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TestGermination.cpp
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//---------------------------------------------------------------------------
// TestGermination.cpp
//---------------------------------------------------------------------------
#include "TestGermination.h"
#include <gtest/gtest.h>
#include "SimManager.h"
#include "Grid.h"
#include "BehaviorBase.h"
#include <fstream>
#include <math.h>
/////////////////////////////////////////////////////////////////////////////
// TestGerminationNormalProcessing()
/////////////////////////////////////////////////////////////////////////////
TEST(Germination, TestGerminationNormalProcessing)
{
clSimManager * p_oSimManager = new clSimManager( 7, 1, "" );
try {
//Feed our file to the sim manager
p_oSimManager->ReadFile(WriteGerminationXMLFile1());
//Run the germination behavior
p_oSimManager->GetBehaviorObject(p_oSimManager->GetNumberOfBehaviors() - 1)->Action();
//Verify file 1
VerifyXMLFile1(p_oSimManager->GetGridObject("Dispersed Seeds"));
delete p_oSimManager;
} catch (modelErr &e) {
delete p_oSimManager;
FAIL() << "Testing failed in function: " << e.sFunction << " with message: " << e.sMoreInfo;
}
}
/////////////////////////////////////////////////////////////////////////////
// TestGerminationErrorProcessing()
/////////////////////////////////////////////////////////////////////////////
TEST(Germination, TestGerminationErrorProcessing) {
clSimManager * p_oSimManager = new clSimManager( 7, 1, "" );
try
{
p_oSimManager->ReadFile(WriteGerminationXMLErrorFile1());
FAIL() << "TestGermination didn't catch bad parameter.";
}
catch (modelErr& err)
{
if (err.sFunction.compare("clGermination::GetData") != 0)
{
FAIL() << "TestGermination caught the wrong error.";
}
}
try
{
p_oSimManager->ReadFile(WriteGerminationXMLErrorFile2());
FAIL() << "TestGermination didn't catch bad parameter.";
}
catch (modelErr& err)
{
if (err.sFunction.compare("clGermination::GetData") != 0)
{
FAIL() << "TestGermination caught the wrong error.";
}
}
delete p_oSimManager;
}
/////////////////////////////////////////////////////////////////////////////
// VerifyXMLFile1
/////////////////////////////////////////////////////////////////////////////
void VerifyXMLFile1(clGrid * p_oSeedGrid) {
float fNumExpectedSeeds, fNumActualSeeds;
int iNumXCells = p_oSeedGrid->GetNumberXCells(), iNumYCells = p_oSeedGrid->GetNumberYCells(), iX, iY, //loop counters
iSpecies1Code = p_oSeedGrid->GetFloatDataCode("seeds_0"),
iSpecies2Code = p_oSeedGrid->GetFloatDataCode("seeds_1"),
iSpecies3Code = p_oSeedGrid->GetFloatDataCode("seeds_2");
//Make sure we got the codes
EXPECT_GT(iSpecies1Code, -1);
EXPECT_GT(iSpecies2Code, -1);
EXPECT_GT(iSpecies3Code, -1);
for (iX = 0; iX < iNumXCells; iX++) {
for (iY = 0; iY < iNumYCells; iY++) {
//Species 1
fNumExpectedSeeds = (iX + iY) * 0.3;
p_oSeedGrid->GetValueOfCell(iX, iY, iSpecies1Code, & fNumActualSeeds);
EXPECT_LT(fabs(fNumExpectedSeeds - fNumActualSeeds), 2);
//Species 2
fNumExpectedSeeds = 2 * (iX + iY) * 0.7;
p_oSeedGrid->GetValueOfCell(iX, iY, iSpecies2Code, & fNumActualSeeds);
EXPECT_LT(fabs(fNumExpectedSeeds - fNumActualSeeds), 2);
//Species 3
fNumExpectedSeeds = (iX + iY) * 3;
p_oSeedGrid->GetValueOfCell(iX, iY, iSpecies3Code, & fNumActualSeeds);
EXPECT_LT(fabs(fNumExpectedSeeds - fNumActualSeeds), 2);
}
}
}
/////////////////////////////////////////////////////////////////////////////
