fix exports and module structure

LCSB-BioCore · Dec 17, 2023 · 80f502a · 80f502a
1 parent 1ef4e1d
commit 80f502a
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Showing 4 changed files with 7 additions and 4 deletions.
diff --git a/src/COBREXA.jl b/src/COBREXA.jl
@@ -36,11 +36,14 @@ include("builders/objectives.jl")
 include("builders/enzymes.jl")
 include("builders/thermodynamic.jl")
 
-include("analysis/modifications.jl")
+include("analysis/core.jl")
 include("analysis/flux_balance.jl")
 include("analysis/parsimonious_flux_balance.jl")
 include("analysis/minimal_metabolic_adjustment.jl")
+include("analysis/enzyme_constraints.jl")
+include("analysis/max_min_driving_force.jl")
 
 include("misc/bounds.jl")
+include("misc/modifications.jl")
 
 end # module COBREXA
diff --git a/src/analysis/flux_balance.jl b/src/analysis/flux_balance.jl
@@ -26,4 +26,4 @@ Pipe-able overload of [`flux_balance`](@ref).
 """
 flux_balance_analysis(optimizer; modifications = []) = m -> flux_balance_analysis(m, optimizer; modifications)
 
-export flux_balance
+export flux_balance_analysis
diff --git a/src/analysis/parsimonious_flux_balance.jl b/src/analysis/parsimonious_flux_balance.jl
@@ -109,4 +109,4 @@ Pipe-able variant of [`parsimonious_flux_balance`](@ref).
 parsimonious_flux_balance_analysis(optimizer; kwargs...) =
     model -> parsimonious_flux_balance_analysis(model, optimizer; kwargs...)
 
-export parsimonious_flux_balance
+export parsimonious_flux_balance_analysis
diff --git a/src/builders/core.jl b/src/builders/core.jl
@@ -31,7 +31,7 @@ function build_flux_balance_model(model::A.AbstractFBCModel)
     )
 end
 
-export fbc_model_constraints
+export build_flux_balance_model
 
 """
 $(TYPEDSIGNATURES)
-Original file line number
+Diff line change
@@ Expand Up / @@ -31,7 +31,7 @@ function build_flux_balance_model(model::A.AbstractFBCModel) @@
         )
     end
-    export fbc_model_constraints
+    export build_flux_balance_model
     """
     $(TYPEDSIGNATURES)
@@ Expand Down @@