_name" : "TO_BE_DEFINED", + "model_part_name" : "Structure", + "time_frequency" : 0.01 + } + }""") + output_file_name = f"{self.structure_filename}_{self.convergence_accelerator}_results.json" + json_output_settings["Parameters"]["output_file_name"].SetString(output_file_name) + json_output_settings["Parameters"]["output_variables"].SetStringArray(self.check_variables_list) + self.parameters["processes"]["json_check_process_list"].Append(json_output_settings) + + def _AddReferenceValuesCheck(self): + json_check_settings = KratosMultiphysics.Parameters("""{ + "python_module" : "from_json_check_result_process", + "kratos_module" : "KratosMultiphysics", + "process_name" : "FromJsonCheckResultProcess", + "Parameters" : { + "check_variables" : [], + "input_file_name" : "TO_BE_DEFINED", + "model_part_name" : "Structure", + "tolerance" : 0.0, + "relative_tolerance" : 0.0, + "time_frequency" : 0.01 + } + }""") + input_file_name = f"{self.structure_filename}_{self.convergence_accelerator}_results.json" + json_check_settings["Parameters"]["input_file_name"].SetString(input_file_name) + json_check_settings["Parameters"]["check_variables"].SetStringArray(self.check_variables_list) + json_check_settings["Parameters"]["tolerance"].SetDouble(self.check_absolute_tolerance) + json_check_settings["Parameters"]["relative_tolerance"].SetDouble(self.check_relative_tolerance) + self.parameters["processes"]["json_check_process_list"].Append(json_check_settings) + +if __name__ == '__main__': + KratosUnittest.main() + diff --git a/applications/FSIApplication/tests/embedded_fsi_test/FluidMaterials.json b/applications/FSIApplication/tests/embedded_fsi_test/FluidMaterials.json new file mode 100644 index 000000000000..2da3302c1189 --- /dev/null +++ b/applications/FSIApplication/tests/embedded_fsi_test/FluidMaterials.json @@ -0,0 +1,20 @@ +{ + "properties" : [{ + "model_part_name" : "FluidModelPart", + "properties_id" : 0, + "Material" : null + },{ + "model_part_name" : "FluidModelPart.FluidParts_Fluid", + "properties_id" : 1, + "Material" : { + "constitutive_law" : { + "name" : "Newtonian2DLaw" + }, + "Variables" : { + "DENSITY" : 1.0e3, + "DYNAMIC_VISCOSITY" : 1.0e-3 + }, + "Tables" : null + } + }] +} diff --git a/applications/FSIApplication/tests/embedded_fsi_test/ProjectParameters.json b/applications/FSIApplication/tests/embedded_fsi_test/ProjectParameters.json new file mode 100644 index 000000000000..aeb900ad77c1 --- /dev/null +++ b/applications/FSIApplication/tests/embedded_fsi_test/ProjectParameters.json @@ -0,0 +1,190 @@ + { + "analysis_stage" : "KratosMultiphysics.FSIApplication.fsi_analysis", + "problem_data": { + "problem_name": "embedded_fsi_test", + "parallel_type": "OpenMP", + "echo_level": 0, + "start_time": 0.0, + "end_time": 9.99e-1 + }, + "solver_settings": { + "solver_type": "partitioned_embedded", + "coupling_scheme": "dirichlet_neumann", + "echo_level": 1, + "structure_solver_settings": { + "solver_type" : "Dynamic", + "model_part_name" : "Structure", + "domain_size" : 2, + "echo_level" : 0, + "analysis_type" : "non_linear", + "time_integration_method" : "implicit", + "scheme_type" : "bossak", + "model_import_settings" : { + "input_type": "mdpa", + "input_filename": "TO_BE_SET" + }, + "material_import_settings": { + "materials_filename": "StructuralMaterialsVolumetric.json" + }, + "time_stepping": { + "time_step": 1.0e-1 + }, + "line_search" : false, + "convergence_criterion" : "residual_criterion", + "displacement_relative_tolerance" : 