packages.bib

@Manual{R-OpenImageR,
  title = {OpenImageR: An Image Processing Toolkit},
  author = {Lampros Mouselimis},
  year = {2019},
  note = {R package version 1.1.6},
  url = {https://CRAN.R-project.org/package=OpenImageR},
}
@Manual{R-Rcpp,
  title = {Rcpp: Seamless R and C++ Integration},
  author = {Dirk Eddelbuettel and Romain Francois and JJ Allaire and Kevin Ushey and Qiang Kou and Nathan Russell and Douglas Bates and John Chambers},
  year = {2020},
  note = {http://www.rcpp.org, http://dirk.eddelbuettel.com/code/rcpp.html, https://github.com/RcppCore/Rcpp},
}
@Manual{R-ggforce,
  title = {ggforce: Accelerating 'ggplot2'},
  author = {Thomas Lin Pedersen},
  year = {2019},
  note = {R package version 0.3.1},
  url = {https://CRAN.R-project.org/package=ggforce},
}
@Manual{R-gtools,
  title = {gtools: Various R Programming Tools},
  author = {Gregory R. Warnes and Ben Bolker and Thomas Lumley},
  year = {2020},
  note = {R package version 3.8.2},
  url = {https://CRAN.R-project.org/package=gtools},
}
@Manual{R-here,
  title = {here: A Simpler Way to Find Your Files},
  author = {Kirill Müller},
  year = {2017},
  note = {R package version 0.1},
  url = {https://CRAN.R-project.org/package=here},
}
@Manual{R-imager,
  title = {imager: Image Processing Library Based on 'CImg'},
  author = {Simon Barthelme},
  year = {2020},
  note = {R package version 0.42.1},
  url = {https://CRAN.R-project.org/package=imager},
}
@Manual{R-knitr,
  title = {knitr: A General-Purpose Package for Dynamic Report Generation in R},
  author = {Yihui Xie},
  year = {2020},
  note = {R package version 1.28},
  url = {https://CRAN.R-project.org/package=knitr},
}
@Manual{R-patchwork,
  title = {patchwork: The Composer of Plots},
  author = {Thomas Lin Pedersen},
  year = {2019},
  note = {R package version 1.0.0},
  url = {https://CRAN.R-project.org/package=patchwork},
}
@Manual{R-plotrix,
  title = {plotrix: Various Plotting Functions},
  author = {Jim Lemon and Ben Bolker and Sander Oom and Eduardo Klein and Barry Rowlingson and Hadley Wickham and Anupam Tyagi and Olivier Eterradossi and Gabor Grothendieck and Michael Toews and John Kane and Rolf Turner and Carl Witthoft and Julian Stander and Thomas Petzoldt and Remko Duursma and Elisa Biancotto and Ofir Levy and Christophe Dutang and Peter Solymos and Robby Engelmann and Michael Hecker and Felix Steinbeck and Hans Borchers and Henrik Singmann and Ted Toal and Derek Ogle and Darshan Baral and Ulrike Groemping and Bill Venables},
  year = {2019},
  note = {R package version 3.7-7},
  url = {https://CRAN.R-project.org/package=plotrix},
}
@Manual{R-pracma,
  title = {pracma: Practical Numerical Math Functions},
  author = {Hans W. Borchers},
  year = {2019},
  note = {R package version 2.2.9},
  url = {https://CRAN.R-project.org/package=pracma},
}
@Manual{R-rstan,
  title = {rstan: R Interface to Stan},
  author = {Jiqiang Guo and Jonah Gabry and Ben Goodrich},
  year = {2020},
  note = {R package version 2.19.3},
  url = {https://CRAN.R-project.org/package=rstan},
}
@Manual{R-tidybayes,
  title = {tidybayes: Tidy Data and 'Geoms' for Bayesian Models},
  author = {Matthew Kay},
  year = {2020},
  note = {R package version 2.0.3},
  url = {https://CRAN.R-project.org/package=tidybayes},
}
@Manual{R-tidyverse,
  title = {tidyverse: Easily Install and Load the 'Tidyverse'},
  author = {Hadley Wickham},
  year = {2019},
  note = {R package version 1.3.0},
  url = {https://CRAN.R-project.org/package=tidyverse},
}
@Article{Rcpp2011,
  title = {{Rcpp}: Seamless {R} and {C++} Integration},
  author = {Dirk Eddelbuettel and Romain Fran\c{c}ois},
  journal = {Journal of Statistical Software},
  year = {2011},
  volume = {40},
  number = {8},
  pages = {1--18},
  url = {http://www.jstatsoft.org/v40/i08/},
  doi = {10.18637/jss.v040.i08},
}
@Book{Rcpp2013,
  title = {Seamless {R} and {C++} Integration with {Rcpp}},
  author = {Dirk Eddelbuettel},
  publisher = {Springer},
  address = {New York},
  year = {2013},
  note = {ISBN 978-1-4614-6867-7},
  doi = {10.1007/978-1-4614-6868-4},
}
@Article{Rcpp2017,
  title = {{Extending 	extit{R} with 	extit{C++}: A Brief Introduction to 	extit{Rcpp}}},
  author = {Dirk Eddelbuettel and James Joseph Balamuta},
  journal = {PeerJ Preprints},
  year = {2017},
  month = {aug},
  volume = {5},
  pages = {e3188v1},
  issn = {2167-9843},
  url = {https://doi.org/10.7287/peerj.preprints.3188v1},
  doi = {10.7287/peerj.preprints.3188v1},
}
@Book{knitr2015,
  title = {Dynamic Documents with {R} and knitr},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  address = {Boca Raton, Florida},
  year = {2015},
  edition = {2nd},
  note = {ISBN 978-1498716963},
  url = {https://yihui.org/knitr/},
}
@InCollection{knitr2014,
  booktitle = {Implementing Reproducible Computational Research},
  editor = {Victoria Stodden and Friedrich Leisch and Roger D. Peng},
  title = {knitr: A Comprehensive Tool for Reproducible Research in {R}},
  author = {Yihui Xie},
  publisher = {Chapman and Hall/CRC},
  year = {2014},
  note = {ISBN 978-1466561595},
  url = {http://www.crcpress.com/product/isbn/9781466561595},
}
@Article{plotrix2006,
  year = {2006},
  title = {Plotrix: a package in the red light district of R},
  journal = {R-News},
  volume = {6},
  number = {4},
  pages = {8-12},
  author = {Lemon J},
}
@Article{tidyverse2019,
  title = {Welcome to the {tidyverse}},
  author = {Hadley Wickham and Mara Averick and Jennifer Bryan and Winston Chang and Lucy D'Agostino McGowan and Romain François and Garrett Grolemund and Alex Hayes and Lionel Henry and Jim Hester and Max Kuhn and Thomas Lin Pedersen and Evan Miller and Stephan Milton Bache and Kirill Müller and Jeroen Ooms and David Robinson and Dana Paige Seidel and Vitalie Spinu and Kohske Takahashi and Davis Vaughan and Claus Wilke and Kara Woo and Hiroaki Yutani},
  year = {2019},
  journal = {Journal of Open Source Software},
  volume = {4},
  number = {43},
  pages = {1686},
  doi = {10.21105/joss.01686},
}