// WriteGerminationXMLFile1()
/////////////////////////////////////////////////////////////////////////////
const char* WriteGerminationXMLFile1() {
using namespace std;
const char *cFileString = "TestFile1.xml";
int iX, iY, iNumX = 20, iNumY = 20;
//Open file to write to
fstream oOut;
oOut.open(cFileString, ios::out | ios::trunc);
oOut << "<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"no\" ?>"
<< "<paramFile fileCode=\"06010101\">"
<< "<plot>"
<< "<timesteps>1</timesteps>"
<< "<yearsPerTimestep>5</yearsPerTimestep>"
<< "<randomSeed>1</randomSeed>"
<< "<plot_lenX>100.0</plot_lenX>"
<< "<plot_lenY>100.0</plot_lenY>"
<< "<plot_latitude>55.37</plot_latitude>"
<< "<plot_precip_mm_yr>1150.64</plot_precip_mm_yr>"
<< "<plot_temp_C>12.8</plot_temp_C>"
<< "</plot>"
<< "<trees>"
<< "<tr_speciesList>"
<< "<tr_species speciesName=\"Species_1\"/>"
<< "<tr_species speciesName=\"Species_2\"/>"
<< "<tr_species speciesName=\"Species_3\"/>"
<< "</tr_speciesList>"
<< "<tr_seedDiam10Cm>0.1</tr_seedDiam10Cm>"
<< "<tr_minAdultDBH>"
<< "<tr_madVal species=\"Species_1\">10.0</tr_madVal>"
<< "<tr_madVal species=\"Species_2\">10.0</tr_madVal>"
<< "<tr_madVal species=\"Species_3\">10.0</tr_madVal>"
<< "</tr_minAdultDBH>"
<< "<tr_maxSeedlingHeight>"
<< "<tr_mshVal species=\"Species_1\">1.35</tr_mshVal>"
<< "<tr_mshVal species=\"Species_2\">1.35</tr_mshVal>"
<< "<tr_mshVal species=\"Species_3\">1.35</tr_mshVal>"
<< "</tr_maxSeedlingHeight>"
<< "</trees>"
<< "<allometry>"
<< "<tr_canopyHeight>"
<< "<tr_chVal species=\"Species_1\">39.48</tr_chVal>"
<< "<tr_chVal species=\"Species_2\">39.54</tr_chVal>"
<< "<tr_chVal species=\"Species_3\">40.0</tr_chVal>"
<< "</tr_canopyHeight>"
<< "<tr_stdAsympCrownRad>"
<< "<tr_sacrVal species=\"Species_1\">0.0549</tr_sacrVal>"
<< "<tr_sacrVal species=\"Species_2\">0.0614</tr_sacrVal>"
<< "<tr_sacrVal species=\"Species_3\">0.0242</tr_sacrVal>"
<< "</tr_stdAsympCrownRad>"
<< "<tr_stdCrownRadExp>"
<< "<tr_screVal species=\"Species_1\">1.0</tr_screVal>"
<< "<tr_screVal species=\"Species_2\">1.0</tr_screVal>"
<< "<tr_screVal species=\"Species_3\">1.0</tr_screVal>"
<< "</tr_stdCrownRadExp>"
<< "<tr_stdMaxCrownRad>"
<< "<tr_smcrVal species=\"Species_1\">10</tr_smcrVal>"
<< "<tr_smcrVal species=\"Species_2\">10</tr_smcrVal>"
<< "<tr_smcrVal species=\"Species_3\">10</tr_smcrVal>"
<< "</tr_stdMaxCrownRad>"
<< "<tr_conversionDiam10ToDBH>"
<< "<tr_cdtdVal species=\"Species_1\">0.8008</tr_cdtdVal>"
<< "<tr_cdtdVal species=\"Species_2\">0.5944</tr_cdtdVal>"
<< "<tr_cdtdVal species=\"Species_3\">0.7059</tr_cdtdVal>"
<< "</tr_conversionDiam10ToDBH>"
<< "<tr_interceptDiam10ToDBH>"
<< "<tr_idtdVal species=\"Species_1\">0</tr_idtdVal>"
<< "<tr_idtdVal species=\"Species_2\">0</tr_idtdVal>"
<< "<tr_idtdVal species=\"Species_3\">0</tr_idtdVal>"
<< "</tr_interceptDiam10ToDBH>"
<< "<tr_stdAsympCrownHt>"
<< "<tr_sachVal species=\"Species_1\">0.389</tr_sachVal>"
<< "<tr_sachVal species=\"Species_2\">0.368</tr_sachVal>"
<< "<tr_sachVal species=\"Species_3\">0.464</tr_sachVal>"
<< "</tr_stdAsympCrownHt>"
<< "<tr_stdCrownHtExp>"
<< "<tr_scheVal species=\"Species_1\">1.0</tr_scheVal>"
<< "<tr_scheVal species=\"Species_2\">1.0</tr_scheVal>"
<< "<tr_scheVal species=\"Species_3\">1.0</tr_scheVal>"
<< "</tr_stdCrownHtExp>"
<< "<tr_slopeOfHeight-Diam10>"
<< "<tr_sohdVal species=\"Species_1\">0.03418</tr_sohdVal>"
<< "<tr_sohdVal species=\"Species_2\">0.0269</tr_sohdVal>"
<< "<tr_sohdVal species=\"Species_3\">0.02871</tr_sohdVal>"