1e-5, + "displacement_absolute_tolerance" : 1e-7, + "residual_relative_tolerance" : 1e-5, + "residual_absolute_tolerance" : 1e-7, + "max_iteration" : 20 + }, + "fluid_solver_settings":{ + "model_part_name" : "FluidModelPart", + "domain_size" : 2, + "solver_type" : "Embedded", + "model_import_settings" : { + "input_type" : "mdpa", + "input_filename" : "embedded_fsi_test_fluid" + }, + "material_import_settings": { + "materials_filename": "FluidMaterials.json" + }, + "distance_modification_settings": { + "distance_threshold": 1.0e-3 + }, + "echo_level" : 0, + "compute_reactions" : true, + "maximum_iterations" : 10, + "relative_velocity_tolerance" : 1e-5, + "absolute_velocity_tolerance" : 1e-7, + "relative_pressure_tolerance" : 1e-5, + "absolute_pressure_tolerance" : 1e-7, + "assign_neighbour_elements_to_conditions" : true, + "volume_model_part_name" : "FluidModelPart.FluidParts_Fluid", + "skin_parts" : ["FluidModelPart.NoSlip2D_Walls"], + "no_skin_parts" : [], + "time_stepping" : { + "automatic_time_step": false, + "time_step": 1.0e-1 + }, + "formulation": { + "element_type": "embedded_weakly_compressible_navier_stokes", + "is_slip": true, + "slip_length": 1.0e6, + "penalty_coefficient": 1.0e3, + "dynamic_tau": 1.0 + }, + "fm_ale_settings": { + "fm_ale_step_frequency": 1, + "mesh_movement": "implicit", + "fm_ale_solver_settings": { + "structure_model_part_name": "FSICouplingInterfaceFluid", + "virtual_model_part_name": "VirtualModelPart", + "linear_solver_settings": { + "preconditioner_type": "amg", + "solver_type": "amgcl", + "smoother_type": "ilu0", + "krylov_type": "cg", + "max_iteration": 2000, + "verbosity": 0, + "tolerance": 1e-8, + "scaling": false, + "use_block_matrices_if_possible": true + }, + "embedded_nodal_variable_settings": { + "gradient_penalty_coefficient": 5.0e-2, + "linear_solver_settings": { + "preconditioner_type": "amg", + "solver_type": "amgcl", + "smoother_type": "ilu0", + "krylov_type": "cg", + "max_iteration": 2000, + "verbosity": 0, + "tolerance": 1e-8, + "scaling": false, + "block_size": 1, + "use_block_matrices_if_possible": true + } + } + } + } + }, + "coupling_settings":{ + "nl_tol": 1e-4, + "nl_max_it": 10, + "coupling_strategy_settings": { + "solver_type": "MVQN" + }, + "structure_interfaces_list": ["Structure.FluidInterface"] + } + }, + "processes":{ + "structure_constraints_process_list" : [{ + "python_module" : "assign_vector_variable_process", + "kratos_module" : "KratosMultiphysics", + "process_name" : "AssignVectorVariableProcess", + "Parameters" : { + "model_part_name" : "Structure.LeftEdge", + "variable_name" : "DISPLACEMENT", + "interval" : [0.0,"End"], + "constrained" : [true,true,false], + "value" : [0.0,0.0,null] + } + }], + "structure_loads_process_list" : [], + "fluid_initial_conditions_process_list" : [], + "fluid_boundary_conditions_process_list" : [{ + "python_module" : "apply_noslip_process", + "kratos_module" : "KratosMultiphysics.FluidDynamicsApplication", + "process_name" : "ApplyNoSlipProcess", + "Parameters" : { + "model_part_name" : "FluidModelPart.NoSlip2D_Walls" + } + },{ + "python_module" : "assign_scalar_variable_process", + "kratos_module" : "KratosMultiphysics", + "process_name" : "AssignScalarVariableProcess", + "Parameters" : { + "model_part_name" : "FluidModelPart.PressureConstraints2D_TopRightCorner", + "variable_name" : "PRESSURE", + "interval" : [0.0,"End"], + "constrained" : true, + "value" : 0.0 + } + },{ + "python_module" : "assign_vector_variable_process", + "kratos_module" : "KratosMultiphysics", + "process_name" : "AssignVectorVariableProcess", + "Parameters" : { + "model_part_name" : "FluidModelPart.NoSlip2D_Walls", + "variable_name" : "MESH_DISPLACEMENT", + "interval" : [0.0,"End"], + "constrained" : [true,true,false], + "value" : [0.0,0.0,null] + } + }], + "fluid_gravity" : [{ + "python_module" : "assign_vector_by_direction_process", + "kratos_module" : "KratosMultiphysics", + "process_name" : "AssignVectorByDirectionProcess", + "Parameters" : { + "model_part_name" : "FluidModelPart.FluidParts_Fluid", + "variable_name" : "BODY_FORCE", + "modulus" : 10, + "constrained" : false, + "direction" : [0.0,-1.0,0.0] + } + }], + "fluid_auxiliar_process_list" : [{ + "python_module": "apply_embedded_postprocess_process", + "kratos_module": "KratosMultiphysics.FluidDynamicsApplication", + "process_name": "ApplyEmbeddedPostprocessrocess", + "Parameters": { + "model_part_name": "FluidModelPart.FluidParts_Fluid" + } + }], + "json_check_process_list" : [] + }, + "output_processes":{ + "gid_output" : [] + } +} diff --git a/applications/FSIApplication/tests/embedded_fsi_test/StructuralMaterialsVolumetric.json b/applications/FSIApplication/tests/embedded_fsi_test/StructuralMaterialsVolumetric.json new file mode 100644 index 000000000000..4f9a4fa6ae23 --- /dev/null +++ b/applications/FSIApplication/tests/embedded_fsi_test/StructuralMaterialsVolumetric.json @@ -0,0 +1,17 @@ +{ + "properties" : [{ + "model_part_name" : "Structure.Solid", + "properties_id" : 1, + "Material" : { + "constitutive_law" : { + "name" : "LinearElasticPlaneStrain2DLaw" + }, + "Variables" : { + "DENSITY" : 3000.0, + "YOUNG_MODULUS" : 200.0e5, + "POISSON_RATIO" : 0.3 + }, + "Tables" : null + } + }] +} diff --git a/applications/FSIApplication/tests/embedded_fsi_test/embedded_fsi_test_fluid.mdpa b/applications/FSIApplication/tests/embedded_fsi_test/embedded_fsi_test_fluid.mdpa new file mode 100644 index 000000000000..73674e51e3bf --- /dev/null +++ b/applications/FSIApplication/tests/embedded_fsi_test/embedded_fsi_test_fluid.mdpa @@ -0,0 +1,798 @@ +Begin ModelPartData +// VARIABLE_NAME value +End ModelPartData + +Begin Properties 0 +End Properties + +Begin Nodes + 1 1.0000000000 0.0000000000 0.0000000000 + 2 0.9000000000 0.0000000000 0.0000000000 + 3 1.0000000000 0.1000000000 0.0000000000 + 4 0.9000000000 0.1000000000 0.0000000000 + 5 0.8000000000 0.0000000000 0.0000000000 + 6 1.0000000000 0.2000000000 0.0000000000 + 7 0.8000000000 0.1000000000 0.0000000000 + 8 0.9000000000 0.2000000000 0.0000000000 + 9 0.8000000000 0.2000000000 0.0000000000 + 10 1.0000000000 0.3000000000 0.0000000000 + 11 0.7000000000 0.0000000000 0.0000000000 + 12 0.7000000000 0.1000000000 0.0000000000 + 13 0.9000000000 0.3000000000 0.0000000000 + 14 0.8000000000 0.3000000000 0.0000000000 + 15 0.7000000000 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a test suit with the selected tests (Small tests): smallSuite = suites['small'] smallSuite.addTests(KratosUnittest.TestLoader().loadTestsFromTestCases([ConvergenceAcceleratorTest])) + smallSuite.addTests(KratosUnittest.TestLoader().loadTestsFromTestCases([EmbeddedFsiTest])) smallSuite.addTests(KratosUnittest.TestLoader().loadTestsFromTestCases([FSICouplingInterfaceTest])) smallSuite.addTests(KratosUnittest.TestLoader().loadTestsFromTestCases([FSIProblemEmulatorTest])) smallSuite.addTests(KratosUnittest.TestLoader().loadTestsFromTestCases([ConvergenceAcceleratorSpringTest]))