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LianeHughes committed Oct 13, 2023
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# Refer to entries of the "main_tool_and_resource_table" if institutions, organizations and projects from the country contribute to the development of international tools and resources.

national_resources:
- name: COVID-19 & Pandemic Preparedness Data Portal Sweden
description: The Swedish COVID-19 & Pandemic Preparedness Data Portal is a hub for data, tools, services, and other resources centred around COVID-19 and pandemic preparedness in Sweden.
- name: Swedish Pathogens Portal
description: The Swedish Pathogens Portal is a hub for data, tools, services, and other resources centred around pathogens, such as SARS-CoV-2, and pandemic preparedness in Sweden.
how_to_access:
instance_of:
related_pages:
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Wastewater surveillance has proven to be an effective means of predicting outbreaks, with peaks in viral genome content shown to precede increases in cases and hospitalisations. This is also true of Swedish wastewater surveillance efforts, with e.g. [Wang _et al._ (2022)](https://pubmed.ncbi.nlm.nih.gov/36035197/) showing that peaks in viral genome content preceded increases in cases by two weeks.

Multiple research groups across Sweden have monitored viral genome content in wastewater, including groups at the [University of Gothenburg (GU)](https://www.gu.se/en), [KTH Royal Institute of Technology (KTH)](https://www.kth.se/en), and [Swedish University of Agricultural Sciences (SLU)](https://www.slu.se/en/). More information on the work by these groups, including the data collected, is on the [Swedish Pathogens Portal](https://www.pathogens.se/dashboards/wastewater/). Throughout the COVID-19 pandemic, each of these groups quantified the levels of SARS-CoV-2 in wastewater (see SARS-CoV-2 data from [GU](https://www.pathogens.se/dashboards/wastewater/covid_quantification/covid_quant_gu/), [KTH](https://www.pathogens.se/dashboards/wastewater/covid_quantification/covid_quant_kth/), and [SLU](https://www.pathogens.se/dashboards/wastewater/covid_quantification/covid_quant_slu/)). The groups also monitor other pathogens in wastewater, and share this data on the Swedish Pathogens Portal. For example, see the dashboards related to [monitoring enteric viruses by GU](https://www.pathogens.se/dashboards/wastewater/enteric_quantification/), or [monitoring influenza by SLU](https://www.pathogens.se/dashboards/wastewater/influenza_quantification/).
Multiple research groups across Sweden have monitored viral genome content in wastewater, including groups at the [University of Gothenburg (GU)](https://www.gu.se/en), [KTH Royal Institute of Technology (KTH)](https://www.kth.se/en), and [Swedish University of Agricultural Sciences (SLU)](https://www.slu.se/en/). More information on the work by these groups, including the data collected, is on the [Swedish Pathogens Portal](https://www.pathogens.se/dashboards/wastewater/). Throughout the COVID-19 pandemic, each of these groups quantified the levels of SARS-CoV-2 in wastewater (see SARS-CoV-2 data from [GU](https://www.pathogens.se/dashboards/wastewater/covid_quantification/covid_quant_gu/), [KTH](https://www.pathogens.se/dashboards/wastewater/covid_quantification/covid_quant_kth/), and [SLU](https://www.pathogens.se/dashboards/wastewater/covid_quantification/covid_quant_slu/)). The groups also monitor other pathogens in wastewater, and share this data on the Swedish Pathogens Portal. For example, see the dashboards related to [monitoring enteric viruses by GU](https://www.pathogens.se/dashboards/wastewater/enteric_quantification/) and [monitoring influenza by SLU](https://www.pathogens.se/dashboards/wastewater/influenza_quantification/).

### Sentinel monitoring in healthcare

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- [SARS-CoV-2 antibody tests conducted by the SciLifeLab Autoimmunity and Serology profiling facility](https://www.pathogens.se/dashboards/serology-statistics/): shows the total number of tests conducted, as well as the number of positive and negative tests over time.
- [Wastewater monitoring by research groups in Sweden](https://www.pathogens.se/dashboards/wastewater/): shows data about the levels of viral genomes (e.g. SARS-CoV-2, influenza, enteric viruses) in wastewater in multiple Swedish cities over time.
- [Administration of COVID-19 vaccinations in Sweden](https://www.pathogens.se/dashboards/vaccines/): shows vaccine coverage in terms of different doses, different regions, and different age groups.
- [Register-based large-scale national population study to monitor COVID-19 vaccination effectiveness and safety](https://www.pathogens.se/dashboards/recovac/): uses registry based data to examine how the number of vaccine doses differs across age ranges and how this relates to ICU admissions for the general population. The resource also examines dose level among people in specific risk categories, both in general and when infected with COVID-19.
- [Post COVID-19 condition/long COVID in Sweden](https://www.pathogens.se/dashboards/post_covid/): shows the distribution of patients diagnosed with post COVID-19 condition in Sweden, in terms of age, sex, geography, as well as contacts with healthcare and secondary diagnoses.
- [Swedish COVID-19 Publications](https://www.pathogens.se/dashboards/covid_publications/): shows information about publications related to COVID-19/SARS-CoV-2 that involve at least one person affiliated with a Swedish institution.
- [Administration of COVID-19 vaccinations in Sweden](https://www.pathogens.se/dashboards/vaccines/): shows vaccine coverage in terms of different doses, different regions, and different age groups (no longer updated as of April 2023).
- [CRUSH Covid project dashboard](https://www.pathogens.se/dashboards/crush_covid/): a compilation of resources related to the outcomes of the CRUSH Covid project, which mapped outbreaks of COVID-19 in Uppsala and issued reports targeted at minimising the impact on public health (no longer updated as of September 2022).
- [COVID symptom study Sweden](https://www.pathogens.se/dashboards/symptom_study_sweden/): a compilation of resources related to the COVID symptom study Sweden project, which monitored the occurrence of COVID-19 symptoms across different regions of Sweden to estimate the prevalence and distribution of symptomatic cases (no longer updated as of July 2022).
- [COVID-19 test statistics from the National Pandemic Centre](https://www.pathogens.se/dashboards/npc-statistics/): shows the number of tests conducted each week, and the relative proportions of positive, negative, and inconclusive results over time (no longer updated as of December 2020).
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