<< "</tr_slopeOfHeight-Diam10>"
<< "<tr_slopeOfAsymHeight>"
<< "<tr_soahVal species=\"Species_1\">0.0299</tr_soahVal>"
<< "<tr_soahVal species=\"Species_2\">0.0241</tr_soahVal>"
<< "<tr_soahVal species=\"Species_3\">0.0263</tr_soahVal>"
<< "</tr_slopeOfAsymHeight>"
<< "<tr_whatSeedlingHeightDiam>"
<< "<tr_wsehdVal species=\"Species_1\">0</tr_wsehdVal>"
<< "<tr_wsehdVal species=\"Species_2\">0</tr_wsehdVal>"
<< "<tr_wsehdVal species=\"Species_3\">0</tr_wsehdVal>"
<< "</tr_whatSeedlingHeightDiam>"
<< "<tr_whatSaplingHeightDiam>"
<< "<tr_wsahdVal species=\"Species_1\">0</tr_wsahdVal>"
<< "<tr_wsahdVal species=\"Species_2\">0</tr_wsahdVal>"
<< "<tr_wsahdVal species=\"Species_3\">0</tr_wsahdVal>"
<< "</tr_whatSaplingHeightDiam>"
<< "<tr_whatAdultHeightDiam>"
<< "<tr_wahdVal species=\"Species_1\">0</tr_wahdVal>"
<< "<tr_wahdVal species=\"Species_2\">0</tr_wahdVal>"
<< "<tr_wahdVal species=\"Species_3\">0</tr_wahdVal>"
<< "</tr_whatAdultHeightDiam>"
<< "<tr_whatAdultCrownRadDiam>"
<< "<tr_wacrdVal species=\"Species_1\">0</tr_wacrdVal>"
<< "<tr_wacrdVal species=\"Species_2\">0</tr_wacrdVal>"
<< "<tr_wacrdVal species=\"Species_3\">0</tr_wacrdVal>"
<< "</tr_whatAdultCrownRadDiam>"
<< "<tr_whatAdultCrownHeightHeight>"
<< "<tr_wachhVal species=\"Species_1\">0</tr_wachhVal>"
<< "<tr_wachhVal species=\"Species_2\">0</tr_wachhVal>"
<< "<tr_wachhVal species=\"Species_3\">0</tr_wachhVal>"
<< "</tr_whatAdultCrownHeightHeight>"
<< "<tr_whatSaplingCrownRadDiam>"
<< "<tr_wscrdVal species=\"Species_1\">0</tr_wscrdVal>"
<< "<tr_wscrdVal species=\"Species_2\">0</tr_wscrdVal>"
<< "<tr_wscrdVal species=\"Species_3\">0</tr_wscrdVal>"
<< "</tr_whatSaplingCrownRadDiam>"
<< "<tr_whatSaplingCrownHeightHeight>"
<< "<tr_wschhVal species=\"Species_1\">0</tr_wschhVal>"
<< "<tr_wschhVal species=\"Species_2\">0</tr_wschhVal>"
<< "<tr_wschhVal species=\"Species_3\">0</tr_wschhVal>"
<< "</tr_whatSaplingCrownHeightHeight>"
<< "</allometry>";
//Auto-generate seed grid values
oOut << "<grid gridName=\"Dispersed Seeds\">"
<< "<ma_floatCodes>"
<< "<ma_floatCode label=\"seeds_0\">0</ma_floatCode>"
<< "<ma_floatCode label=\"seeds_1\">1</ma_floatCode>"
<< "<ma_floatCode label=\"seeds_2\">2</ma_floatCode>"
<< "</ma_floatCodes>"
<< "<ma_intCodes>"
<< "<ma_intCode label=\"count\">4</ma_intCode>"
<< "</ma_intCodes>"
<< "<ma_boolCodes>"
<< "<ma_boolCode label=\"Is Gap\">0</ma_boolCode>"
<< "</ma_boolCodes>"
<< "<ma_lengthXCells>5</ma_lengthXCells>"
<< "<ma_lengthYCells>5</ma_lengthYCells>";
for (iX = 0; iX < iNumX; iX++)
{
for (iY = 0; iY < iNumY; iY++)
{
oOut << "<ma_v x=\"" << iX << "\" y=\"" << iY << "\">"
<< "<fl c=\"0\">" << (iX + iY) << "</fl>"
<< "<fl c=\"1\">" << 2 * (iX + iY) << "</fl>"
<< "<fl c=\"2\">" << 3 * (iX + iY) << "</fl>"
<< "</ma_v>";
}
}
oOut << "</grid>"
<< "<behaviorList>"
<< "<behavior>"
<< "<behaviorName>NonSpatialDisperse</behaviorName>"
<< "<version>1</version>"
<< "<listPosition>1</listPosition>"
<< "<applyTo species=\"Species_1\" type=\"Adult\"/>"
<< "<applyTo species=\"Species_2\" type=\"Adult\"/>"
<< "<applyTo species=\"Species_3\" type=\"Adult\"/>"
<< "</behavior>"
<< "<behavior>"
<< "<behaviorName>Germination</behaviorName>"
<< "<version>1</version>"
<< "<listPosition>2</listPosition>"
<< "<applyTo species=\"Species_1\" type=\"Seed\"/>"
<< "<applyTo species=\"Species_2\" type=\"Seed\"/>"
<< "</behavior>"
<< "</behaviorList>"
<< "<NonSpatialDisperse1>"
<< "<di_minDbhForReproduction>"
