This is repo with reconstructed EDGE bioinformatics modularized workflows by using Nextflow. Here is the list for modules and could be expanded.
- sra2fastq
- runFaQCs
- hostRemoval
- runAssembly
- runReadsToContig
- readsTaxonomyAssignment
- contigsTaxonomyAssignment
- runAnnotation
- phageFinder
- runAntiSmash
- runBinning
- runCheckM
- runSpecialtyGenesProfiling
- ...