From 50a19aa7d58e8fba76f6cda541353a808f689e73 Mon Sep 17 00:00:00 2001
From: Arthur Loureiro <arthur.loureiro@fysik.su.se>
Date: Tue, 2 Jul 2024 16:54:34 +0200
Subject: [PATCH] fixed inconsistency in the readme

---
 README.md       | 20 ++++++++++++--------
 environment.yml |  2 +-
 2 files changed, 13 insertions(+), 9 deletions(-)

diff --git a/README.md b/README.md
index a387b8b..f9d7cac 100644
--- a/README.md
+++ b/README.md
@@ -25,6 +25,8 @@ First clone and enter the `augur` repository:
 ```bash
 git clone git@github.com:LSSTDESC/augur.git
 cd augur
+# set the variable AUGUR_DIR to the current directory
+AUGUR_DIR=${PWD}
 ```
 
 ### Create a new conda environment
@@ -43,6 +45,16 @@ conda env update --name my_env --file=environment.yml --prune
 ```
 and activate your environment with `conda activate [my_env/forecasting]`.
 
+### Cosmosis setup
+Now we need to build the cosmosis standard library:
+```bash
+source ${CONDA_PREFIX}/bin/cosmosis-configure
+cd ${CONDA_PREFIX}
+cosmosis-build-standard-library
+# go back to the augur directory
+cd ${AUGUR_DIR}
+```
+
 ### Configure paths necessary for Augur
 We need to let augur know about the location of Firecrown, to do that, run the following command:
 ```bash
@@ -58,14 +70,6 @@ conda deactivate
 conda activate forecasting
 ```
 
-### Cosmosis setup
-Now we need to build the cosmosis standard library:
-```bash
-source ${CONDA_PREFIX}/bin/cosmosis-configure
-cd ${CONDA_PREFIX}
-cosmosis-build-standard-library
-```
-
 ### Finally install augur
 ```bash
 cd ${AUGUR_DIR}
diff --git a/environment.yml b/environment.yml
index 440609d..d5702c8 100644
--- a/environment.yml
+++ b/environment.yml
@@ -10,4 +10,4 @@ dependencies:
   - numdifftools
   - numpydoc
   - qp-prob
-  - tjpcov
+  - tjpcov
\ No newline at end of file