<< "<di_mdfrVal species=\"Species_1\">15.0</di_mdfrVal>"
<< "<di_mdfrVal species=\"Species_2\">15.0</di_mdfrVal>"
<< "<di_mdfrVal species=\"Species_3\">15.0</di_mdfrVal>"
<< "</di_minDbhForReproduction>"
<< "<di_nonSpatialSlopeOfLambda>"
<< "<di_nssolVal species=\"Species_1\">1</di_nssolVal>"
<< "<di_nssolVal species=\"Species_2\">1</di_nssolVal>"
<< "<di_nssolVal species=\"Species_3\">1</di_nssolVal>"
<< "</di_nonSpatialSlopeOfLambda>"
<< "<di_nonSpatialInterceptOfLambda>"
<< "<di_nsiolVal species=\"Species_1\">1</di_nsiolVal>"
<< "<di_nsiolVal species=\"Species_2\">1</di_nsiolVal>"
<< "<di_nsiolVal species=\"Species_3\">1</di_nsiolVal>"
<< "</di_nonSpatialInterceptOfLambda>"
<< "</NonSpatialDisperse1>"
<< "<GeneralDisperse>"
<< "<di_seedDistributionMethod>0</di_seedDistributionMethod>"
<< "</GeneralDisperse>"
<< "<Germination2>"
<< "<ge_proportionGerminating>"
<< "<ge_pgVal species=\"Species_1\">0.3</ge_pgVal>"
<< "<ge_pgVal species=\"Species_2\">0.7</ge_pgVal>"
<< "</ge_proportionGerminating>"
<< "</Germination2>"
<< "</paramFile>";
oOut.close();
return cFileString;
}
/////////////////////////////////////////////////////////////////////////////
// WriteGerminationXMLErrorFile1()
/////////////////////////////////////////////////////////////////////////////
const char* WriteGerminationXMLErrorFile1() {
using namespace std;
const char *cFileString = "TestFile1.xml";
int iX, iY, iNumX = 20, iNumY = 20;
//Open file to write to
fstream oOut;
oOut.open(cFileString, ios::out | ios::trunc);
oOut << "<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"no\" ?>"
<< "<paramFile fileCode=\"06010101\">"
<< "<plot>"
<< "<timesteps>1</timesteps>"
<< "<yearsPerTimestep>5</yearsPerTimestep>"
<< "<randomSeed>1</randomSeed>"
<< "<plot_lenX>100.0</plot_lenX>"
<< "<plot_lenY>100.0</plot_lenY>"
<< "<plot_latitude>55.37</plot_latitude>"
<< "<plot_precip_mm_yr>1150.645781</plot_precip_mm_yr>"
<< "<plot_temp_C>12.88171785</plot_temp_C>"
<< "</plot>"
<< "<trees>"
<< "<tr_speciesList>"
<< "<tr_species speciesName=\"Species_1\"/>"
<< "<tr_species speciesName=\"Species_2\"/>"
<< "<tr_species speciesName=\"Species_3\"/>"
<< "</tr_speciesList>"
<< "<tr_seedDiam10Cm>0.1</tr_seedDiam10Cm>"
<< "<tr_minAdultDBH>"
<< "<tr_madVal species=\"Species_1\">10.0</tr_madVal>"
<< "<tr_madVal species=\"Species_2\">10.0</tr_madVal>"
<< "<tr_madVal species=\"Species_3\">10.0</tr_madVal>"
<< "</tr_minAdultDBH>"
<< "<tr_maxSeedlingHeight>"
<< "<tr_mshVal species=\"Species_1\">1.35</tr_mshVal>"
<< "<tr_mshVal species=\"Species_2\">1.35</tr_mshVal>"
<< "<tr_mshVal species=\"Species_3\">1.35</tr_mshVal>"
<< "</tr_maxSeedlingHeight>"
<< "</trees>"
<< "<allometry>"
<< "<tr_canopyHeight>"
<< "<tr_chVal species=\"Species_1\">39.48</tr_chVal>"
<< "<tr_chVal species=\"Species_2\">39.54</tr_chVal>"
<< "<tr_chVal species=\"Species_3\">40.0</tr_chVal>"
<< "</tr_canopyHeight>"
<< "<tr_stdAsympCrownRad>"
<< "<tr_sacrVal species=\"Species_1\">0.0549</tr_sacrVal>"
<< "<tr_sacrVal species=\"Species_2\">0.0614</tr_sacrVal>"
<< "<tr_sacrVal species=\"Species_3\">0.0242</tr_sacrVal>"
<< "</tr_stdAsympCrownRad>"
<< "<tr_stdCrownRadExp>"
<< "<tr_screVal species=\"Species_1\">1.0</tr_screVal>"
<< "<tr_screVal species=\"Species_2\">1.0</tr_screVal>"
<< "<tr_screVal species=\"Species_3\">1.0</tr_screVal>"
<< "</tr_stdCrownRadExp>"
<< "<tr_stdMaxCrownRad>"
<< "<tr_smcrVal species=\"Species_1\">10</tr_smcrVal>"
<< "<tr_smcrVal species=\"Species_2\">10</tr_smcrVal>"
