From f36d036b460969254f5f40ecedd7f60681ce3a0b Mon Sep 17 00:00:00 2001 From: Chien-Chi Lo Date: Wed, 2 Dec 2020 16:27:14 -0700 Subject: [PATCH] update EDGE ABCs and ChangeLog --- ChangeLog.txt | 6 +++--- edge_ui/docs/EDGE_ABCs.pdf | Bin 83412 -> 81541 bytes edge_ui/index.html | 2 +- 3 files changed, 4 insertions(+), 4 deletions(-) diff --git a/ChangeLog.txt b/ChangeLog.txt index 994fb15f..d89fe0e2 100644 --- a/ChangeLog.txt +++ b/ChangeLog.txt @@ -1,4 +1,4 @@ --- Version 2020 +-- Version 20201130 EDGE 2.4.0 * Update bcftools from 1.6 to 1.10.2 * Update samtools from 1.9 to 1.10 @@ -22,7 +22,7 @@ EDGE 2.4.0 * Update sratoolskit from 2.8.2 to 2.9.6 * Update JBrowse from 1.12.3 to 1.16.8 * Update Anaconda2 and Anaconda3 to 2019.10 and 2020.02 -* Update lrasm from 0.1.0 to 0.2.0 which include new assembler wtdbg2 +* Update lrasm from 0.1.0 to 0.3.0 which include new assembler wtdbg2 and (meta)flye * Update gottcha dmd complier and use conda to install rapsearch2 * Add MaxBin tools for metagenome contig binning * Add debug flag in auto_run script @@ -58,7 +58,7 @@ EDGE GUI 2.4.0 * Add extract reads fastq for Kraken result * Add Secondary Metabolite Analysis Annotation * Update Qiime to version 2 -* Add wtdbg2 long reads assembly algorithm option +* Add wtdbg2 and (meta)flye long reads assembly algorithm option * Add Unicycler option for assembly * Hover to show accession id for genome search result list * Update final_report.pdf to match with web based summary result page diff --git a/edge_ui/docs/EDGE_ABCs.pdf b/edge_ui/docs/EDGE_ABCs.pdf index 7cada4cac6fa0614867e64dc0ac58bc923363e81..5ba17ed04749b2fd3592a95d81b8c78764edd9e3 100644 GIT binary patch delta 8877 zcmb_?bySpJ*EU19lsJ+@H_R}>(A^y(4MU@pv>*)KHPj#iN=OMvNGOUlNFylS3KG&S z@$vI{-tT>%^?rYT_qx|Q>+G}7KKsNv*IE186A1)SSNJwudP*un5Mcxb*UIY1I0Y#j z0Rn?OY#&ibNr`B=xI3V{Tml{JK@brw5E251K}2*xaHNPb2!VjWz#=*zn26DBgD4mw zq6RVt!4OaoL=0jnBSYcfZvT%N?3e_A7LNh}$M~tCkw~zzl7gt1l9Hkl3<`sZ%Om8) 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Batch Project Submission

Run EDGE with Multiple projects using a tools set configuration. Click Download [Sample File] to see the example.

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