<< "<tr_smcrVal species=\"Species_3\">10</tr_smcrVal>"
<< "</tr_stdMaxCrownRad>"
<< "<tr_conversionDiam10ToDBH>"
<< "<tr_cdtdVal species=\"Species_1\">0.8008</tr_cdtdVal>"
<< "<tr_cdtdVal species=\"Species_2\">0.5944</tr_cdtdVal>"
<< "<tr_cdtdVal species=\"Species_3\">0.7059</tr_cdtdVal>"
<< "</tr_conversionDiam10ToDBH>"
<< "<tr_interceptDiam10ToDBH>"
<< "<tr_idtdVal species=\"Species_1\">0</tr_idtdVal>"
<< "<tr_idtdVal species=\"Species_2\">0</tr_idtdVal>"
<< "<tr_idtdVal species=\"Species_3\">0</tr_idtdVal>"
<< "</tr_interceptDiam10ToDBH>"
<< "<tr_stdAsympCrownHt>"
<< "<tr_sachVal species=\"Species_1\">0.389</tr_sachVal>"
<< "<tr_sachVal species=\"Species_2\">0.368</tr_sachVal>"
<< "<tr_sachVal species=\"Species_3\">0.464</tr_sachVal>"
<< "</tr_stdAsympCrownHt>"
<< "<tr_stdCrownHtExp>"
<< "<tr_scheVal species=\"Species_1\">1.0</tr_scheVal>"
<< "<tr_scheVal species=\"Species_2\">1.0</tr_scheVal>"
<< "<tr_scheVal species=\"Species_3\">1.0</tr_scheVal>"
<< "</tr_stdCrownHtExp>"
<< "<tr_slopeOfHeight-Diam10>"
<< "<tr_sohdVal species=\"Species_1\">0.03418</tr_sohdVal>"
<< "<tr_sohdVal species=\"Species_2\">0.0269</tr_sohdVal>"
<< "<tr_sohdVal species=\"Species_3\">0.02871</tr_sohdVal>"
<< "</tr_slopeOfHeight-Diam10>"
<< "<tr_slopeOfAsymHeight>"
<< "<tr_soahVal species=\"Species_1\">0.0299</tr_soahVal>"
<< "<tr_soahVal species=\"Species_2\">0.0241</tr_soahVal>"
<< "<tr_soahVal species=\"Species_3\">0.0263</tr_soahVal>"
<< "</tr_slopeOfAsymHeight>"
<< "<tr_whatSeedlingHeightDiam>"
<< "<tr_wsehdVal species=\"Species_1\">0</tr_wsehdVal>"
<< "<tr_wsehdVal species=\"Species_2\">0</tr_wsehdVal>"
<< "<tr_wsehdVal species=\"Species_3\">0</tr_wsehdVal>"
<< "</tr_whatSeedlingHeightDiam>"
<< "<tr_whatSaplingHeightDiam>"
<< "<tr_wsahdVal species=\"Species_1\">0</tr_wsahdVal>"
<< "<tr_wsahdVal species=\"Species_2\">0</tr_wsahdVal>"
<< "<tr_wsahdVal species=\"Species_3\">0</tr_wsahdVal>"
<< "</tr_whatSaplingHeightDiam>"
<< "<tr_whatAdultHeightDiam>"
<< "<tr_wahdVal species=\"Species_1\">0</tr_wahdVal>"
<< "<tr_wahdVal species=\"Species_2\">0</tr_wahdVal>"
<< "<tr_wahdVal species=\"Species_3\">0</tr_wahdVal>"
<< "</tr_whatAdultHeightDiam>"
<< "<tr_whatAdultCrownRadDiam>"
<< "<tr_wacrdVal species=\"Species_1\">0</tr_wacrdVal>"
<< "<tr_wacrdVal species=\"Species_2\">0</tr_wacrdVal>"
<< "<tr_wacrdVal species=\"Species_3\">0</tr_wacrdVal>"
<< "</tr_whatAdultCrownRadDiam>"
<< "<tr_whatAdultCrownHeightHeight>"
<< "<tr_wachhVal species=\"Species_1\">0</tr_wachhVal>"
<< "<tr_wachhVal species=\"Species_2\">0</tr_wachhVal>"
<< "<tr_wachhVal species=\"Species_3\">0</tr_wachhVal>"
<< "</tr_whatAdultCrownHeightHeight>"
<< "<tr_whatSaplingCrownRadDiam>"
<< "<tr_wscrdVal species=\"Species_1\">0</tr_wscrdVal>"
<< "<tr_wscrdVal species=\"Species_2\">0</tr_wscrdVal>"
<< "<tr_wscrdVal species=\"Species_3\">0</tr_wscrdVal>"
<< "</tr_whatSaplingCrownRadDiam>"
<< "<tr_whatSaplingCrownHeightHeight>"
<< "<tr_wschhVal species=\"Species_1\">0</tr_wschhVal>"
<< "<tr_wschhVal species=\"Species_2\">0</tr_wschhVal>"
<< "<tr_wschhVal species=\"Species_3\">0</tr_wschhVal>"
<< "</tr_whatSaplingCrownHeightHeight>"
<< "</allometry>";
//Auto-generate seed grid values
oOut << "<grid gridName=\"Dispersed Seeds\">"
<< "<ma_floatCodes>"
<< "<ma_floatCode label=\"seeds_0\">0</ma_floatCode>"
<< "<ma_floatCode label=\"seeds_1\">1</ma_floatCode>"
<< "<ma_floatCode label=\"seeds_2\">2</ma_floatCode>"
<< "</ma_floatCodes>"
<< "<ma_intCodes>"
<< "<ma_intCode label=\"count\">4</ma_intCode>"
<< "</ma_intCodes>"
<< "<ma_boolCodes>"
<< "<ma_boolCode label=\"Is Gap\">0</ma_boolCode>"
<< "</ma_boolCodes>"
<< "<ma_lengthXCells>5</ma_lengthXCells>"
<< "<ma_lengthYCells>5</ma_lengthYCells>";
for (iX = 0; iX < iNumX; iX++) {
for (iY = 0; iY < iNumY; iY++) {
oOut << "<ma_v x=\"" << iX << "\" y=\"" << iY << "\">"
<< "<fl c=\"0\">" << (iX + iY) << "</fl>"
<< "<fl c=\"1\">" << 2 * (iX + iY) << "</fl>"
<< "<fl c=\"2\">" << 3 * (iX + iY) << "</fl>"
<< "</ma_v>";
}
}
oOut << "</grid>"
<< "<behaviorList>"
<< "<behavior>"
<< "<behaviorName>NonSpatialDisperse</behaviorName>"
<< "<listPosition>1</listPosition>"
<< "<version>1</version>"
<< "<applyTo species=\"Species_1\" type=\"Adult\"/>"
<< "<applyTo species=\"Species_2\" type=\"Adult\"/>"
<< "<applyTo species=\"Species_3\" type=\"Adult\"/>"
<< "</behavior>"
<< "<behavior>"
<< "<behaviorName>Germination</behaviorName>"
<< "<version>1</version>"
<< "<listPosition>2</listPosition>"
<< "<applyTo species=\"Species_1\" type=\"Seed\"/>"
<< "<applyTo species=\"Species_2\" type=\"Seed\"/>"
<< "</behavior>"
<< "</behaviorList>"
<< "<NonSpatialDisperse1>"
<< "<di_minDbhForReproduction>"
<< "<di_mdfrVal species=\"Species_1\">15.0</di_mdfrVal>"
<< "<di_mdfrVal species=\"Species_2\">15.0</di_mdfrVal>"
<< "<di_mdfrVal species=\"Species_3\">15.0</di_mdfrVal>"
<< "</di_minDbhForReproduction>"
<< "<di_nonSpatialSlopeOfLambda>"
<< "<di_nssolVal species=\"Species_1\">1</di_nssolVal>"
<< "<di_nssolVal species=\"Species_2\">1</di_nssolVal>"
<< "<di_nssolVal species=\"Species_3\">1</di_nssolVal>"
<< "</di_nonSpatialSlopeOfLambda>"
<< "<di_nonSpatialInterceptOfLambda>"
<< "<di_nsiolVal species=\"Species_1\">1</di_nsiolVal>"
<< "<di_nsiolVal species=\"Species_2\">1</di_nsiolVal>"
<< "<di_nsiolVal species=\"Species_3\">1</di_nsiolVal>"
<< "</di_nonSpatialInterceptOfLambda>"
<< "</NonSpatialDisperse1>"
<< "<GeneralDisperse>"
<< "<di_seedDistributionMethod>0</di_seedDistributionMethod>"
<< "</GeneralDisperse>"
<< "<Germination2>"
<< "<ge_proportionGerminating>"
<< "<ge_pgVal species=\"Species_1\">-3</ge_pgVal>"
<< "<ge_pgVal species=\"Species_2\">0.7</ge_pgVal>"
<< "</ge_proportionGerminating>"
<< "</Germination2>"
<< "</paramFile>";
oOut.close();
return cFileString;
}
/////////////////////////////////////////////////////////////////////////////
// WriteGerminationXMLErrorFile2()
/////////////////////////////////////////////////////////////////////////////
const char* WriteGerminationXMLErrorFile2() {
using namespace std;
const char *cFileString = "TestFile1.xml";
int iX, iY, iNumX = 20, iNumY = 20;
//Open file to write to
fstream oOut;
oOut.open(cFileString, ios::out | ios::trunc);
oOut << "<?xml version=\"1.0\" encoding=\"UTF-8\" standalone=\"no\" ?>"
<< "<paramFile fileCode=\"06010101\">"
<< "<plot>"
<< "<timesteps>1</timesteps>"
<< "<yearsPerTimestep>5</yearsPerTimestep>"
<< "<randomSeed>1</randomSeed>"
<< "<plot_lenX>100.0</plot_lenX>"
<< "<plot_lenY>100.0</plot_lenY>"
<< "<plot_latitude>55.37</plot_latitude>"
<< "<plot_precip_mm_yr>1150.645781</plot_precip_mm_yr>"
<< "<plot_temp_C>12.88171785</plot_temp_C>"
<< "</plot>"
<< "<trees>"
<< "<tr_speciesList>"
<< "<tr_species speciesName=\"Species_1\"/>"
<< "<tr_species speciesName=\"Species_2\"/>"
<< "<tr_species speciesName=\"Species_3\"/>"
<< "</tr_speciesList>"
<< "<tr_seedDiam10Cm>0.1</tr_seedDiam10Cm>"
<< "<tr_minAdultDBH>"
<< "<tr_madVal species=\"Species_1\">10.0</tr_madVal>"
<< "<tr_madVal species=\"Species_2\">10.0</tr_madVal>"
<< "<tr_madVal species=\"Species_3\">10.0</tr_madVal>"
<< "</tr_minAdultDBH>"
<< "<tr_maxSeedlingHeight>"
<< "<tr_mshVal species=\"Species_1\">1.35</tr_mshVal>"
<< "<tr_mshVal species=\"Species_2\">1.35</tr_mshVal>"
<< "<tr_mshVal species=\"Species_3\">1.35</tr_mshVal>"
<< "</tr_maxSeedlingHeight>"
<< "</trees>"
<< "<allometry>"
<< "<tr_canopyHeight>"
<< "<tr_chVal species=\"Species_1\">39.48</tr_chVal>"
<< "<tr_chVal species=\"Species_2\">39.54</tr_chVal>"
<< "<tr_chVal species=\"Species_3\">40.0</tr_chVal>"
<< "</tr_canopyHeight>"
<< "<tr_stdAsympCrownRad>"
<< "<tr_sacrVal species=\"Species_1\">0.0549</tr_sacrVal>"
<< "<tr_sacrVal species=\"Species_2\">0.0614</tr_sacrVal>"
<< "<tr_sacrVal species=\"Species_3\">0.0242</tr_sacrVal>"
<< "</tr_stdAsympCrownRad>"
<< "<tr_stdCrownRadExp>"
<< "<tr_screVal species=\"Species_1\">1.0</tr_screVal>"
<< "<tr_screVal species=\"Species_2\">1.0</tr_screVal>"
<< "<tr_screVal species=\"Species_3\">1.0</tr_screVal>"
<< "</tr_stdCrownRadExp>"
<< "<tr_stdMaxCrownRad>"
<< "<tr_smcrVal species=\"Species_1\">10</tr_smcrVal>"
<< "<tr_smcrVal species=\"Species_2\">10</tr_smcrVal>"
<< "<tr_smcrVal species=\"Species_3\">10</tr_smcrVal>"
<< "</tr_stdMaxCrownRad>"
<< "<tr_conversionDiam10ToDBH>"
<< "<tr_cdtdVal species=\"Species_1\">0.8008</tr_cdtdVal>"
<< "<tr_cdtdVal species=\"Species_2\">0.5944</tr_cdtdVal>"
<< "<tr_cdtdVal species=\"Species_3\">0.7059</tr_cdtdVal>"
<< "</tr_conversionDiam10ToDBH>"
<< "<tr_interceptDiam10ToDBH>"
<< "<tr_idtdVal species=\"Species_1\">0</tr_idtdVal>"
<< "<tr_idtdVal species=\"Species_2\">0</tr_idtdVal>"
<< "<tr_idtdVal species=\"Species_3\">0</tr_idtdVal>"
<< "</tr_interceptDiam10ToDBH>"
<< "<tr_stdAsympCrownHt>"
<< "<tr_sachVal species=\"Species_1\">0.389</tr_sachVal>"
<< "<tr_sachVal species=\"Species_2\">0.368</tr_sachVal>"
<< "<tr_sachVal species=\"Species_3\">0.464</tr_sachVal>"
<< "</tr_stdAsympCrownHt>"
<< "<tr_stdCrownHtExp>"
<< "<tr_scheVal species=\"Species_1\">1.0</tr_scheVal>"
<< "<tr_scheVal species=\"Species_2\">1.0</tr_scheVal>"
<< "<tr_scheVal species=\"Species_3\">1.0</tr_scheVal>"
<< "</tr_stdCrownHtExp>"
<< "<tr_slopeOfHeight-Diam10>"
<< "<tr_sohdVal species=\"Species_1\">0.03418</tr_sohdVal>"
<< "<tr_sohdVal species=\"Species_2\">0.0269</tr_sohdVal>"
<< "<tr_sohdVal species=\"Species_3\">0.02871</tr_sohdVal>"
<< "</tr_slopeOfHeight-Diam10>"
<< "<tr_slopeOfAsymHeight>"
<< "<tr_soahVal species=\"Species_1\">0.0299</tr_soahVal>"
<< "<tr_soahVal species=\"Species_2\">0.0241</tr_soahVal>"
<< "<tr_soahVal species=\"Species_3\">0.0263</tr_soahVal>"
<< "</tr_slopeOfAsymHeight>"
<< "<tr_whatSeedlingHeightDiam>"
<< "<tr_wsehdVal species=\"Species_1\">0</tr_wsehdVal>"
<< "<tr_wsehdVal species=\"Species_2\">0</tr_wsehdVal>"
<< "<tr_wsehdVal species=\"Species_3\">0</tr_wsehdVal>"
<< "</tr_whatSeedlingHeightDiam>"
<< "<tr_whatSaplingHeightDiam>"
<< "<tr_wsahdVal species=\"Species_1\">0</tr_wsahdVal>"
<< "<tr_wsahdVal species=\"Species_2\">0</tr_wsahdVal>"
<< "<tr_wsahdVal species=\"Species_3\">0</tr_wsahdVal>"
<< "</tr_whatSaplingHeightDiam>"
<< "<tr_whatAdultHeightDiam>"
<< "<tr_wahdVal species=\"Species_1\">0</tr_wahdVal>"
<< "<tr_wahdVal species=\"Species_2\">0</tr_wahdVal>"
<< "<tr_wahdVal species=\"Species_3\">0</tr_wahdVal>"
<< "</tr_whatAdultHeightDiam>"
<< "<tr_whatAdultCrownRadDiam>"
<< "<tr_wacrdVal species=\"Species_1\">0</tr_wacrdVal>"
<< "<tr_wacrdVal species=\"Species_2\">0</tr_wacrdVal>"
<< "<tr_wacrdVal species=\"Species_3\">0</tr_wacrdVal>"
<< "</tr_whatAdultCrownRadDiam>"
<< "<tr_whatAdultCrownHeightHeight>"
<< "<tr_wachhVal species=\"Species_1\">0</tr_wachhVal>"
<< "<tr_wachhVal species=\"Species_2\">0</tr_wachhVal>"
<< "<tr_wachhVal species=\"Species_3\">0</tr_wachhVal>"
<< "</tr_whatAdultCrownHeightHeight>"
<< "<tr_whatSaplingCrownRadDiam>"
<< "<tr_wscrdVal species=\"Species_1\">0</tr_wscrdVal>"
<< "<tr_wscrdVal species=\"Species_2\">0</tr_wscrdVal>"
<< "<tr_wscrdVal species=\"Species_3\">0</tr_wscrdVal>"
<< "</tr_whatSaplingCrownRadDiam>"
<< "<tr_whatSaplingCrownHeightHeight>"
<< "<tr_wschhVal species=\"Species_1\">0</tr_wschhVal>"
<< "<tr_wschhVal species=\"Species_2\">0</tr_wschhVal>"
<< "<tr_wschhVal species=\"Species_3\">0</tr_wschhVal>"
<< "</tr_whatSaplingCrownHeightHeight>"
<< "</allometry>";
//Auto-generate seed grid values
oOut << "<grid gridName=\"Dispersed Seeds\">" << "<ma_floatCodes>"
<< "<ma_floatCode label=\"seeds_0\">0</ma_floatCode>"
<< "<ma_floatCode label=\"seeds_1\">1</ma_floatCode>"
<< "<ma_floatCode label=\"seeds_2\">2</ma_floatCode>"
<< "</ma_floatCodes>"
<< "<ma_intCodes>"
<< "<ma_intCode label=\"count\">4</ma_intCode>" << "</ma_intCodes>" << "<ma_boolCodes>"
<< "<ma_boolCode label=\"Is Gap\">0</ma_boolCode>" << "</ma_boolCodes>" << "<ma_lengthXCells>5</ma_lengthXCells>"
<< "<ma_lengthYCells>5</ma_lengthYCells>";
for (iX = 0; iX < iNumX; iX++) {
for (iY = 0; iY < iNumY; iY++) {
oOut << "<ma_v x=\"" << iX << "\" y=\"" << iY << "\">"
<< "<fl c=\"0\">" << (iX + iY) << "</fl>"
<< "<fl c=\"1\">" << 2 * (iX + iY) << "</fl>"
<< "<fl c=\"2\">" << 3 * (iX + iY) << "</fl>"
<< "</ma_v>";
}
}
oOut << "</grid>"
<< "<behaviorList>"
<< "<behavior>"
<< "<behaviorName>NonSpatialDisperse</behaviorName>"
<< "<version>1</version>"
<< "<listPosition>1</listPosition>"
<< "<applyTo species=\"Species_1\" type=\"Adult\"/>"
<< "<applyTo species=\"Species_2\" type=\"Adult\"/>"
<< "<applyTo species=\"Species_3\" type=\"Adult\"/>"
<< "</behavior>"
<< "<behavior>"
<< "<behaviorName>Germination</behaviorName>"
<< "<version>1</version>"
<< "<listPosition>2</listPosition>"
<< "<applyTo species=\"Species_1\" type=\"Seed\"/>"
<< "<applyTo species=\"Species_2\" type=\"Seed\"/>"
<< "</behavior>"
<< "</behaviorList>"
<< "<NonSpatialDisperse1>"
<< "<di_minDbhForReproduction>"
<< "<di_mdfrVal species=\"Species_1\">15.0</di_mdfrVal>"
<< "<di_mdfrVal species=\"Species_2\">15.0</di_mdfrVal>"
<< "<di_mdfrVal species=\"Species_3\">15.0</di_mdfrVal>"
<< "</di_minDbhForReproduction>"
<< "<di_nonSpatialSlopeOfLambda>"
<< "<di_nssolVal species=\"Species_1\">1</di_nssolVal>"
<< "<di_nssolVal species=\"Species_2\">1</di_nssolVal>"
<< "<di_nssolVal species=\"Species_3\">1</di_nssolVal>"
<< "</di_nonSpatialSlopeOfLambda>"
<< "<di_nonSpatialInterceptOfLambda>"
<< "<di_nsiolVal species=\"Species_1\">1</di_nsiolVal>"
<< "<di_nsiolVal species=\"Species_2\">1</di_nsiolVal>"
<< "<di_nsiolVal species=\"Species_3\">1</di_nsiolVal>"
<< "</di_nonSpatialInterceptOfLambda>"
<< "</NonSpatialDisperse1>"
<< "<GeneralDisperse>"
<< "<di_seedDistributionMethod>0</di_seedDistributionMethod>"
<< "</GeneralDisperse>"
<< "<Germination2>"
<< "<ge_proportionGerminating>"
<< "<ge_pgVal species=\"Species_1\">0.3</ge_pgVal>"
<< "<ge_pgVal species=\"Species_2\">1.45</ge_pgVal>"
<< "</ge_proportionGerminating>"
<< "</Germination2>"
<< "</paramFile>";
oOut.close();
return cFileString;
}